Wall clock time and date at job start Mon Mar 30 2020 06:33:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46493 * 109.47207 * 2 1 4 4 C 1.37105 * 119.99938 * 263.64174 * 3 2 1 5 5 H 1.07997 * 119.99700 * 194.52268 * 4 3 2 6 6 C 1.38953 * 119.99889 * 14.52637 * 4 3 2 7 7 N 1.31410 * 119.99935 * 13.19092 * 6 4 3 8 8 Si 1.86803 * 119.99712 * 193.19657 * 6 4 3 9 9 H 1.48504 * 109.46969 * 89.99818 * 8 6 4 10 10 H 1.48498 * 109.47090 * 209.99593 * 8 6 4 11 11 H 1.48492 * 109.47103 * 329.99673 * 8 6 4 12 12 C 1.34777 * 120.00187 * 83.64237 * 3 2 1 13 13 O 1.21294 * 119.99766 * 5.29180 * 12 3 2 14 14 C 1.50693 * 120.00244 * 185.28837 * 12 3 2 15 15 H 1.09002 * 109.47073 * 49.16250 * 14 12 3 16 16 C 1.53007 * 109.47304 * 289.16580 * 14 12 3 17 17 C 1.52996 * 109.47586 * 169.16369 * 14 12 3 18 18 C 1.50696 * 109.47697 * 185.00396 * 17 14 12 19 19 C 1.38234 * 120.00466 * 89.99610 * 18 17 14 20 20 C 1.38230 * 120.00235 * 180.28264 * 19 18 17 21 21 C 1.38241 * 119.99984 * 359.48294 * 20 19 18 22 22 C 1.38239 * 119.99892 * 0.51834 * 21 20 19 23 23 C 1.38240 * 119.99531 * 270.02439 * 18 17 14 24 24 H 1.08999 * 109.46636 * 53.20617 * 1 2 3 25 25 H 1.09004 * 109.47231 * 173.20145 * 1 2 3 26 26 H 1.08991 * 109.46996 * 293.20423 * 1 2 3 27 27 H 1.09002 * 109.46810 * 239.99409 * 2 1 3 28 28 H 1.09003 * 109.46883 * 120.00163 * 2 1 3 29 29 H 0.97000 * 119.99232 * 180.02562 * 7 6 4 30 30 H 1.09004 * 109.46694 * 294.14737 * 16 14 12 31 31 H 1.09000 * 109.47223 * 54.14669 * 16 14 12 32 32 H 1.09000 * 109.46957 * 174.15231 * 16 14 12 33 33 H 1.08998 * 109.47168 * 64.99892 * 17 14 12 34 34 H 1.09001 * 109.46926 * 305.00096 * 17 14 12 35 35 H 1.08005 * 119.99858 * 0.02562 * 19 18 17 36 36 H 1.07998 * 120.00057 * 179.73133 * 20 19 18 37 37 H 1.08000 * 120.00491 * 180.23695 * 21 20 19 38 38 H 1.07995 * 119.99978 * 179.71670 * 22 21 20 39 39 H 1.08001 * 120.00313 * 359.97438 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.3709 1.9836 -1.1801 5 1 2.9436 2.8992 -1.1689 6 6 1.9912 1.4162 -2.3903 7 7 1.0878 0.4622 -2.4140 8 14 2.7651 2.0096 -3.9836 9 1 3.9805 1.2067 -4.2725 10 1 1.7926 1.8528 -5.0948 11 1 3.1376 3.4408 -3.8500 12 6 2.1212 2.0596 1.1600 13 8 1.9016 1.4981 2.2125 14 6 2.5089 3.5158 1.1495 15 1 1.8932 4.0505 0.4262 16 6 3.9829 3.6483 0.7611 17 6 2.2929 4.1112 2.5421 18 6 2.5629 5.5933 2.5023 19 6 1.5371 6.4755 2.2191 20 6 1.7860 7.8345 2.1768 21 6 3.0587 8.3122 2.4283 22 6 4.0846 7.4300 2.7115 23 6 3.8368 6.0705 2.7484 24 1 -0.3632 0.6155 -0.8230 25 1 -0.3634 -1.0205 -0.1217 26 1 -0.3633 0.4049 0.9445 27 1 1.8933 -0.5139 -0.8900 28 1 1.8934 -0.5139 0.8900 29 1 0.8230 0.0660 -3.2589 30 1 4.6047 3.2035 1.5381 31 1 4.1576 3.1330 -0.1834 32 1 4.2365 4.7028 0.6522 33 1 2.9730 3.6369 3.2496 34 1 1.2635 3.9379 2.8557 35 1 0.5418 6.1026 2.0268 36 1 0.9855 8.5234 1.9513 37 1 3.2525 9.3743 2.3990 38 1 5.0798 7.8029 2.9034 39 1 4.6383 5.3813 2.9696 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000112009193.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:33:45 Heat of formation + Delta-G solvation = -10.477852 kcal Electronic energy + Delta-G solvation = -19840.381779 eV Core-core repulsion = 16940.991276 eV Total energy + Delta-G solvation = -2899.390503 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.43636 -38.48844 -35.21963 -34.17546 -31.49107 -30.89374 -30.69221 -29.14788 -26.28419 -24.87447 -23.34911 -22.31575 -21.57595 -20.17262 -18.83641 -16.90848 -16.61328 -16.01224 -15.02413 -14.87169 -14.40164 -14.28850 -13.92907 -13.36849 -13.26734 -12.97850 -12.64285 -12.38253 -12.27938 -12.05399 -11.68802 -11.34510 -11.23403 -11.06631 -10.91916 -10.73803 -10.66079 -10.62971 -10.29906 -10.23448 -9.93163 -9.69273 -8.88685 -8.75262 -8.50252 -8.18365 -7.71182 -6.30801 -3.89625 1.54660 1.56511 3.09629 3.19777 3.21002 3.92675 3.97074 4.07742 4.79646 5.03786 5.08265 5.09339 5.20083 5.33755 5.58207 5.68118 5.70625 5.79953 5.90417 6.12598 6.16621 6.30404 6.34265 6.46461 6.49959 6.62420 6.64784 6.69680 6.78741 6.81016 6.85199 6.90991 6.99853 7.09988 7.19649 7.39098 7.50886 7.79434 7.84399 8.47943 9.09146 9.58874 9.98843 10.64683 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.021089 B = 0.005957 C = 0.005160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1327.409241 B = 4699.143370 C = 5425.482809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.134 3.866 3 N -0.440 5.440 4 C -0.333 4.333 5 H 0.108 0.892 6 C 0.031 3.969 7 N -0.865 5.865 8 Si 0.919 3.081 9 H -0.278 1.278 10 H -0.284 1.284 11 H -0.270 1.270 12 C 0.458 3.542 13 O -0.613 6.613 14 C -0.084 4.084 15 H 0.086 0.914 16 C -0.149 4.149 17 C -0.061 4.061 18 C -0.065 4.065 19 C -0.118 4.118 20 C -0.120 4.120 21 C -0.134 4.134 22 C -0.122 4.122 23 C -0.116 4.116 24 H 0.081 0.919 25 H 0.033 0.967 26 H 0.021 0.979 27 H 0.099 0.901 28 H 0.032 0.968 29 H 0.266 0.734 30 H 0.048 0.952 31 H 0.079 0.921 32 H 0.052 0.948 33 H 0.074 0.926 34 H 0.073 0.927 35 H 0.121 0.879 36 H 0.117 0.883 37 H 0.115 0.885 38 H 0.117 0.883 39 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.260 10.282 4.078 11.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.011 3.989 3 N -0.157 5.157 4 C -0.461 4.461 5 H 0.125 0.875 6 C -0.172 4.172 7 N -0.504 5.504 8 Si 0.746 3.254 9 H -0.204 1.204 10 H -0.209 1.209 11 H -0.195 1.195 12 C 0.247 3.753 13 O -0.500 6.500 14 C -0.105 4.105 15 H 0.104 0.896 16 C -0.207 4.207 17 C -0.099 4.099 18 C -0.065 4.065 19 C -0.136 4.136 20 C -0.139 4.139 21 C -0.152 4.152 22 C -0.140 4.140 23 C -0.134 4.134 24 H 0.100 0.900 25 H 0.052 0.948 26 H 0.040 0.960 27 H 0.117 0.883 28 H 0.051 0.949 29 H 0.077 0.923 30 H 0.067 0.933 31 H 0.098 0.902 32 H 0.071 0.929 33 H 0.093 0.907 34 H 0.091 0.909 35 H 0.139 0.861 36 H 0.135 0.865 37 H 0.133 0.867 38 H 0.135 0.865 39 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 3.048 9.847 4.397 11.207 hybrid contribution 0.259 0.297 -1.055 1.126 sum 3.307 10.144 3.342 11.181 Atomic orbital electron populations 1.21920 0.97005 1.00064 1.00211 1.21214 0.94228 0.83310 1.00129 1.43796 1.55225 1.11320 1.05392 1.19998 1.33045 1.10185 0.82843 0.87482 1.25287 0.95582 0.96929 0.99446 1.70147 1.27584 1.26054 1.26585 0.86037 0.78860 0.79182 0.81289 1.20366 1.20934 1.19466 1.20043 0.83096 0.88256 0.83936 1.90506 1.57708 1.70509 1.31290 1.20898 0.98201 0.94894 0.96507 0.89593 1.21968 0.94625 1.01283 1.02807 1.20436 1.02964 0.89131 0.97361 1.20099 0.93283 0.96189 0.96944 1.21122 0.99252 0.93074 1.00153 1.21097 0.96864 0.95487 1.00404 1.21051 0.93408 0.99256 1.01522 1.21097 0.98827 0.93506 1.00614 1.21105 0.96555 0.95276 1.00425 0.90001 0.94766 0.96028 0.88341 0.94945 0.92303 0.93285 0.90227 0.92891 0.90711 0.90867 0.86096 0.86474 0.86672 0.86519 0.86137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.18 9.49 37.16 0.35 -2.82 16 2 C 0.13 3.35 5.28 -4.04 -0.02 3.33 16 3 N -0.44 -11.11 2.64 -114.81 -0.30 -11.41 16 4 C -0.33 -8.23 8.47 -14.93 -0.13 -8.35 16 5 H 0.11 2.49 4.57 -52.49 -0.24 2.25 16 6 C 0.03 0.77 5.12 -17.47 -0.09 0.68 16 7 N -0.86 -21.74 8.17 55.50 0.45 -21.28 16 8 Si 0.92 19.13 29.57 -169.99 -5.03 14.11 16 9 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 10 H -0.28 -5.96 7.11 56.52 0.40 -5.55 16 11 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 12 C 0.46 11.13 6.88 -10.99 -0.08 11.05 16 13 O -0.61 -16.32 15.70 5.54 0.09 -16.23 16 14 C -0.08 -1.66 1.89 -91.77 -0.17 -1.83 16 15 H 0.09 1.75 7.76 -51.93 -0.40 1.35 16 16 C -0.15 -2.67 8.17 37.16 0.30 -2.37 16 17 C -0.06 -1.08 4.14 -27.89 -0.12 -1.19 16 18 C -0.07 -0.99 4.72 -104.62 -0.49 -1.49 16 19 C -0.12 -1.68 9.70 -39.59 -0.38 -2.07 16 20 C -0.12 -1.50 10.05 -39.58 -0.40 -1.90 16 21 C -0.13 -1.58 10.05 -39.58 -0.40 -1.98 16 22 C -0.12 -1.49 10.05 -39.58 -0.40 -1.89 16 23 C -0.12 -1.59 8.12 -39.58 -0.32 -1.91 16 24 H 0.08 2.08 6.47 -51.93 -0.34 1.75 16 25 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 26 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.10 2.54 5.88 -51.93 -0.31 2.23 16 28 H 0.03 0.81 7.55 -51.93 -0.39 0.42 16 29 H 0.27 6.39 8.31 -40.82 -0.34 6.05 16 30 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.08 1.53 5.36 -51.93 -0.28 1.25 16 32 H 0.05 0.84 6.66 -51.93 -0.35 0.49 16 33 H 0.07 1.34 8.06 -51.93 -0.42 0.92 16 34 H 0.07 1.34 8.05 -51.93 -0.42 0.93 16 35 H 0.12 1.64 8.06 -52.48 -0.42 1.22 16 36 H 0.12 1.20 8.06 -52.49 -0.42 0.77 16 37 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 38 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16 39 H 0.12 1.54 8.04 -52.49 -0.42 1.12 16 LS Contribution 312.90 15.07 4.72 4.72 Total: -1.00 -27.92 312.90 -8.07 -35.99 By element: Atomic # 1 Polarization: 12.52 SS G_CDS: -5.65 Total: 6.87 kcal Atomic # 6 Polarization: -10.42 SS G_CDS: -2.34 Total: -12.75 kcal Atomic # 7 Polarization: -32.84 SS G_CDS: 0.15 Total: -32.69 kcal Atomic # 8 Polarization: -16.32 SS G_CDS: 0.09 Total: -16.23 kcal Atomic # 14 Polarization: 19.13 SS G_CDS: -5.03 Total: 14.11 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -27.92 -8.07 -35.99 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000112009193.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.509 kcal (2) G-P(sol) polarization free energy of solvation -27.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds