Wall clock time and date at job start Mon Mar 30 2020 06:33:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46493 * 109.47207 * 2 1 4 4 C 1.37105 * 119.99938 * 263.64174 * 3 2 1 5 5 H 1.07997 * 119.99700 * 194.52268 * 4 3 2 6 6 C 1.38953 * 119.99889 * 14.52637 * 4 3 2 7 7 N 1.31410 * 119.99935 * 13.19092 * 6 4 3 8 8 Si 1.86803 * 119.99712 * 193.19657 * 6 4 3 9 9 H 1.48504 * 109.46969 * 89.99818 * 8 6 4 10 10 H 1.48498 * 109.47090 * 209.99593 * 8 6 4 11 11 H 1.48492 * 109.47103 * 329.99673 * 8 6 4 12 12 C 1.34777 * 120.00187 * 83.64237 * 3 2 1 13 13 O 1.21294 * 119.99766 * 5.29180 * 12 3 2 14 14 C 1.50693 * 120.00244 * 185.28837 * 12 3 2 15 15 H 1.09002 * 109.47073 * 49.16250 * 14 12 3 16 16 C 1.53007 * 109.47304 * 289.16580 * 14 12 3 17 17 C 1.52996 * 109.47586 * 169.16369 * 14 12 3 18 18 C 1.50696 * 109.47697 * 185.00396 * 17 14 12 19 19 C 1.38234 * 120.00466 * 89.99610 * 18 17 14 20 20 C 1.38230 * 120.00235 * 180.28264 * 19 18 17 21 21 C 1.38241 * 119.99984 * 359.48294 * 20 19 18 22 22 C 1.38239 * 119.99892 * 0.51834 * 21 20 19 23 23 C 1.38240 * 119.99531 * 270.02439 * 18 17 14 24 24 H 1.08999 * 109.46636 * 53.20617 * 1 2 3 25 25 H 1.09004 * 109.47231 * 173.20145 * 1 2 3 26 26 H 1.08991 * 109.46996 * 293.20423 * 1 2 3 27 27 H 1.09002 * 109.46810 * 239.99409 * 2 1 3 28 28 H 1.09003 * 109.46883 * 120.00163 * 2 1 3 29 29 H 0.97000 * 119.99232 * 180.02562 * 7 6 4 30 30 H 1.09004 * 109.46694 * 294.14737 * 16 14 12 31 31 H 1.09000 * 109.47223 * 54.14669 * 16 14 12 32 32 H 1.09000 * 109.46957 * 174.15231 * 16 14 12 33 33 H 1.08998 * 109.47168 * 64.99892 * 17 14 12 34 34 H 1.09001 * 109.46926 * 305.00096 * 17 14 12 35 35 H 1.08005 * 119.99858 * 0.02562 * 19 18 17 36 36 H 1.07998 * 120.00057 * 179.73133 * 20 19 18 37 37 H 1.08000 * 120.00491 * 180.23695 * 21 20 19 38 38 H 1.07995 * 119.99978 * 179.71670 * 22 21 20 39 39 H 1.08001 * 120.00313 * 359.97438 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.3709 1.9836 -1.1801 5 1 2.9436 2.8992 -1.1689 6 6 1.9912 1.4162 -2.3903 7 7 1.0878 0.4622 -2.4140 8 14 2.7651 2.0096 -3.9836 9 1 3.9805 1.2067 -4.2725 10 1 1.7926 1.8528 -5.0948 11 1 3.1376 3.4408 -3.8500 12 6 2.1212 2.0596 1.1600 13 8 1.9016 1.4981 2.2125 14 6 2.5089 3.5158 1.1495 15 1 1.8932 4.0505 0.4262 16 6 3.9829 3.6483 0.7611 17 6 2.2929 4.1112 2.5421 18 6 2.5629 5.5933 2.5023 19 6 1.5371 6.4755 2.2191 20 6 1.7860 7.8345 2.1768 21 6 3.0587 8.3122 2.4283 22 6 4.0846 7.4300 2.7115 23 6 3.8368 6.0705 2.7484 24 1 -0.3632 0.6155 -0.8230 25 1 -0.3634 -1.0205 -0.1217 26 1 -0.3633 0.4049 0.9445 27 1 1.8933 -0.5139 -0.8900 28 1 1.8934 -0.5139 0.8900 29 1 0.8230 0.0660 -3.2589 30 1 4.6047 3.2035 1.5381 31 1 4.1576 3.1330 -0.1834 32 1 4.2365 4.7028 0.6522 33 1 2.9730 3.6369 3.2496 34 1 1.2635 3.9379 2.8557 35 1 0.5418 6.1026 2.0268 36 1 0.9855 8.5234 1.9513 37 1 3.2525 9.3743 2.3990 38 1 5.0798 7.8029 2.9034 39 1 4.6383 5.3813 2.9696 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000112009193.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:33:45 Heat of formation + Delta-G solvation = -23.351343 kcal Electronic energy + Delta-G solvation = -19840.940016 eV Core-core repulsion = 16940.991276 eV Total energy + Delta-G solvation = -2899.948740 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.94425 -39.91334 -37.07867 -35.73388 -33.40877 -32.33909 -31.71886 -30.82919 -27.63698 -26.75838 -25.04514 -23.38387 -23.05080 -21.60721 -20.66875 -18.74046 -18.05042 -17.36939 -16.41572 -16.21446 -16.12397 -15.77265 -15.53725 -15.01711 -14.63512 -14.41945 -14.15000 -13.92923 -13.59118 -13.52858 -13.24797 -13.05063 -12.90434 -12.79558 -12.53745 -12.33279 -12.03650 -11.95107 -11.85258 -11.72772 -11.68327 -11.52344 -10.82690 -10.18607 -9.72814 -9.67833 -9.50068 -8.19007 -5.84278 0.52219 0.57765 1.44090 1.50251 1.59907 2.06539 2.32038 2.88822 3.10078 3.18962 3.92377 3.97279 4.15843 4.24353 4.26388 4.32811 4.39891 4.51774 4.65168 4.70848 4.77163 4.85735 4.90816 4.93602 4.98490 5.01721 5.11955 5.22127 5.22912 5.30238 5.33253 5.46269 5.58942 5.66129 5.68881 5.81113 5.84929 5.90900 6.20750 6.54563 7.17302 7.65953 8.06264 8.77221 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.021089 B = 0.005957 C = 0.005160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1327.409241 B = 4699.143370 C = 5425.482809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.134 3.866 3 N -0.451 5.451 4 C -0.353 4.353 5 H 0.120 0.880 6 C -0.009 4.009 7 N -0.886 5.886 8 Si 0.987 3.013 9 H -0.276 1.276 10 H -0.285 1.285 11 H -0.260 1.260 12 C 0.444 3.556 13 O -0.644 6.644 14 C -0.075 4.075 15 H 0.079 0.921 16 C -0.138 4.138 17 C -0.049 4.049 18 C -0.084 4.084 19 C -0.135 4.135 20 C -0.123 4.123 21 C -0.130 4.130 22 C -0.122 4.122 23 C -0.124 4.124 24 H 0.065 0.935 25 H 0.054 0.946 26 H 0.011 0.989 27 H 0.091 0.909 28 H 0.023 0.977 29 H 0.268 0.732 30 H 0.052 0.948 31 H 0.066 0.934 32 H 0.076 0.924 33 H 0.066 0.934 34 H 0.054 0.946 35 H 0.116 0.884 36 H 0.140 0.860 37 H 0.146 0.854 38 H 0.145 0.855 39 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.489 12.729 3.353 13.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.011 3.989 3 N -0.167 5.167 4 C -0.480 4.480 5 H 0.138 0.862 6 C -0.210 4.210 7 N -0.525 5.525 8 Si 0.811 3.189 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.184 1.184 12 C 0.234 3.766 13 O -0.534 6.534 14 C -0.096 4.096 15 H 0.097 0.903 16 C -0.196 4.196 17 C -0.087 4.087 18 C -0.084 4.084 19 C -0.153 4.153 20 C -0.141 4.141 21 C -0.148 4.148 22 C -0.140 4.140 23 C -0.142 4.142 24 H 0.084 0.916 25 H 0.073 0.927 26 H 0.030 0.970 27 H 0.109 0.891 28 H 0.041 0.959 29 H 0.078 0.922 30 H 0.071 0.929 31 H 0.084 0.916 32 H 0.095 0.905 33 H 0.085 0.915 34 H 0.073 0.927 35 H 0.134 0.866 36 H 0.158 0.842 37 H 0.164 0.836 38 H 0.162 0.838 39 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 4.278 12.301 3.673 13.532 hybrid contribution -0.156 -0.462 -0.797 0.934 sum 4.122 11.839 2.876 12.862 Atomic orbital electron populations 1.21741 0.96148 1.00888 0.98802 1.21167 0.94902 0.83747 0.99125 1.44041 1.55179 1.11390 1.06127 1.20383 1.33757 1.10965 0.82853 0.86247 1.26116 0.95678 0.97003 1.02239 1.70243 1.28153 1.26745 1.27398 0.85008 0.77707 0.79144 0.77055 1.20164 1.21087 1.18352 1.20858 0.82566 0.89990 0.83203 1.90468 1.59043 1.71653 1.32257 1.20843 0.99363 0.91565 0.97840 0.90261 1.21868 0.93000 1.02675 1.02022 1.20238 1.01604 0.91251 0.95626 1.19897 0.94620 0.94447 0.99479 1.21231 0.98977 0.94159 1.00921 1.21394 0.98174 0.94856 0.99687 1.21472 0.92748 1.00882 0.99685 1.21442 1.00369 0.92683 0.99470 1.21238 0.95931 0.96503 1.00557 0.91636 0.92723 0.97008 0.89142 0.95867 0.92166 0.92898 0.91560 0.90470 0.91536 0.92713 0.86551 0.84220 0.83598 0.83752 0.85589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.69 9.49 71.98 0.68 -5.01 16 2 C 0.13 6.85 5.28 86.38 0.46 7.31 16 3 N -0.45 -23.23 2.64 -635.54 -1.68 -24.90 16 4 C -0.35 -17.46 8.47 84.04 0.71 -16.74 16 5 H 0.12 5.50 4.57 -2.91 -0.01 5.48 16 6 C -0.01 -0.43 5.12 84.93 0.44 0.01 16 7 N -0.89 -44.68 8.17 21.66 0.18 -44.51 16 8 Si 0.99 38.52 29.57 68.60 2.03 40.55 16 9 H -0.28 -10.66 7.11 99.48 0.71 -9.95 16 10 H -0.29 -11.14 7.11 99.48 0.71 -10.44 16 11 H -0.26 -9.64 7.11 99.48 0.71 -8.93 16 12 C 0.44 22.13 6.88 87.65 0.60 22.74 16 13 O -0.64 -35.53 15.70 -3.07 -0.05 -35.58 16 14 C -0.07 -3.01 1.89 -11.54 -0.02 -3.03 16 15 H 0.08 3.27 7.76 -2.39 -0.02 3.25 16 16 C -0.14 -4.83 8.17 71.98 0.59 -4.24 16 17 C -0.05 -1.77 4.14 29.85 0.12 -1.65 16 18 C -0.08 -2.52 4.72 -19.87 -0.09 -2.61 16 19 C -0.13 -3.72 9.70 22.27 0.22 -3.51 16 20 C -0.12 -2.75 10.05 22.27 0.22 -2.53 16 21 C -0.13 -2.57 10.05 22.27 0.22 -2.35 16 22 C -0.12 -2.54 10.05 22.27 0.22 -2.32 16 23 C -0.12 -3.18 8.12 22.27 0.18 -3.00 16 24 H 0.06 3.39 6.47 -2.39 -0.02 3.37 16 25 H 0.05 2.35 8.14 -2.39 -0.02 2.33 16 26 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16 27 H 0.09 4.76 5.88 -2.39 -0.01 4.75 16 28 H 0.02 1.20 7.55 -2.39 -0.02 1.18 16 29 H 0.27 12.84 8.31 -92.71 -0.77 12.07 16 30 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 31 H 0.07 2.49 5.36 -2.39 -0.01 2.48 16 32 H 0.08 2.31 6.66 -2.39 -0.02 2.29 16 33 H 0.07 2.45 8.06 -2.39 -0.02 2.43 16 34 H 0.05 2.11 8.05 -2.39 -0.02 2.09 16 35 H 0.12 3.19 8.06 -2.91 -0.02 3.17 16 36 H 0.14 2.41 8.06 -2.91 -0.02 2.39 16 37 H 0.15 1.99 8.06 -2.91 -0.02 1.96 16 38 H 0.14 2.19 8.06 -2.91 -0.02 2.17 16 39 H 0.13 3.00 8.04 -2.91 -0.02 2.98 16 Total: -1.00 -60.08 312.90 6.06 -54.02 By element: Atomic # 1 Polarization: 26.33 SS G_CDS: 1.03 Total: 27.35 kcal Atomic # 6 Polarization: -21.48 SS G_CDS: 4.55 Total: -16.93 kcal Atomic # 7 Polarization: -67.91 SS G_CDS: -1.50 Total: -69.41 kcal Atomic # 8 Polarization: -35.53 SS G_CDS: -0.05 Total: -35.58 kcal Atomic # 14 Polarization: 38.52 SS G_CDS: 2.03 Total: 40.55 kcal Total: -60.08 6.06 -54.02 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000112009193.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.671 kcal (2) G-P(sol) polarization free energy of solvation -60.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds