Wall clock time and date at job start Mon Mar 30 2020 06:29:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46902 * 109.46964 * 2 1 4 4 C 1.46906 * 111.00046 * 179.97438 * 3 2 1 5 5 C 1.50704 * 109.46834 * 179.97438 * 4 3 2 6 6 C 1.50697 * 119.99914 * 274.99840 * 5 4 3 7 7 C 1.32645 * 120.00107 * 95.00236 * 5 4 3 8 8 C 1.47722 * 120.00334 * 172.30372 * 7 5 4 9 9 C 1.39641 * 120.07077 * 322.20788 * 8 7 5 10 10 C 1.37782 * 119.92713 * 179.73992 * 9 8 7 11 11 C 1.39034 * 120.06858 * 0.56026 * 10 9 8 12 12 O 1.35684 * 119.92744 * 179.71923 * 11 10 9 13 13 C 1.34810 * 117.00159 * 185.93629 * 12 11 10 14 14 H 1.08000 * 119.99846 * 354.89513 * 13 12 11 15 15 C 1.38648 * 119.99870 * 174.89444 * 13 12 11 16 16 N 1.31563 * 119.99692 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 119.99926 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.46927 * 90.00161 * 17 15 13 19 19 H 1.48492 * 109.47054 * 209.99923 * 17 15 13 20 20 H 1.48496 * 109.47027 * 330.00358 * 17 15 13 21 21 C 1.39034 * 120.14884 * 359.69372 * 11 10 9 22 22 C 1.37786 * 120.07114 * 0.02562 * 21 11 10 23 23 H 1.09001 * 109.46368 * 179.97438 * 1 2 3 24 24 H 1.08994 * 109.47070 * 299.99750 * 1 2 3 25 25 H 1.09001 * 109.46850 * 60.00279 * 1 2 3 26 26 H 1.08993 * 109.47580 * 240.00118 * 2 1 3 27 27 H 1.09001 * 109.47592 * 119.99675 * 2 1 3 28 28 H 1.00899 * 111.00284 * 303.95353 * 3 2 1 29 29 H 1.08996 * 109.47311 * 60.00128 * 4 3 2 30 30 H 1.08999 * 109.46847 * 299.99955 * 4 3 2 31 31 H 1.09000 * 109.47218 * 268.65988 * 6 5 4 32 32 H 1.08995 * 109.47223 * 28.65719 * 6 5 4 33 33 H 1.09001 * 109.47191 * 148.66467 * 6 5 4 34 34 H 1.08004 * 119.99754 * 352.58080 * 7 5 4 35 35 H 1.08002 * 120.03502 * 0.02562 * 9 8 7 36 36 H 1.07999 * 119.96602 * 180.25574 * 10 9 8 37 37 H 0.96999 * 119.99293 * 180.02562 * 16 15 13 38 38 H 1.07993 * 119.96433 * 180.02562 * 21 11 10 39 39 H 1.07996 * 120.03510 * 180.02562 * 22 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4882 1.4243 0.0006 5 6 3.9523 2.8580 0.0000 6 6 4.0768 3.6091 -1.3006 7 6 4.2514 3.4589 1.1441 8 6 4.8661 4.8021 1.1344 9 6 5.8114 5.1320 0.1609 10 6 6.3789 6.3874 0.1514 11 6 6.0200 7.3215 1.1167 12 8 6.5849 8.5551 1.1081 13 6 6.2887 9.3712 2.1394 14 1 5.5650 9.0644 2.8801 15 6 6.9130 10.6043 2.2491 16 7 7.7942 10.9780 1.3465 17 14 6.5020 11.7354 3.6778 18 1 7.4152 11.4502 4.8135 19 1 6.6665 13.1488 3.2532 20 1 5.0976 11.5062 4.1023 21 6 5.0831 6.9945 2.0906 22 6 4.5075 5.7427 2.1022 23 1 -0.3632 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.8934 -0.5138 -0.8899 27 1 1.8934 -0.5138 0.8900 28 1 1.6442 1.9013 -0.7813 29 1 3.8655 0.9202 -0.8891 30 1 3.8647 0.9205 0.8908 31 1 5.0879 3.4945 -1.6911 32 1 3.3620 3.2103 -2.0203 33 1 3.8705 4.6659 -1.1310 34 1 4.0495 2.9642 2.0827 35 1 6.0938 4.4053 -0.5865 36 1 7.1070 6.6446 -0.6037 37 1 8.2312 11.8406 1.4236 38 1 4.8062 7.7224 2.8387 39 1 3.7796 5.4894 2.8587 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000092731061.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:00 Heat of formation + Delta-G solvation = -14.589765 kcal Electronic energy + Delta-G solvation = -18422.076701 eV Core-core repulsion = 15522.507892 eV Total energy + Delta-G solvation = -2899.568809 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.81831 -39.02183 -37.73430 -35.45920 -34.23512 -31.94418 -31.57187 -29.80919 -28.19079 -27.18239 -25.46190 -23.48035 -22.92308 -22.44443 -19.91211 -19.45395 -18.50906 -16.91232 -16.66682 -16.33307 -16.08709 -15.90614 -15.58713 -15.51727 -15.03455 -14.59144 -14.45826 -14.14768 -13.86245 -13.65006 -13.53551 -13.04026 -12.86742 -12.73570 -12.60367 -12.49546 -12.31456 -12.19919 -12.11691 -11.94663 -11.60271 -11.20572 -10.83892 -10.03092 -9.78744 -9.33883 -8.56491 -8.47894 -6.15139 0.34568 0.61331 1.35130 1.40342 1.52653 1.58367 2.17624 2.85698 3.18376 3.42239 3.51073 3.88261 4.09091 4.15030 4.16141 4.25122 4.34445 4.41029 4.51363 4.63305 4.64227 4.73709 4.74743 4.86355 4.88813 5.01329 5.08064 5.13971 5.15847 5.22021 5.28601 5.34887 5.51873 5.67073 5.70202 5.83567 6.01820 6.08662 6.11856 6.23004 6.48027 6.96611 7.77011 8.75003 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.044378 B = 0.003226 C = 0.003082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 630.798082 B = 8676.861792 C = 9081.846178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.052 3.948 3 N -0.698 5.698 4 C 0.105 3.895 5 C -0.127 4.127 6 C -0.118 4.118 7 C -0.092 4.092 8 C -0.136 4.136 9 C -0.055 4.055 10 C -0.206 4.206 11 C 0.115 3.885 12 O -0.230 6.230 13 C -0.414 4.414 14 H 0.102 0.898 15 C -0.023 4.023 16 N -0.920 5.920 17 Si 1.019 2.981 18 H -0.263 1.263 19 H -0.270 1.270 20 H -0.253 1.253 21 C -0.244 4.244 22 C -0.061 4.061 23 H 0.071 0.929 24 H 0.054 0.946 25 H 0.054 0.946 26 H 0.034 0.966 27 H 0.070 0.930 28 H 0.343 0.657 29 H 0.047 0.953 30 H 0.077 0.923 31 H 0.074 0.926 32 H 0.069 0.931 33 H 0.052 0.948 34 H 0.122 0.878 35 H 0.150 0.850 36 H 0.115 0.885 37 H 0.273 0.727 38 H 0.119 0.881 39 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.226 -19.743 -2.091 22.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.077 4.077 3 N -0.330 5.330 4 C -0.023 4.023 5 C -0.127 4.127 6 C -0.174 4.174 7 C -0.111 4.111 8 C -0.137 4.137 9 C -0.072 4.072 10 C -0.225 4.225 11 C 0.065 3.935 12 O -0.136 6.136 13 C -0.490 4.490 14 H 0.119 0.881 15 C -0.220 4.220 16 N -0.558 5.558 17 Si 0.838 3.162 18 H -0.188 1.188 19 H -0.195 1.195 20 H -0.177 1.177 21 C -0.263 4.263 22 C -0.079 4.079 23 H 0.090 0.910 24 H 0.073 0.927 25 H 0.073 0.927 26 H 0.052 0.948 27 H 0.089 0.911 28 H 0.162 0.838 29 H 0.065 0.935 30 H 0.096 0.904 31 H 0.092 0.908 32 H 0.088 0.912 33 H 0.071 0.929 34 H 0.140 0.860 35 H 0.168 0.832 36 H 0.133 0.867 37 H 0.082 0.918 38 H 0.137 0.863 39 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -11.006 -19.416 -1.628 22.378 hybrid contribution 0.371 0.772 -0.338 0.921 sum -10.635 -18.644 -1.967 21.554 Atomic orbital electron populations 1.21749 0.94355 1.02347 1.02111 1.21979 0.96226 0.88799 1.00689 1.60579 1.07462 1.14311 1.50639 1.20851 0.87799 0.92312 1.01367 1.21930 1.00338 0.95694 0.94784 1.21001 1.02180 0.99413 0.94815 1.21352 0.99271 0.92245 0.98278 1.18913 1.01346 0.95386 0.98019 1.21274 0.94320 0.94138 0.97509 1.20402 1.06330 0.94145 1.01605 1.20025 0.92608 0.85807 0.95073 1.83917 1.63947 1.20715 1.45027 1.21835 1.25450 0.98074 1.03677 0.88109 1.26602 0.95262 0.98452 1.01711 1.70187 1.27098 1.22234 1.36266 0.84581 0.79538 0.76308 0.75757 1.18792 1.19508 1.17665 1.21190 1.02881 0.99507 1.02692 1.21186 0.97453 0.91533 0.97688 0.90981 0.92721 0.92658 0.94755 0.91125 0.83844 0.93509 0.90424 0.90802 0.91182 0.92944 0.86027 0.83242 0.86680 0.91789 0.86281 0.84419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.77 10.17 71.98 0.73 -1.04 16 2 C 0.05 0.71 6.41 86.30 0.55 1.26 16 3 N -0.70 -11.97 6.49 -517.92 -3.36 -15.33 16 4 C 0.11 1.84 5.84 85.56 0.50 2.34 16 5 C -0.13 -2.78 5.49 -17.61 -0.10 -2.87 16 6 C -0.12 -2.51 8.26 71.23 0.59 -1.92 16 7 C -0.09 -2.40 9.36 23.61 0.22 -2.18 16 8 C -0.14 -4.49 5.08 -20.09 -0.10 -4.60 16 9 C -0.05 -1.88 7.77 22.50 0.17 -1.71 16 10 C -0.21 -8.90 9.98 22.35 0.22 -8.67 16 11 C 0.12 5.86 6.65 22.65 0.15 6.01 16 12 O -0.23 -14.01 9.75 -21.80 -0.21 -14.22 16 13 C -0.41 -24.42 9.48 67.92 0.64 -23.78 16 14 H 0.10 5.47 5.19 -2.91 -0.02 5.45 16 15 C -0.02 -1.30 5.49 84.83 0.47 -0.84 16 16 N -0.92 -56.83 13.67 21.61 0.30 -56.53 16 17 Si 1.02 43.18 29.55 68.60 2.03 45.20 16 18 H -0.26 -10.59 7.11 99.48 0.71 -9.88 16 19 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 20 H -0.25 -9.97 7.11 99.48 0.71 -9.26 16 21 C -0.24 -10.92 9.15 22.35 0.20 -10.71 16 22 C -0.06 -2.21 9.78 22.50 0.22 -1.99 16 23 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 24 H 0.05 0.76 8.14 -2.39 -0.02 0.75 16 25 H 0.05 0.63 8.14 -2.39 -0.02 0.62 16 26 H 0.03 0.42 8.14 -2.39 -0.02 0.40 16 27 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 28 H 0.34 5.59 8.72 -89.69 -0.78 4.80 16 29 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.08 1.34 8.03 -2.39 -0.02 1.32 16 31 H 0.07 1.45 6.63 -2.39 -0.02 1.43 16 32 H 0.07 1.21 8.11 -2.39 -0.02 1.19 16 33 H 0.05 1.38 6.52 -2.39 -0.02 1.37 16 34 H 0.12 2.90 8.06 -2.91 -0.02 2.88 16 35 H 0.15 4.14 5.61 -2.91 -0.02 4.13 16 36 H 0.12 4.89 8.06 -2.91 -0.02 4.87 16 37 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 38 H 0.12 5.41 5.62 -2.91 -0.02 5.40 16 39 H 0.14 4.17 8.06 -2.91 -0.02 4.14 16 Total: -1.00 -68.82 325.48 3.49 -65.33 By element: Atomic # 1 Polarization: 25.99 SS G_CDS: 0.26 Total: 26.25 kcal Atomic # 6 Polarization: -55.18 SS G_CDS: 4.48 Total: -50.70 kcal Atomic # 7 Polarization: -68.80 SS G_CDS: -3.07 Total: -71.86 kcal Atomic # 8 Polarization: -14.01 SS G_CDS: -0.21 Total: -14.22 kcal Atomic # 14 Polarization: 43.18 SS G_CDS: 2.03 Total: 45.20 kcal Total: -68.82 3.49 -65.33 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092731061.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.740 kcal (2) G-P(sol) polarization free energy of solvation -68.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds