Wall clock time and date at job start Mon Mar 30 2020 06:28:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46501 * 109.46853 * 2 1 4 4 C 1.36938 * 120.00074 * 263.91835 * 3 2 1 5 5 H 1.08000 * 119.99409 * 188.16190 * 4 3 2 6 6 C 1.38811 * 119.99941 * 8.15643 * 4 3 2 7 7 N 1.31614 * 120.00025 * 24.94158 * 6 4 3 8 8 Si 1.86795 * 119.99789 * 204.93677 * 6 4 3 9 9 H 1.48510 * 109.47154 * 84.99268 * 8 6 4 10 10 H 1.48506 * 109.46923 * 204.98761 * 8 6 4 11 11 H 1.48490 * 109.47473 * 324.99041 * 8 6 4 12 12 C 1.46508 * 119.99921 * 83.92005 * 3 2 1 13 13 C 1.50697 * 109.46790 * 269.99884 * 12 3 2 14 14 C 1.32617 * 120.00221 * 125.00324 * 13 12 3 15 15 C 1.47732 * 120.00262 * 179.97438 * 14 13 12 16 16 C 1.39512 * 120.17162 * 0.02562 * 15 14 13 17 17 C 1.37944 * 119.91204 * 179.97438 * 16 15 14 18 18 C 1.38418 * 120.26274 * 0.02562 * 17 16 15 19 19 C 1.38205 * 120.34387 * 0.02562 * 18 17 16 20 20 C 1.38542 * 120.08338 * 359.97438 * 19 18 17 21 21 O 1.35828 * 120.13215 * 180.02562 * 20 19 18 22 22 C 1.42904 * 116.99814 * 359.97438 * 21 20 19 23 23 H 1.09000 * 109.46899 * 299.99750 * 1 2 3 24 24 H 1.09001 * 109.46983 * 60.00163 * 1 2 3 25 25 H 1.08999 * 109.46725 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47616 * 240.00061 * 2 1 3 27 27 H 1.09001 * 109.46983 * 119.99837 * 2 1 3 28 28 H 0.97002 * 120.00177 * 179.97438 * 7 6 4 29 29 H 1.08999 * 109.46872 * 150.00193 * 12 3 2 30 30 H 1.08995 * 109.46953 * 29.99550 * 12 3 2 31 31 H 1.08004 * 120.00403 * 304.99751 * 13 12 3 32 32 H 1.07994 * 119.99519 * 359.97438 * 14 13 12 33 33 H 1.08001 * 120.03949 * 359.95527 * 16 15 14 34 34 H 1.08001 * 119.87482 * 180.02562 * 17 16 15 35 35 H 1.08000 * 119.83292 * 180.27212 * 18 17 16 36 36 H 1.08004 * 119.95613 * 179.97438 * 19 18 17 37 37 H 1.09002 * 109.47122 * 180.02562 * 22 21 20 38 38 H 1.08999 * 109.46926 * 300.00139 * 22 21 20 39 39 H 1.08996 * 109.47238 * 59.99923 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3650 1.9849 -1.1792 5 1 2.8472 2.9513 -1.1697 6 6 2.0967 1.3548 -2.3866 7 7 1.1224 0.4736 -2.4669 8 14 3.1186 1.7575 -3.8975 9 1 4.3487 0.9254 -3.8994 10 1 2.3266 1.4728 -5.1210 11 1 3.4929 3.1943 -3.8734 12 6 2.1358 2.1167 1.2617 13 6 0.8440 2.8397 1.5437 14 6 0.2127 2.6454 2.6936 15 6 -1.0534 3.3546 2.9703 16 6 -1.5884 4.2292 2.0242 17 6 -2.7712 4.8882 2.2879 18 6 -3.4299 4.6858 3.4884 19 6 -2.9090 3.8226 4.4337 20 6 -1.7220 3.1533 4.1837 21 8 -1.2094 2.3043 5.1119 22 6 -1.9468 2.1485 6.3260 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8935 -0.5138 -0.8899 27 1 1.8934 -0.5138 0.8900 28 1 0.9347 0.0336 -3.3107 29 1 2.9479 2.8398 1.1864 30 1 2.3452 1.4178 2.0714 31 1 0.4323 3.5163 0.8093 32 1 0.6241 1.9686 3.4278 33 1 -1.0770 4.3903 1.0867 34 1 -3.1850 5.5649 1.5549 35 1 -4.3577 5.2020 3.6858 36 1 -3.4279 3.6696 5.3685 37 1 -1.4286 1.4454 6.9782 38 1 -2.0309 3.1133 6.8263 39 1 -2.9430 1.7685 6.0999 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000092398937.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:55 Heat of formation + Delta-G solvation = 31.938695 kcal Electronic energy + Delta-G solvation = -19292.030454 eV Core-core repulsion = 16394.479270 eV Total energy + Delta-G solvation = -2897.551184 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.99011 -37.36065 -36.30645 -33.87493 -31.35699 -30.00633 -29.96176 -28.72718 -27.21875 -25.34418 -23.38945 -22.28630 -21.62936 -20.21210 -18.72864 -17.97064 -16.61096 -16.16962 -15.68641 -15.53028 -14.89917 -14.31467 -13.96347 -13.67959 -13.60164 -13.00561 -12.78426 -12.72682 -12.03583 -11.92216 -11.77428 -11.46965 -11.38912 -11.08810 -10.87927 -10.80335 -10.64187 -10.46600 -10.25343 -10.04661 -9.80014 -9.51494 -9.30121 -8.40466 -8.30627 -7.38332 -6.86721 -5.73812 -3.03190 1.25681 1.58454 3.05267 3.34615 3.41877 3.49595 3.50031 4.14879 4.55078 4.85176 4.90398 5.06769 5.08320 5.21777 5.35523 5.38554 5.49026 5.55417 5.63947 5.79684 5.83988 6.14239 6.25876 6.36908 6.48398 6.61962 6.64870 6.68912 6.78123 6.91342 6.98562 7.14996 7.24133 7.35013 7.46342 7.54988 7.71643 7.84113 8.16045 8.40203 9.27251 9.90136 10.35512 11.29879 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.028054 B = 0.004624 C = 0.004330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 997.831306 B = 6054.484216 C = 6464.661979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.166 3.834 3 N -0.591 5.591 4 C -0.249 4.249 5 H 0.075 0.925 6 C -0.003 4.003 7 N -0.894 5.894 8 Si 0.897 3.103 9 H -0.289 1.289 10 H -0.294 1.294 11 H -0.282 1.282 12 C 0.169 3.831 13 C -0.113 4.113 14 C -0.161 4.161 15 C -0.053 4.053 16 C -0.087 4.087 17 C -0.151 4.151 18 C -0.100 4.100 19 C -0.208 4.208 20 C 0.120 3.880 21 O -0.311 6.311 22 C 0.028 3.972 23 H 0.016 0.984 24 H 0.086 0.914 25 H 0.016 0.984 26 H 0.089 0.911 27 H 0.002 0.998 28 H 0.252 0.748 29 H 0.057 0.943 30 H 0.047 0.953 31 H 0.105 0.895 32 H 0.113 0.887 33 H 0.133 0.867 34 H 0.121 0.879 35 H 0.118 0.882 36 H 0.123 0.877 37 H 0.097 0.903 38 H 0.051 0.949 39 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.158 5.208 14.165 16.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.041 3.959 3 N -0.311 5.311 4 C -0.378 4.378 5 H 0.093 0.907 6 C -0.201 4.201 7 N -0.540 5.540 8 Si 0.728 3.272 9 H -0.216 1.216 10 H -0.220 1.220 11 H -0.207 1.207 12 C 0.042 3.958 13 C -0.134 4.134 14 C -0.181 4.181 15 C -0.054 4.054 16 C -0.105 4.105 17 C -0.169 4.169 18 C -0.118 4.118 19 C -0.227 4.227 20 C 0.075 3.925 21 O -0.224 6.224 22 C -0.067 4.067 23 H 0.035 0.965 24 H 0.105 0.895 25 H 0.036 0.964 26 H 0.107 0.893 27 H 0.020 0.980 28 H 0.062 0.938 29 H 0.075 0.925 30 H 0.065 0.935 31 H 0.123 0.877 32 H 0.131 0.869 33 H 0.151 0.849 34 H 0.139 0.861 35 H 0.136 0.864 36 H 0.140 0.860 37 H 0.115 0.885 38 H 0.070 0.930 39 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -6.994 4.970 13.986 16.408 hybrid contribution -0.155 0.265 -0.658 0.726 sum -7.148 5.235 13.328 16.005 Atomic orbital electron populations 1.22315 0.99222 0.98048 1.01249 1.20854 0.92561 0.84288 0.98181 1.44391 1.75203 1.09985 1.01565 1.19336 1.31257 1.03531 0.83656 0.90736 1.24733 0.97994 1.00040 0.97295 1.70178 1.27470 1.31493 1.24855 0.86363 0.80436 0.77836 0.82610 1.21609 1.22010 1.20749 1.20011 0.92634 0.93900 0.89206 1.24630 0.99200 0.95379 0.94183 1.21243 0.94673 1.03217 0.98954 1.18584 0.96367 0.98968 0.91500 1.21263 0.95523 0.95035 0.98675 1.20963 0.96428 1.01915 0.97580 1.20847 0.99389 0.97880 0.93677 1.21076 0.97488 1.02611 1.01537 1.19065 0.92696 0.91266 0.89473 1.86079 1.49370 1.60568 1.26357 1.23008 0.97001 1.01665 0.85021 0.96454 0.89509 0.96447 0.89330 0.97976 0.93804 0.92539 0.93508 0.87667 0.86873 0.84910 0.86139 0.86353 0.85954 0.88459 0.92995 0.92929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.60 9.58 37.16 0.36 -3.25 16 2 C 0.17 4.12 5.64 -4.04 -0.02 4.09 16 3 N -0.59 -14.72 2.52 -174.60 -0.44 -15.16 16 4 C -0.25 -6.69 9.70 -15.06 -0.15 -6.84 16 5 H 0.07 1.96 7.93 -52.49 -0.42 1.54 16 6 C 0.00 -0.09 4.91 -17.43 -0.09 -0.18 16 7 N -0.89 -25.12 8.60 55.49 0.48 -24.65 16 8 Si 0.90 21.52 29.62 -169.99 -5.04 16.49 16 9 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 10 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 11 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 12 C 0.17 3.53 6.15 -5.19 -0.03 3.50 16 13 C -0.11 -2.20 8.29 -36.21 -0.30 -2.50 16 14 C -0.16 -2.94 9.11 -37.60 -0.34 -3.28 16 15 C -0.05 -0.91 5.88 -104.88 -0.62 -1.53 16 16 C -0.09 -1.39 9.40 -39.21 -0.37 -1.76 16 17 C -0.15 -2.05 10.03 -39.62 -0.40 -2.45 16 18 C -0.10 -1.24 10.03 -39.53 -0.40 -1.64 16 19 C -0.21 -2.71 9.03 -39.48 -0.36 -3.06 16 20 C 0.12 1.85 6.69 -38.81 -0.26 1.59 16 21 O -0.31 -4.51 9.68 -19.20 -0.19 -4.69 16 22 C 0.03 0.27 9.81 101.05 0.99 1.26 16 23 H 0.02 0.39 7.15 -51.93 -0.37 0.02 16 24 H 0.09 2.36 6.36 -51.93 -0.33 2.03 16 25 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 26 H 0.09 2.42 5.82 -51.93 -0.30 2.11 16 27 H 0.00 0.05 7.98 -51.93 -0.41 -0.37 16 28 H 0.25 6.92 8.31 -40.82 -0.34 6.58 16 29 H 0.06 1.13 8.03 -51.93 -0.42 0.71 16 30 H 0.05 0.91 7.62 -51.93 -0.40 0.52 16 31 H 0.11 2.14 6.04 -52.48 -0.32 1.82 16 32 H 0.11 2.04 7.45 -52.49 -0.39 1.65 16 33 H 0.13 2.13 6.17 -52.49 -0.32 1.80 16 34 H 0.12 1.37 8.06 -52.49 -0.42 0.95 16 35 H 0.12 1.14 8.06 -52.49 -0.42 0.71 16 36 H 0.12 1.25 6.30 -52.48 -0.33 0.92 16 37 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.05 0.42 7.66 -51.93 -0.40 0.02 16 39 H 0.05 0.45 7.66 -51.93 -0.40 0.05 16 LS Contribution 318.87 15.07 4.81 4.81 Total: -1.00 -29.51 318.87 -7.99 -37.50 By element: Atomic # 1 Polarization: 7.39 SS G_CDS: -5.63 Total: 1.76 kcal Atomic # 6 Polarization: -14.07 SS G_CDS: -1.98 Total: -16.04 kcal Atomic # 7 Polarization: -39.84 SS G_CDS: 0.04 Total: -39.81 kcal Atomic # 8 Polarization: -4.51 SS G_CDS: -0.19 Total: -4.69 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.04 Total: 16.49 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -29.51 -7.99 -37.50 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092398937.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.435 kcal (2) G-P(sol) polarization free energy of solvation -29.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.496 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds