Wall clock time and date at job start Mon Mar 30 2020 06:19:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09004 * 109.46914 * 2 1 4 4 C 1.52997 * 109.47642 * 239.99464 * 2 1 3 5 5 C 1.50702 * 109.46807 * 65.00283 * 4 2 1 6 6 C 1.38245 * 119.99735 * 269.72862 * 5 4 2 7 7 C 1.38232 * 120.00104 * 179.76462 * 6 5 4 8 8 C 1.38240 * 119.99590 * 0.50960 * 7 6 5 9 9 C 1.38231 * 120.00505 * 359.74016 * 8 7 6 10 10 C 1.38231 * 120.00436 * 89.99937 * 5 4 2 11 11 C 1.50704 * 109.47044 * 119.99536 * 2 1 3 12 12 O 1.21277 * 119.99860 * 106.29403 * 11 2 1 13 13 N 1.34778 * 120.00227 * 286.29327 * 11 2 1 14 14 C 1.46501 * 119.99591 * 4.95379 * 13 11 2 15 15 C 1.46500 * 119.99943 * 184.68108 * 13 11 2 16 16 C 1.50693 * 109.47221 * 270.27227 * 15 13 11 17 17 H 1.08004 * 119.99907 * 0.02562 * 16 15 13 18 18 C 1.37877 * 120.00433 * 180.02562 * 16 15 13 19 19 N 1.31516 * 120.00358 * 180.02562 * 18 16 15 20 20 Si 1.86800 * 119.99717 * 0.02562 * 18 16 15 21 21 H 1.48499 * 109.46943 * 89.99808 * 20 18 16 22 22 H 1.48493 * 109.47213 * 209.99805 * 20 18 16 23 23 H 1.48503 * 109.46996 * 330.00131 * 20 18 16 24 24 H 1.09001 * 109.47600 * 289.72376 * 1 2 3 25 25 H 1.08995 * 109.47253 * 49.73011 * 1 2 3 26 26 H 1.08999 * 109.46865 * 169.72702 * 1 2 3 27 27 H 1.08995 * 109.47478 * 184.99598 * 4 2 1 28 28 H 1.08996 * 109.47467 * 305.00104 * 4 2 1 29 29 H 1.07997 * 119.99894 * 359.97438 * 6 5 4 30 30 H 1.07996 * 120.00567 * 180.22689 * 7 6 5 31 31 H 1.07998 * 119.99625 * 179.72424 * 8 7 6 32 32 H 1.07995 * 120.00425 * 179.97438 * 9 8 7 33 33 H 1.08002 * 120.00162 * 0.02562 * 10 5 4 34 34 H 1.09004 * 109.47093 * 267.70987 * 14 13 11 35 35 H 1.09004 * 109.47313 * 27.71725 * 14 13 11 36 36 H 1.09004 * 109.46796 * 147.71755 * 14 13 11 37 37 H 1.08996 * 109.47402 * 30.28068 * 15 13 11 38 38 H 1.09003 * 109.46709 * 150.27503 * 15 13 11 39 39 H 0.96999 * 119.99698 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 1.6415 0.0569 -2.4765 6 6 0.4382 -0.2090 -3.1030 7 6 0.0703 0.5081 -4.2260 8 6 0.9104 1.4841 -4.7287 9 6 2.1160 1.7465 -4.1054 10 6 2.4815 1.0329 -2.9792 11 6 2.0323 -0.7103 1.2306 12 8 2.5122 -1.8201 1.1366 13 7 1.9482 -0.1123 2.4355 14 6 1.2713 1.1804 2.5659 15 6 2.5284 -0.7578 3.6157 16 6 1.4968 -1.6476 4.2597 17 1 0.5080 -1.7250 3.8324 18 6 1.8153 -2.3630 5.3945 19 7 0.9151 -3.1400 5.9563 20 14 3.5254 -2.2286 6.1341 21 1 3.5507 -1.1227 7.1248 22 1 3.8750 -3.5049 6.8078 23 1 4.5099 -1.9514 5.0574 24 1 -0.3634 0.3468 0.9673 25 1 -0.3633 0.6642 -0.7841 26 1 -0.3633 -1.0112 -0.1833 27 1 3.1263 -0.7995 -1.2055 28 1 1.6055 -1.7199 -1.2950 29 1 -0.2159 -0.9748 -2.7131 30 1 -0.8714 0.3029 -4.7134 31 1 0.6250 2.0413 -5.6087 32 1 2.7725 2.5086 -4.4983 33 1 3.4237 1.2374 -2.4926 34 1 1.9999 1.9843 2.4607 35 1 0.5127 1.2734 1.7886 36 1 0.7977 1.2453 3.5455 37 1 3.3888 -1.3563 3.3164 38 1 2.8460 0.0044 4.3273 39 1 1.1391 -3.6430 6.7549 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000112043902.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:17 Heat of formation + Delta-G solvation = -14.716351 kcal Electronic energy + Delta-G solvation = -19316.635529 eV Core-core repulsion = 16417.061231 eV Total energy + Delta-G solvation = -2899.574298 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.84607 -38.87450 -35.04177 -34.70460 -32.51156 -31.05588 -30.83761 -28.33961 -26.73567 -25.95420 -23.70808 -22.58229 -21.94637 -20.54116 -18.28553 -17.01531 -16.87379 -16.32602 -15.52169 -15.30706 -15.04097 -14.60183 -14.15533 -13.92576 -13.44792 -13.33033 -13.04855 -12.65929 -12.45470 -12.23635 -12.15821 -12.02853 -11.76082 -11.48416 -11.16563 -11.07213 -11.01366 -10.74045 -10.66706 -10.46729 -10.08729 -9.51843 -9.02042 -8.92055 -8.67458 -8.57432 -7.66325 -6.06823 -4.05120 1.28212 1.32002 3.27839 3.36077 3.37638 3.40477 3.66779 3.93131 4.41315 4.73071 4.78490 4.90657 4.98971 5.04982 5.17315 5.23011 5.28136 5.44480 5.45458 5.56485 5.61089 5.79320 5.84881 5.88577 5.95430 5.99345 6.04675 6.16883 6.30987 6.39650 6.41965 6.42620 6.65013 6.69115 6.93866 6.98751 7.37302 7.63473 8.28977 8.49329 8.95552 9.02571 9.53687 11.06702 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.042217 B = 0.004088 C = 0.004032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 663.075670 B = 6847.771579 C = 6943.372806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.102 4.102 3 H 0.088 0.912 4 C -0.064 4.064 5 C -0.071 4.071 6 C -0.114 4.114 7 C -0.121 4.121 8 C -0.130 4.130 9 C -0.120 4.120 10 C -0.119 4.119 11 C 0.510 3.490 12 O -0.539 6.539 13 N -0.598 5.598 14 C 0.071 3.929 15 C 0.215 3.785 16 C -0.526 4.526 17 H 0.074 0.926 18 C 0.071 3.929 19 N -0.898 5.898 20 Si 0.875 3.125 21 H -0.276 1.276 22 H -0.284 1.284 23 H -0.264 1.264 24 H 0.070 0.930 25 H 0.063 0.937 26 H 0.062 0.938 27 H 0.077 0.923 28 H 0.082 0.918 29 H 0.123 0.877 30 H 0.119 0.881 31 H 0.117 0.883 32 H 0.119 0.881 33 H 0.121 0.879 34 H 0.043 0.957 35 H 0.072 0.928 36 H 0.074 0.926 37 H 0.039 0.961 38 H 0.025 0.975 39 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.049 12.159 -18.012 21.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.123 4.123 3 H 0.106 0.894 4 C -0.102 4.102 5 C -0.071 4.071 6 C -0.132 4.132 7 C -0.139 4.139 8 C -0.148 4.148 9 C -0.139 4.139 10 C -0.137 4.137 11 C 0.296 3.704 12 O -0.416 6.416 13 N -0.329 5.329 14 C -0.073 4.073 15 C 0.095 3.905 16 C -0.565 4.565 17 H 0.092 0.908 18 C -0.131 4.131 19 N -0.537 5.537 20 Si 0.702 3.298 21 H -0.201 1.201 22 H -0.210 1.210 23 H -0.189 1.189 24 H 0.089 0.911 25 H 0.082 0.918 26 H 0.081 0.919 27 H 0.095 0.905 28 H 0.101 0.899 29 H 0.141 0.859 30 H 0.137 0.863 31 H 0.135 0.865 32 H 0.137 0.863 33 H 0.139 0.861 34 H 0.062 0.938 35 H 0.090 0.910 36 H 0.093 0.907 37 H 0.057 0.943 38 H 0.043 0.957 39 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 0.190 11.442 -17.872 21.222 hybrid contribution 0.720 0.094 0.601 0.943 sum 0.910 11.535 -17.271 20.789 Atomic orbital electron populations 1.21975 0.93161 1.02876 1.02635 1.21235 0.97684 1.00287 0.93112 0.89390 1.20450 1.01894 0.98416 0.89398 1.19990 0.94385 0.96272 0.96434 1.21145 0.96347 0.99981 0.95740 1.21141 0.99600 0.96478 0.96639 1.21102 0.94919 0.98619 1.00205 1.21118 0.96830 0.99766 0.96139 1.21104 0.99763 0.96196 0.96595 1.20333 0.79545 0.86194 0.84313 1.90665 1.45789 1.19065 1.86079 1.47812 1.55952 1.20668 1.08489 1.21933 0.96856 0.84931 1.03535 1.19651 0.95290 0.93071 0.82519 1.21333 0.99455 1.25509 1.10170 0.90790 1.24869 0.96970 0.94691 0.96585 1.69900 1.34091 1.28635 1.21075 0.86855 0.85370 0.77864 0.79694 1.20134 1.20950 1.18891 0.91129 0.91799 0.91881 0.90462 0.89897 0.85925 0.86278 0.86473 0.86337 0.86118 0.93805 0.90972 0.90727 0.94304 0.95747 0.92605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.97 8.02 37.16 0.30 -1.68 16 2 C -0.10 -1.49 1.90 -91.77 -0.17 -1.67 16 3 H 0.09 1.13 7.73 -51.93 -0.40 0.73 16 4 C -0.06 -0.89 4.14 -27.88 -0.12 -1.00 16 5 C -0.07 -0.84 4.72 -104.62 -0.49 -1.33 16 6 C -0.11 -1.25 8.27 -39.58 -0.33 -1.58 16 7 C -0.12 -1.17 10.05 -39.58 -0.40 -1.56 16 8 C -0.13 -1.20 10.05 -39.58 -0.40 -1.60 16 9 C -0.12 -1.15 10.05 -39.58 -0.40 -1.55 16 10 C -0.12 -1.28 9.70 -39.58 -0.38 -1.67 16 11 C 0.51 10.40 6.91 -10.98 -0.08 10.33 16 12 O -0.54 -13.36 15.71 5.56 0.09 -13.27 16 13 N -0.60 -12.43 2.86 -182.95 -0.52 -12.96 16 14 C 0.07 1.11 9.85 59.85 0.59 1.70 16 15 C 0.22 5.35 4.20 -5.20 -0.02 5.32 16 16 C -0.53 -15.33 9.94 -34.44 -0.34 -15.67 16 17 H 0.07 2.36 8.06 -52.48 -0.42 1.94 16 18 C 0.07 2.09 5.47 -17.82 -0.10 2.00 16 19 N -0.90 -27.99 13.96 55.43 0.77 -27.21 16 20 Si 0.88 21.75 27.47 -169.99 -4.67 17.08 16 21 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 22 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 23 H -0.26 -6.42 6.54 56.52 0.37 -6.05 16 24 H 0.07 0.96 5.50 -51.93 -0.29 0.68 16 25 H 0.06 0.71 6.98 -51.93 -0.36 0.35 16 26 H 0.06 0.88 8.09 -51.93 -0.42 0.46 16 27 H 0.08 1.11 8.08 -51.93 -0.42 0.69 16 28 H 0.08 1.24 8.01 -51.93 -0.42 0.82 16 29 H 0.12 1.25 8.05 -52.49 -0.42 0.83 16 30 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 31 H 0.12 0.82 8.06 -52.49 -0.42 0.40 16 32 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 33 H 0.12 1.18 8.06 -52.49 -0.42 0.75 16 34 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.07 0.95 4.19 -51.93 -0.22 0.73 16 36 H 0.07 1.21 8.09 -51.93 -0.42 0.79 16 37 H 0.04 1.04 6.56 -51.93 -0.34 0.70 16 38 H 0.02 0.57 7.50 -51.93 -0.39 0.18 16 39 H 0.26 7.67 8.31 -40.82 -0.34 7.34 16 LS Contribution 319.51 15.07 4.81 4.81 Total: -1.00 -34.18 319.51 -7.65 -41.84 By element: Atomic # 1 Polarization: 5.46 SS G_CDS: -5.80 Total: -0.34 kcal Atomic # 6 Polarization: -7.61 SS G_CDS: -2.34 Total: -9.95 kcal Atomic # 7 Polarization: -40.42 SS G_CDS: 0.25 Total: -40.17 kcal Atomic # 8 Polarization: -13.36 SS G_CDS: 0.09 Total: -13.27 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -4.67 Total: 17.08 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -34.18 -7.65 -41.84 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000112043902.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.120 kcal (2) G-P(sol) polarization free energy of solvation -34.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds