Wall clock time and date at job start Mon Mar 30 2020 06:25:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 109.47238 * 2 1 4 4 C 1.50698 * 109.46988 * 119.99891 * 2 1 3 5 5 H 1.08007 * 120.00097 * 120.00295 * 4 2 1 6 6 C 1.37881 * 120.00381 * 300.00265 * 4 2 1 7 7 N 1.31512 * 119.99666 * 359.97438 * 6 4 2 8 8 Si 1.86795 * 120.00189 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47360 * 359.97438 * 8 6 4 10 10 H 1.48496 * 109.47494 * 120.00043 * 8 6 4 11 11 H 1.48503 * 109.46818 * 240.00049 * 8 6 4 12 12 N 1.46897 * 109.47315 * 240.00296 * 2 1 3 13 13 C 1.47016 * 110.99785 * 306.04206 * 12 2 1 14 14 C 1.53103 * 109.29298 * 177.58836 * 13 12 2 15 15 O 1.43103 * 109.20778 * 56.83042 * 14 13 12 16 16 C 1.43016 * 113.76264 * 301.35437 * 15 14 13 17 17 H 1.08998 * 109.50869 * 298.73652 * 16 15 14 18 18 C 1.50696 * 109.50721 * 178.60979 * 16 15 14 19 19 C 1.38244 * 120.00115 * 324.94553 * 18 16 15 20 20 C 1.38226 * 120.00053 * 179.79096 * 19 18 16 21 21 C 1.38239 * 120.00375 * 0.43881 * 20 19 18 22 22 C 1.38233 * 119.99620 * 359.81546 * 21 20 19 23 23 C 1.38231 * 120.00110 * 359.97325 * 22 21 20 24 24 C 1.47015 * 110.99783 * 182.41278 * 12 2 1 25 25 H 1.08995 * 109.46957 * 299.99689 * 1 2 3 26 26 H 1.08994 * 109.46676 * 60.00248 * 1 2 3 27 27 H 1.08999 * 109.46789 * 179.97438 * 1 2 3 28 28 H 0.96999 * 120.00240 * 179.97438 * 7 6 4 29 29 H 1.09002 * 109.50934 * 297.54561 * 13 12 2 30 30 H 1.09003 * 109.50733 * 57.63155 * 13 12 2 31 31 H 1.09004 * 109.50456 * 176.81005 * 14 13 12 32 32 H 1.09008 * 109.50567 * 296.93791 * 14 13 12 33 33 H 1.08002 * 119.99266 * 359.97438 * 19 18 16 34 34 H 1.08002 * 120.00232 * 180.27487 * 20 19 18 35 35 H 1.08003 * 120.00090 * 179.83493 * 21 20 19 36 36 H 1.08007 * 119.99975 * 180.02562 * 22 21 20 37 37 H 1.08007 * 120.00011 * 180.02562 * 23 22 21 38 38 H 1.08998 * 109.50639 * 302.32307 * 24 12 2 39 39 H 1.08995 * 109.50980 * 62.45590 * 24 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6533 -1.5885 1.1314 6 6 1.6992 -0.2394 2.4828 7 7 0.9435 0.8302 2.6034 8 14 2.3224 -1.1195 4.0080 9 1 3.1474 -2.2863 3.6039 10 1 3.1471 -0.1858 4.8162 11 1 1.1677 -1.5867 4.8164 12 7 2.0197 -0.6924 -1.1994 13 6 1.4340 -2.0365 -1.3079 14 6 1.9224 -2.6985 -2.5991 15 8 3.3531 -2.7287 -2.6006 16 6 3.9569 -1.4364 -2.4970 17 1 3.6634 -0.8278 -3.3522 18 6 5.4566 -1.5822 -2.4731 19 6 6.0355 -2.6699 -1.8463 20 6 7.4110 -2.8058 -1.8282 21 6 8.2081 -1.8494 -2.4290 22 6 7.6295 -0.7591 -3.0513 23 6 6.2538 -0.6254 -3.0732 24 6 3.4882 -0.7622 -1.2048 25 1 -0.3633 0.5138 0.8900 26 1 -0.3632 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 0.7088 1.1613 3.4844 29 1 1.7411 -2.6375 -0.4520 30 1 0.3468 -1.9593 -1.3271 31 1 1.5356 -3.7160 -2.6552 32 1 1.5696 -2.1264 -3.4574 33 1 5.4129 -3.4149 -1.3733 34 1 7.8631 -3.6578 -1.3423 35 1 9.2829 -1.9543 -2.4125 36 1 8.2522 -0.0121 -3.5211 37 1 5.8017 0.2263 -3.5597 38 1 3.9007 0.2452 -1.1495 39 1 3.8281 -1.3429 -0.3473 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097078993.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:19 Heat of formation + Delta-G solvation = -12.932281 kcal Electronic energy + Delta-G solvation = -20009.705311 eV Core-core repulsion = 17110.208376 eV Total energy + Delta-G solvation = -2899.496935 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.69869 -38.30726 -35.75393 -32.58448 -32.45514 -30.74618 -29.32789 -29.10688 -25.62659 -25.12674 -23.44774 -22.45310 -21.72196 -20.17912 -19.25881 -16.92680 -16.32799 -15.86439 -15.63405 -15.10042 -14.68117 -14.38760 -14.10289 -13.90698 -13.54252 -13.20482 -13.14377 -12.67487 -12.45220 -12.11288 -11.47145 -11.29092 -11.14408 -10.94225 -10.86700 -10.76555 -10.68000 -10.41885 -10.23366 -9.86800 -9.71571 -9.32826 -9.15220 -8.76738 -8.46175 -8.42313 -7.23915 -6.02815 -4.15471 1.46762 1.56204 3.23902 3.32609 3.36622 3.86347 4.14904 4.37507 4.84802 5.04629 5.08478 5.19315 5.22834 5.29713 5.53158 5.58147 5.64642 5.73966 5.78952 5.85811 5.95940 6.10771 6.16658 6.20404 6.46188 6.59157 6.64991 6.67123 6.71434 6.82544 6.88064 6.98163 7.09355 7.13853 7.50597 7.59305 7.66972 7.88228 8.07583 8.24971 8.36210 8.93176 9.52397 10.97599 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.019243 B = 0.006337 C = 0.005436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1454.755334 B = 4417.775047 C = 5149.205571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.206 3.794 3 H 0.041 0.959 4 C -0.542 4.542 5 H 0.057 0.943 6 C 0.068 3.932 7 N -0.886 5.886 8 Si 0.887 3.113 9 H -0.274 1.274 10 H -0.283 1.283 11 H -0.283 1.283 12 N -0.536 5.536 13 C 0.020 3.980 14 C 0.065 3.935 15 O -0.385 6.385 16 C 0.132 3.868 17 H 0.067 0.933 18 C -0.070 4.070 19 C -0.091 4.091 20 C -0.125 4.125 21 C -0.126 4.126 22 C -0.124 4.124 23 C -0.110 4.110 24 C 0.042 3.958 25 H 0.085 0.915 26 H 0.015 0.985 27 H 0.028 0.972 28 H 0.261 0.739 29 H 0.046 0.954 30 H 0.081 0.919 31 H 0.088 0.912 32 H 0.050 0.950 33 H 0.126 0.874 34 H 0.119 0.881 35 H 0.117 0.883 36 H 0.120 0.880 37 H 0.122 0.878 38 H 0.073 0.927 39 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.184 -4.670 -10.305 13.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.100 3.900 3 H 0.058 0.942 4 C -0.581 4.581 5 H 0.075 0.925 6 C -0.134 4.134 7 N -0.525 5.525 8 Si 0.715 3.285 9 H -0.199 1.199 10 H -0.209 1.209 11 H -0.209 1.209 12 N -0.261 5.261 13 C -0.108 4.108 14 C -0.012 4.012 15 O -0.304 6.304 16 C 0.074 3.926 17 H 0.085 0.915 18 C -0.071 4.071 19 C -0.109 4.109 20 C -0.143 4.143 21 C -0.144 4.144 22 C -0.142 4.142 23 C -0.128 4.128 24 C -0.087 4.087 25 H 0.104 0.896 26 H 0.034 0.966 27 H 0.047 0.953 28 H 0.071 0.929 29 H 0.065 0.935 30 H 0.099 0.901 31 H 0.106 0.894 32 H 0.069 0.931 33 H 0.144 0.856 34 H 0.137 0.863 35 H 0.135 0.865 36 H 0.138 0.862 37 H 0.140 0.860 38 H 0.092 0.908 39 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 8.042 -4.434 -10.584 14.013 hybrid contribution 0.373 -0.650 1.812 1.961 sum 8.415 -5.083 -8.772 13.176 Atomic orbital electron populations 1.21851 0.97679 0.99187 1.00453 1.19298 0.92296 0.94155 0.84205 0.94155 1.21728 1.31800 1.12917 0.91655 0.92493 1.24901 0.94793 0.94825 0.98900 1.69883 1.36472 1.22733 1.23404 0.86615 0.78736 0.79819 0.83335 1.19889 1.20948 1.20947 1.62779 1.04747 1.16024 1.42511 1.22635 1.00375 0.91440 0.96396 1.22732 0.80321 1.00478 0.97672 1.87897 1.19779 1.28038 1.94702 1.20984 0.88292 0.84913 0.98414 0.91505 1.19698 0.94134 0.95396 0.97860 1.21052 0.94547 0.97572 0.97736 1.21147 0.93819 0.99266 1.00086 1.21106 0.99498 0.94955 0.98807 1.21035 0.94648 0.98198 1.00339 1.20952 0.93619 0.98734 0.99517 1.22471 0.90451 1.00509 0.95287 0.89623 0.96593 0.95291 0.92917 0.93547 0.90100 0.89358 0.93138 0.85573 0.86296 0.86460 0.86205 0.85958 0.90822 0.92979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.19 8.54 37.16 0.32 -2.87 16 2 C 0.21 5.13 2.48 -68.87 -0.17 4.96 16 3 H 0.04 1.11 8.14 -51.93 -0.42 0.69 16 4 C -0.54 -14.54 7.12 -34.44 -0.25 -14.79 16 5 H 0.06 1.56 5.79 -52.48 -0.30 1.26 16 6 C 0.07 1.86 5.30 -17.82 -0.09 1.77 16 7 N -0.89 -24.93 11.32 55.43 0.63 -24.30 16 8 Si 0.89 21.27 29.54 -169.99 -5.02 16.24 16 9 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 10 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 11 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 12 N -0.54 -11.45 4.77 -227.71 -1.09 -12.54 16 13 C 0.02 0.39 4.91 -3.71 -0.02 0.38 16 14 C 0.06 1.05 7.02 37.21 0.26 1.31 16 15 O -0.38 -6.79 9.62 -35.23 -0.34 -7.12 16 16 C 0.13 2.26 3.02 -27.83 -0.08 2.18 16 17 H 0.07 1.10 8.05 -51.93 -0.42 0.68 16 18 C -0.07 -1.11 5.01 -104.62 -0.52 -1.63 16 19 C -0.09 -1.40 9.35 -39.58 -0.37 -1.77 16 20 C -0.13 -1.64 10.05 -39.59 -0.40 -2.04 16 21 C -0.13 -1.50 10.05 -39.58 -0.40 -1.90 16 22 C -0.12 -1.50 10.05 -39.59 -0.40 -1.90 16 23 C -0.11 -1.51 9.68 -39.58 -0.38 -1.89 16 24 C 0.04 0.84 4.54 -3.71 -0.02 0.82 16 25 H 0.09 2.25 6.07 -51.93 -0.32 1.93 16 26 H 0.01 0.34 8.14 -51.93 -0.42 -0.09 16 27 H 0.03 0.65 6.27 -51.93 -0.33 0.33 16 28 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 29 H 0.05 1.00 6.93 -51.93 -0.36 0.64 16 30 H 0.08 1.53 6.07 -51.93 -0.32 1.22 16 31 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 32 H 0.05 0.77 8.14 -51.92 -0.42 0.35 16 33 H 0.13 2.00 7.63 -52.49 -0.40 1.60 16 34 H 0.12 1.29 8.06 -52.49 -0.42 0.87 16 35 H 0.12 1.09 8.06 -52.48 -0.42 0.67 16 36 H 0.12 1.14 8.06 -52.48 -0.42 0.71 16 37 H 0.12 1.47 8.06 -52.48 -0.42 1.05 16 38 H 0.07 1.49 8.14 -51.93 -0.42 1.07 16 39 H 0.05 1.17 6.42 -51.93 -0.33 0.84 16 LS Contribution 308.17 15.07 4.64 4.64 Total: -1.00 -28.66 308.17 -9.41 -38.07 By element: Atomic # 1 Polarization: 8.09 SS G_CDS: -5.71 Total: 2.38 kcal Atomic # 6 Polarization: -14.85 SS G_CDS: -2.52 Total: -17.37 kcal Atomic # 7 Polarization: -36.38 SS G_CDS: -0.46 Total: -36.84 kcal Atomic # 8 Polarization: -6.79 SS G_CDS: -0.34 Total: -7.12 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -28.66 -9.41 -38.07 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097078993.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.136 kcal (2) G-P(sol) polarization free energy of solvation -28.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.069 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds