Wall clock time and date at job start Mon Mar 30 2020 06:25:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 109.47238 * 2 1 4 4 C 1.50698 * 109.46988 * 119.99891 * 2 1 3 5 5 H 1.08007 * 120.00097 * 120.00295 * 4 2 1 6 6 C 1.37881 * 120.00381 * 300.00265 * 4 2 1 7 7 N 1.31512 * 119.99666 * 359.97438 * 6 4 2 8 8 Si 1.86795 * 120.00189 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47360 * 359.97438 * 8 6 4 10 10 H 1.48496 * 109.47494 * 120.00043 * 8 6 4 11 11 H 1.48503 * 109.46818 * 240.00049 * 8 6 4 12 12 N 1.46897 * 109.47315 * 240.00296 * 2 1 3 13 13 C 1.47016 * 110.99785 * 306.04206 * 12 2 1 14 14 C 1.53103 * 109.29298 * 177.58836 * 13 12 2 15 15 O 1.43103 * 109.20778 * 56.83042 * 14 13 12 16 16 C 1.43016 * 113.76264 * 301.35437 * 15 14 13 17 17 H 1.08998 * 109.50869 * 298.73652 * 16 15 14 18 18 C 1.50696 * 109.50721 * 178.60979 * 16 15 14 19 19 C 1.38244 * 120.00115 * 324.94553 * 18 16 15 20 20 C 1.38226 * 120.00053 * 179.79096 * 19 18 16 21 21 C 1.38239 * 120.00375 * 0.43881 * 20 19 18 22 22 C 1.38233 * 119.99620 * 359.81546 * 21 20 19 23 23 C 1.38231 * 120.00110 * 359.97325 * 22 21 20 24 24 C 1.47015 * 110.99783 * 182.41278 * 12 2 1 25 25 H 1.08995 * 109.46957 * 299.99689 * 1 2 3 26 26 H 1.08994 * 109.46676 * 60.00248 * 1 2 3 27 27 H 1.08999 * 109.46789 * 179.97438 * 1 2 3 28 28 H 0.96999 * 120.00240 * 179.97438 * 7 6 4 29 29 H 1.09002 * 109.50934 * 297.54561 * 13 12 2 30 30 H 1.09003 * 109.50733 * 57.63155 * 13 12 2 31 31 H 1.09004 * 109.50456 * 176.81005 * 14 13 12 32 32 H 1.09008 * 109.50567 * 296.93791 * 14 13 12 33 33 H 1.08002 * 119.99266 * 359.97438 * 19 18 16 34 34 H 1.08002 * 120.00232 * 180.27487 * 20 19 18 35 35 H 1.08003 * 120.00090 * 179.83493 * 21 20 19 36 36 H 1.08007 * 119.99975 * 180.02562 * 22 21 20 37 37 H 1.08007 * 120.00011 * 180.02562 * 23 22 21 38 38 H 1.08998 * 109.50639 * 302.32307 * 24 12 2 39 39 H 1.08995 * 109.50980 * 62.45590 * 24 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6533 -1.5885 1.1314 6 6 1.6992 -0.2394 2.4828 7 7 0.9435 0.8302 2.6034 8 14 2.3224 -1.1195 4.0080 9 1 3.1474 -2.2863 3.6039 10 1 3.1471 -0.1858 4.8162 11 1 1.1677 -1.5867 4.8164 12 7 2.0197 -0.6924 -1.1994 13 6 1.4340 -2.0365 -1.3079 14 6 1.9224 -2.6985 -2.5991 15 8 3.3531 -2.7287 -2.6006 16 6 3.9569 -1.4364 -2.4970 17 1 3.6634 -0.8278 -3.3522 18 6 5.4566 -1.5822 -2.4731 19 6 6.0355 -2.6699 -1.8463 20 6 7.4110 -2.8058 -1.8282 21 6 8.2081 -1.8494 -2.4290 22 6 7.6295 -0.7591 -3.0513 23 6 6.2538 -0.6254 -3.0732 24 6 3.4882 -0.7622 -1.2048 25 1 -0.3633 0.5138 0.8900 26 1 -0.3632 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 0.7088 1.1613 3.4844 29 1 1.7411 -2.6375 -0.4520 30 1 0.3468 -1.9593 -1.3271 31 1 1.5356 -3.7160 -2.6552 32 1 1.5696 -2.1264 -3.4574 33 1 5.4129 -3.4149 -1.3733 34 1 7.8631 -3.6578 -1.3423 35 1 9.2829 -1.9543 -2.4125 36 1 8.2522 -0.0121 -3.5211 37 1 5.8017 0.2263 -3.5597 38 1 3.9007 0.2452 -1.1495 39 1 3.8281 -1.3429 -0.3473 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000097078993.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:18 Heat of formation + Delta-G solvation = -30.014986 kcal Electronic energy + Delta-G solvation = -20010.446073 eV Core-core repulsion = 17110.208376 eV Total energy + Delta-G solvation = -2900.237697 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.03437 -39.55506 -37.44608 -34.53246 -33.73935 -31.76736 -31.19490 -30.43366 -27.38634 -26.95691 -24.92756 -23.57194 -23.07635 -21.59701 -21.02878 -18.41199 -18.00997 -17.19974 -17.17305 -16.45689 -16.31095 -15.94964 -15.36255 -15.30616 -15.10282 -14.91679 -14.27123 -14.20067 -13.62286 -13.60003 -13.29188 -13.08492 -12.79937 -12.70974 -12.38355 -12.33476 -12.19741 -11.98623 -11.91001 -11.68244 -11.31625 -11.24085 -10.60043 -10.53539 -9.79189 -9.60513 -9.09255 -8.10945 -6.32114 0.41672 0.53400 1.31518 1.34655 1.44519 2.35339 2.70860 2.94489 3.09587 3.26914 3.89300 4.01971 4.06176 4.17891 4.25338 4.29606 4.33354 4.40100 4.52294 4.64190 4.68140 4.74142 4.83802 4.93387 5.03141 5.06166 5.09756 5.13185 5.15510 5.21013 5.46699 5.58282 5.63447 5.63842 5.68966 5.91701 6.08193 6.13118 6.23324 6.27966 6.48419 6.85152 7.38578 8.86353 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.019243 B = 0.006337 C = 0.005436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1454.755334 B = 4417.775047 C = 5149.205571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.209 3.791 3 H 0.007 0.993 4 C -0.549 4.549 5 H 0.044 0.956 6 C 0.023 3.977 7 N -0.910 5.910 8 Si 0.946 3.054 9 H -0.276 1.276 10 H -0.279 1.279 11 H -0.276 1.276 12 N -0.534 5.534 13 C 0.022 3.978 14 C 0.069 3.931 15 O -0.393 6.393 16 C 0.143 3.857 17 H 0.077 0.923 18 C -0.096 4.096 19 C -0.114 4.114 20 C -0.131 4.131 21 C -0.121 4.121 22 C -0.122 4.122 23 C -0.118 4.118 24 C 0.049 3.951 25 H 0.061 0.939 26 H 0.033 0.967 27 H 0.035 0.965 28 H 0.263 0.737 29 H 0.018 0.982 30 H 0.087 0.913 31 H 0.118 0.882 32 H 0.067 0.933 33 H 0.109 0.891 34 H 0.139 0.861 35 H 0.150 0.850 36 H 0.152 0.848 37 H 0.136 0.864 38 H 0.065 0.935 39 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.603 -5.275 -11.418 15.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.102 3.898 3 H 0.025 0.975 4 C -0.588 4.588 5 H 0.062 0.938 6 C -0.177 4.177 7 N -0.549 5.549 8 Si 0.772 3.228 9 H -0.201 1.201 10 H -0.205 1.205 11 H -0.201 1.201 12 N -0.258 5.258 13 C -0.107 4.107 14 C -0.007 4.007 15 O -0.312 6.312 16 C 0.085 3.915 17 H 0.095 0.905 18 C -0.096 4.096 19 C -0.132 4.132 20 C -0.149 4.149 21 C -0.139 4.139 22 C -0.140 4.140 23 C -0.136 4.136 24 C -0.080 4.080 25 H 0.079 0.921 26 H 0.052 0.948 27 H 0.054 0.946 28 H 0.073 0.927 29 H 0.037 0.963 30 H 0.105 0.895 31 H 0.136 0.864 32 H 0.085 0.915 33 H 0.127 0.873 34 H 0.157 0.843 35 H 0.168 0.832 36 H 0.169 0.831 37 H 0.154 0.846 38 H 0.083 0.917 39 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges 9.460 -5.047 -11.708 15.877 hybrid contribution -0.013 -0.446 2.130 2.176 sum 9.448 -5.493 -9.579 14.532 Atomic orbital electron populations 1.21665 0.96804 0.99424 1.00057 1.19107 0.92944 0.92644 0.85110 0.97467 1.21866 1.31604 1.12555 0.92810 0.93780 1.25582 0.95080 0.95545 1.01478 1.69988 1.37183 1.23666 1.24083 0.85699 0.78333 0.78654 0.80135 1.20131 1.20467 1.20124 1.62725 1.05583 1.17161 1.40309 1.22701 1.00653 0.89967 0.97351 1.22842 0.79706 1.02108 0.96065 1.87910 1.20493 1.28355 1.94484 1.20877 0.89550 0.84536 0.96531 0.90501 1.19714 0.93323 0.96742 0.99845 1.21072 0.95748 0.97638 0.98740 1.21421 0.92934 1.00391 1.00106 1.21534 1.01116 0.94033 0.97235 1.21449 0.94207 0.98784 0.99560 1.21201 0.94511 0.98567 0.99349 1.22419 0.89541 0.99835 0.96216 0.92051 0.94841 0.94615 0.92723 0.96326 0.89529 0.86435 0.91466 0.87305 0.84346 0.83193 0.83067 0.84631 0.91699 0.96146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.86 8.54 71.98 0.61 -5.24 16 2 C 0.21 10.70 2.48 44.17 0.11 10.80 16 3 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 4 C -0.55 -30.38 7.12 25.60 0.18 -30.20 16 5 H 0.04 2.51 5.79 -2.91 -0.02 2.50 16 6 C 0.02 1.29 5.30 84.66 0.45 1.74 16 7 N -0.91 -52.09 11.32 21.45 0.24 -51.85 16 8 Si 0.95 44.26 29.54 68.60 2.03 46.29 16 9 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 10 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 11 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 12 N -0.53 -23.21 4.77 -874.35 -4.17 -27.39 16 13 C 0.02 0.85 4.91 86.32 0.42 1.27 16 14 C 0.07 2.15 7.02 72.02 0.51 2.65 16 15 O -0.39 -13.66 9.62 -148.98 -1.43 -15.10 16 16 C 0.14 4.89 3.02 29.88 0.09 4.98 16 17 H 0.08 2.46 8.05 -2.39 -0.02 2.44 16 18 C -0.10 -2.99 5.01 -19.86 -0.10 -3.09 16 19 C -0.11 -3.50 9.35 22.27 0.21 -3.29 16 20 C -0.13 -3.22 10.05 22.27 0.22 -2.99 16 21 C -0.12 -2.53 10.05 22.27 0.22 -2.30 16 22 C -0.12 -2.60 10.05 22.27 0.22 -2.37 16 23 C -0.12 -3.05 9.68 22.27 0.22 -2.84 16 24 C 0.05 2.03 4.54 86.32 0.39 2.42 16 25 H 0.06 3.27 6.07 -2.39 -0.01 3.26 16 26 H 0.03 1.45 8.14 -2.39 -0.02 1.43 16 27 H 0.03 1.63 6.27 -2.39 -0.01 1.61 16 28 H 0.26 14.29 8.31 -92.71 -0.77 13.52 16 29 H 0.02 0.82 6.93 -2.39 -0.02 0.80 16 30 H 0.09 3.23 6.07 -2.39 -0.01 3.21 16 31 H 0.12 2.97 8.14 -2.38 -0.02 2.95 16 32 H 0.07 1.90 8.14 -2.38 -0.02 1.88 16 33 H 0.11 3.60 7.63 -2.91 -0.02 3.58 16 34 H 0.14 2.75 8.06 -2.91 -0.02 2.72 16 35 H 0.15 2.13 8.06 -2.91 -0.02 2.10 16 36 H 0.15 2.23 8.06 -2.91 -0.02 2.21 16 37 H 0.14 3.02 8.06 -2.91 -0.02 3.00 16 38 H 0.06 2.74 8.14 -2.39 -0.02 2.72 16 39 H 0.02 0.97 6.42 -2.39 -0.02 0.95 16 Total: -1.00 -62.78 308.17 1.45 -61.33 By element: Atomic # 1 Polarization: 14.14 SS G_CDS: 1.03 Total: 15.17 kcal Atomic # 6 Polarization: -32.21 SS G_CDS: 3.76 Total: -28.45 kcal Atomic # 7 Polarization: -75.31 SS G_CDS: -3.93 Total: -79.24 kcal Atomic # 8 Polarization: -13.66 SS G_CDS: -1.43 Total: -15.10 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 2.03 Total: 46.29 kcal Total: -62.78 1.45 -61.33 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097078993.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.315 kcal (2) G-P(sol) polarization free energy of solvation -62.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds