Wall clock time and date at job start Mon Mar 30 2020 06:28:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46501 * 109.46853 * 2 1 4 4 C 1.36938 * 120.00074 * 263.91835 * 3 2 1 5 5 H 1.08000 * 119.99409 * 188.16190 * 4 3 2 6 6 C 1.38811 * 119.99941 * 8.15643 * 4 3 2 7 7 N 1.31614 * 120.00025 * 24.94158 * 6 4 3 8 8 Si 1.86795 * 119.99789 * 204.93677 * 6 4 3 9 9 H 1.48510 * 109.47154 * 84.99268 * 8 6 4 10 10 H 1.48506 * 109.46923 * 204.98761 * 8 6 4 11 11 H 1.48490 * 109.47473 * 324.99041 * 8 6 4 12 12 C 1.46508 * 119.99921 * 83.92005 * 3 2 1 13 13 C 1.50697 * 109.46790 * 269.99884 * 12 3 2 14 14 C 1.32617 * 120.00221 * 125.00324 * 13 12 3 15 15 C 1.47732 * 120.00262 * 179.97438 * 14 13 12 16 16 C 1.39512 * 120.17162 * 0.02562 * 15 14 13 17 17 C 1.37944 * 119.91204 * 179.97438 * 16 15 14 18 18 C 1.38418 * 120.26274 * 0.02562 * 17 16 15 19 19 C 1.38205 * 120.34387 * 0.02562 * 18 17 16 20 20 C 1.38542 * 120.08338 * 359.97438 * 19 18 17 21 21 O 1.35828 * 120.13215 * 180.02562 * 20 19 18 22 22 C 1.42904 * 116.99814 * 359.97438 * 21 20 19 23 23 H 1.09000 * 109.46899 * 299.99750 * 1 2 3 24 24 H 1.09001 * 109.46983 * 60.00163 * 1 2 3 25 25 H 1.08999 * 109.46725 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47616 * 240.00061 * 2 1 3 27 27 H 1.09001 * 109.46983 * 119.99837 * 2 1 3 28 28 H 0.97002 * 120.00177 * 179.97438 * 7 6 4 29 29 H 1.08999 * 109.46872 * 150.00193 * 12 3 2 30 30 H 1.08995 * 109.46953 * 29.99550 * 12 3 2 31 31 H 1.08004 * 120.00403 * 304.99751 * 13 12 3 32 32 H 1.07994 * 119.99519 * 359.97438 * 14 13 12 33 33 H 1.08001 * 120.03949 * 359.95527 * 16 15 14 34 34 H 1.08001 * 119.87482 * 180.02562 * 17 16 15 35 35 H 1.08000 * 119.83292 * 180.27212 * 18 17 16 36 36 H 1.08004 * 119.95613 * 179.97438 * 19 18 17 37 37 H 1.09002 * 109.47122 * 180.02562 * 22 21 20 38 38 H 1.08999 * 109.46926 * 300.00139 * 22 21 20 39 39 H 1.08996 * 109.47238 * 59.99923 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3650 1.9849 -1.1792 5 1 2.8472 2.9513 -1.1697 6 6 2.0967 1.3548 -2.3866 7 7 1.1224 0.4736 -2.4669 8 14 3.1186 1.7575 -3.8975 9 1 4.3487 0.9254 -3.8994 10 1 2.3266 1.4728 -5.1210 11 1 3.4929 3.1943 -3.8734 12 6 2.1358 2.1167 1.2617 13 6 0.8440 2.8397 1.5437 14 6 0.2127 2.6454 2.6936 15 6 -1.0534 3.3546 2.9703 16 6 -1.5884 4.2292 2.0242 17 6 -2.7712 4.8882 2.2879 18 6 -3.4299 4.6858 3.4884 19 6 -2.9090 3.8226 4.4337 20 6 -1.7220 3.1533 4.1837 21 8 -1.2094 2.3043 5.1119 22 6 -1.9468 2.1485 6.3260 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8935 -0.5138 -0.8899 27 1 1.8934 -0.5138 0.8900 28 1 0.9347 0.0336 -3.3107 29 1 2.9479 2.8398 1.1864 30 1 2.3452 1.4178 2.0714 31 1 0.4323 3.5163 0.8093 32 1 0.6241 1.9686 3.4278 33 1 -1.0770 4.3903 1.0867 34 1 -3.1850 5.5649 1.5549 35 1 -4.3577 5.2020 3.6858 36 1 -3.4279 3.6696 5.3685 37 1 -1.4286 1.4454 6.9782 38 1 -2.0309 3.1133 6.8263 39 1 -2.9430 1.7685 6.0999 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000092398937.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:54 Heat of formation + Delta-G solvation = 17.093532 kcal Electronic energy + Delta-G solvation = -19292.674189 eV Core-core repulsion = 16394.479270 eV Total energy + Delta-G solvation = -2898.194918 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.05382 -38.52956 -38.01714 -35.37952 -33.16693 -31.66869 -31.06138 -30.36084 -28.11984 -27.01161 -25.16074 -23.60160 -22.85728 -22.04711 -20.15024 -19.01608 -18.60271 -17.33376 -16.81811 -16.63138 -16.60149 -15.59755 -15.46958 -15.32270 -14.91595 -14.55956 -14.22935 -13.78592 -13.71331 -13.53935 -13.16547 -13.02853 -12.80364 -12.70733 -12.43019 -12.37226 -11.99807 -11.95610 -11.85041 -11.77007 -11.59911 -11.35315 -10.89623 -10.34266 -9.51221 -8.87011 -8.64405 -7.78657 -5.09804 0.06370 0.49277 1.49957 1.52880 1.59422 1.71645 2.41395 2.57604 2.97994 3.30340 3.71895 3.87259 3.90630 4.12316 4.27135 4.38245 4.41579 4.42230 4.49804 4.62295 4.71885 4.74807 4.80006 4.85884 5.00185 5.07328 5.13509 5.19513 5.27442 5.34857 5.41413 5.59337 5.61965 5.79953 5.83855 5.87775 6.04336 6.12975 6.38718 6.51692 7.23078 7.94107 8.35564 9.23746 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.028054 B = 0.004624 C = 0.004330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 997.831306 B = 6054.484216 C = 6464.661979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.169 3.831 3 N -0.606 5.606 4 C -0.258 4.258 5 H 0.074 0.926 6 C -0.051 4.051 7 N -0.918 5.918 8 Si 0.958 3.042 9 H -0.289 1.289 10 H -0.299 1.299 11 H -0.274 1.274 12 C 0.171 3.829 13 C -0.137 4.137 14 C -0.134 4.134 15 C -0.097 4.097 16 C -0.100 4.100 17 C -0.159 4.159 18 C -0.086 4.086 19 C -0.208 4.208 20 C 0.116 3.884 21 O -0.335 6.335 22 C 0.018 3.982 23 H 0.020 0.980 24 H 0.054 0.946 25 H 0.029 0.971 26 H 0.061 0.939 27 H 0.021 0.979 28 H 0.246 0.754 29 H 0.060 0.940 30 H 0.059 0.941 31 H 0.091 0.909 32 H 0.114 0.886 33 H 0.119 0.881 34 H 0.142 0.858 35 H 0.157 0.843 36 H 0.156 0.844 37 H 0.115 0.885 38 H 0.068 0.932 39 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.597 6.055 16.186 19.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.044 3.956 3 N -0.327 5.327 4 C -0.388 4.388 5 H 0.092 0.908 6 C -0.246 4.246 7 N -0.565 5.565 8 Si 0.787 3.213 9 H -0.217 1.217 10 H -0.226 1.226 11 H -0.199 1.199 12 C 0.045 3.955 13 C -0.158 4.158 14 C -0.153 4.153 15 C -0.098 4.098 16 C -0.118 4.118 17 C -0.177 4.177 18 C -0.104 4.104 19 C -0.226 4.226 20 C 0.070 3.930 21 O -0.248 6.248 22 C -0.076 4.076 23 H 0.039 0.961 24 H 0.073 0.927 25 H 0.048 0.952 26 H 0.080 0.920 27 H 0.039 0.961 28 H 0.055 0.945 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.109 0.891 32 H 0.132 0.868 33 H 0.137 0.863 34 H 0.160 0.840 35 H 0.174 0.826 36 H 0.173 0.827 37 H 0.134 0.866 38 H 0.087 0.913 39 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -8.429 5.840 16.047 19.044 hybrid contribution 0.163 0.063 -1.053 1.067 sum -8.266 5.903 14.994 18.111 Atomic orbital electron populations 1.22078 0.98919 0.98333 0.99693 1.20727 0.92748 0.84533 0.97629 1.44502 1.75606 1.10377 1.02261 1.19574 1.31005 1.03508 0.84677 0.90796 1.25379 0.98898 1.00656 0.99659 1.70335 1.28527 1.32711 1.24927 0.85413 0.78660 0.77816 0.79376 1.21658 1.22594 1.19946 1.20066 0.93415 0.94060 0.87916 1.24210 0.99152 0.97390 0.95080 1.21337 0.94628 1.01514 0.97857 1.18664 0.96882 1.00890 0.93388 1.21321 0.96646 0.95619 0.98187 1.21268 0.95618 1.01922 0.98895 1.21340 1.00000 0.96594 0.92437 1.21475 0.96535 1.01681 1.02927 1.19221 0.93250 0.91432 0.89062 1.86043 1.50772 1.60317 1.27706 1.23352 0.97525 1.03268 0.83468 0.96131 0.92671 0.95153 0.92042 0.96127 0.94476 0.92160 0.92247 0.89109 0.86760 0.86322 0.84009 0.82575 0.82698 0.86629 0.91313 0.91729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.41 9.58 71.98 0.69 -5.72 16 2 C 0.17 8.49 5.64 86.38 0.49 8.97 16 3 N -0.61 -30.73 2.52 -706.32 -1.78 -32.52 16 4 C -0.26 -14.15 9.70 84.03 0.82 -13.33 16 5 H 0.07 3.96 7.93 -2.91 -0.02 3.94 16 6 C -0.05 -2.83 4.91 84.86 0.42 -2.42 16 7 N -0.92 -53.00 8.60 21.65 0.19 -52.81 16 8 Si 0.96 45.13 29.62 68.60 2.03 47.16 16 9 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 10 H -0.30 -14.24 7.11 99.48 0.71 -13.53 16 11 H -0.27 -12.44 7.11 99.48 0.71 -11.74 16 12 C 0.17 7.22 6.15 85.63 0.53 7.75 16 13 C -0.14 -5.53 8.29 24.52 0.20 -5.33 16 14 C -0.13 -4.93 9.11 23.62 0.22 -4.71 16 15 C -0.10 -3.31 5.88 -20.03 -0.12 -3.43 16 16 C -0.10 -3.18 9.40 22.51 0.21 -2.97 16 17 C -0.16 -4.01 10.03 22.24 0.22 -3.79 16 18 C -0.09 -1.82 10.03 22.30 0.22 -1.59 16 19 C -0.21 -4.66 9.03 22.33 0.20 -4.46 16 20 C 0.12 3.37 6.69 22.77 0.15 3.52 16 21 O -0.33 -9.07 9.68 -91.62 -0.89 -9.96 16 22 C 0.02 0.28 9.81 113.37 1.11 1.40 16 23 H 0.02 0.94 7.15 -2.39 -0.02 0.93 16 24 H 0.05 3.07 6.36 -2.39 -0.02 3.05 16 25 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 26 H 0.06 3.43 5.82 -2.39 -0.01 3.42 16 27 H 0.02 0.94 7.98 -2.39 -0.02 0.92 16 28 H 0.25 13.90 8.31 -92.71 -0.77 13.13 16 29 H 0.06 2.45 8.03 -2.39 -0.02 2.43 16 30 H 0.06 2.31 7.62 -2.39 -0.02 2.29 16 31 H 0.09 3.90 6.04 -2.91 -0.02 3.88 16 32 H 0.11 4.10 7.45 -2.91 -0.02 4.08 16 33 H 0.12 4.00 6.17 -2.91 -0.02 3.99 16 34 H 0.14 2.88 8.06 -2.91 -0.02 2.86 16 35 H 0.16 2.14 8.06 -2.91 -0.02 2.11 16 36 H 0.16 2.40 6.30 -2.91 -0.02 2.38 16 37 H 0.12 1.37 8.14 -2.39 -0.02 1.35 16 38 H 0.07 0.85 7.66 -2.39 -0.02 0.83 16 39 H 0.06 0.86 7.66 -2.39 -0.02 0.85 16 Total: -1.00 -64.51 318.87 5.93 -58.58 By element: Atomic # 1 Polarization: 14.64 SS G_CDS: 1.03 Total: 15.67 kcal Atomic # 6 Polarization: -31.48 SS G_CDS: 5.36 Total: -26.12 kcal Atomic # 7 Polarization: -83.73 SS G_CDS: -1.60 Total: -85.32 kcal Atomic # 8 Polarization: -9.07 SS G_CDS: -0.89 Total: -9.96 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 2.03 Total: 47.16 kcal Total: -64.51 5.93 -58.58 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092398937.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.672 kcal (2) G-P(sol) polarization free energy of solvation -64.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.578 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds