Wall clock time and date at job start Mon Mar 30 2020 06:17:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50709 * 119.99689 * 2 1 4 4 C 1.50697 * 120.00305 * 179.97438 * 2 1 3 5 5 N 1.46904 * 109.47212 * 95.00612 * 4 2 1 6 6 C 1.46892 * 111.00131 * 180.02562 * 5 4 2 7 7 H 1.09008 * 109.47114 * 324.99774 * 6 5 4 8 8 C 1.52997 * 109.47295 * 84.99918 * 6 5 4 9 9 C 1.50696 * 109.47167 * 204.99735 * 6 5 4 10 10 C 1.38300 * 119.93262 * 319.72911 * 9 6 5 11 11 C 1.38104 * 120.07247 * 179.72590 * 10 9 6 12 12 C 1.38880 * 119.92810 * 0.54158 * 11 10 9 13 13 O 1.35747 * 120.07174 * 179.75066 * 12 11 10 14 14 C 1.34825 * 117.00597 * 174.44425 * 13 12 11 15 15 H 1.08005 * 119.99735 * 5.05211 * 14 13 12 16 16 C 1.38651 * 120.00550 * 185.05478 * 14 13 12 17 17 N 1.31549 * 120.00140 * 179.97438 * 16 14 13 18 18 Si 1.86801 * 119.99721 * 0.02562 * 16 14 13 19 19 H 1.48492 * 109.47541 * 89.99511 * 18 16 14 20 20 H 1.48499 * 109.47053 * 210.00090 * 18 16 14 21 21 H 1.48503 * 109.47039 * 329.99530 * 18 16 14 22 22 C 1.38882 * 119.86199 * 359.72799 * 12 11 10 23 23 C 1.38098 * 119.93192 * 0.02562 * 22 12 11 24 24 H 1.08006 * 119.99545 * 179.97438 * 1 2 3 25 25 H 1.07997 * 120.00365 * 0.02562 * 1 2 3 26 26 H 1.08995 * 109.46790 * 269.99320 * 3 2 1 27 27 H 1.09001 * 109.47064 * 29.99301 * 3 2 1 28 28 H 1.09002 * 109.47125 * 150.00004 * 3 2 1 29 29 H 1.08995 * 109.47373 * 335.00316 * 4 2 1 30 30 H 1.09004 * 109.46922 * 215.00164 * 4 2 1 31 31 H 1.00903 * 110.99438 * 303.95835 * 5 4 2 32 32 H 1.08999 * 109.46827 * 299.99503 * 8 6 5 33 33 H 1.08994 * 109.47650 * 59.99661 * 8 6 5 34 34 H 1.09004 * 109.47560 * 180.02562 * 8 6 5 35 35 H 1.08005 * 119.96345 * 359.97438 * 10 9 6 36 36 H 1.08000 * 120.03674 * 180.27353 * 11 10 9 37 37 H 0.97001 * 120.00064 * 180.02562 * 17 16 14 38 38 H 1.07994 * 120.03671 * 179.97438 * 22 12 11 39 39 H 1.08000 * 119.97139 * 180.02562 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 6 2.0635 -1.3050 0.0006 5 7 2.4130 -1.6693 -1.3790 6 6 3.1497 -2.9395 -1.4175 7 1 3.7882 -3.0162 -0.5373 8 6 2.1577 -4.1043 -1.4310 9 6 4.0000 -2.9896 -2.6607 10 6 3.4999 -2.5123 -3.8585 11 6 4.2786 -2.5516 -4.9983 12 6 5.5612 -3.0814 -4.9433 13 8 6.3274 -3.1261 -6.0630 14 6 7.6005 -3.5451 -5.9174 15 1 7.9446 -3.9038 -4.9585 16 6 8.4682 -3.5156 -6.9985 17 7 9.7105 -3.9241 -6.8561 18 14 7.8733 -2.8946 -8.6567 19 1 8.1040 -1.4306 -8.7489 20 1 8.6204 -3.5827 -9.7401 21 1 6.4223 -3.1769 -8.7996 22 6 6.0586 -3.5650 -3.7402 23 6 5.2768 -3.5183 -2.6028 24 1 -0.5400 -0.9354 -0.0004 25 1 -0.5400 0.9352 -0.0004 26 1 2.2451 1.6198 -1.0276 27 1 1.4742 2.0649 0.5137 28 1 3.0159 1.1749 0.5138 29 1 1.4387 -2.0852 0.4352 30 1 2.9742 -1.1984 0.5900 31 1 1.5901 -1.7110 -1.9614 32 1 1.5428 -4.0681 -0.5317 33 1 1.5193 -4.0277 -2.3110 34 1 2.7044 -5.0469 -1.4591 35 1 2.5006 -2.1048 -3.9017 36 1 3.8891 -2.1747 -5.9325 37 1 10.3176 -3.9031 -7.6124 38 1 7.0554 -3.9780 -3.6942 39 1 5.6630 -3.8938 -1.6667 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000121020751.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:17:04 Heat of formation + Delta-G solvation = 10.011622 kcal Electronic energy + Delta-G solvation = -18764.347303 eV Core-core repulsion = 15865.845290 eV Total energy + Delta-G solvation = -2898.502013 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.32175 -37.98895 -36.50618 -34.53085 -32.34052 -30.50010 -30.08132 -28.06173 -27.39005 -25.41183 -25.05701 -22.47853 -21.91225 -20.03221 -18.68603 -17.78979 -17.23475 -16.01849 -15.27654 -15.04245 -14.59989 -14.31186 -14.04807 -13.76261 -13.73178 -13.53847 -13.26766 -12.92375 -12.65769 -12.45545 -12.24438 -12.13686 -11.94795 -11.66702 -11.53457 -11.20133 -11.12122 -10.69101 -10.56323 -10.52324 -10.11095 -9.35593 -9.32912 -8.82942 -8.37276 -8.18414 -7.24040 -6.38533 -4.04938 1.98759 2.19559 2.29175 3.24111 3.27983 3.42642 4.25946 4.26652 4.55943 4.70781 4.74470 4.90468 5.04631 5.14910 5.25859 5.29072 5.38804 5.47331 5.54300 5.59788 5.63924 5.72346 5.73980 5.83966 5.88271 5.93127 6.12155 6.19264 6.38754 6.40339 6.61807 6.65454 6.80938 6.96083 7.15534 7.33255 7.38310 7.39870 7.66393 7.84057 8.07867 8.97203 9.60758 10.69370 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.032937 B = 0.003762 C = 0.003634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 849.898889 B = 7442.032975 C = 7704.103518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.111 4.111 3 C -0.114 4.114 4 C 0.090 3.910 5 N -0.674 5.674 6 C 0.138 3.862 7 H 0.077 0.923 8 C -0.176 4.176 9 C -0.158 4.158 10 C -0.056 4.056 11 C -0.194 4.194 12 C 0.158 3.842 13 O -0.220 6.220 14 C -0.389 4.389 15 H 0.106 0.894 16 C 0.063 3.937 17 N -0.882 5.882 18 Si 0.905 3.095 19 H -0.273 1.273 20 H -0.283 1.283 21 H -0.260 1.260 22 C -0.220 4.220 23 C -0.070 4.070 24 H 0.093 0.907 25 H 0.097 0.903 26 H 0.072 0.928 27 H 0.057 0.943 28 H 0.063 0.937 29 H 0.033 0.967 30 H 0.077 0.923 31 H 0.339 0.661 32 H 0.047 0.953 33 H 0.057 0.943 34 H 0.064 0.936 35 H 0.110 0.890 36 H 0.115 0.885 37 H 0.279 0.721 38 H 0.132 0.868 39 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.951 4.558 12.323 20.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.111 4.111 3 C -0.171 4.171 4 C -0.038 4.038 5 N -0.304 5.304 6 C 0.029 3.971 7 H 0.095 0.905 8 C -0.235 4.235 9 C -0.159 4.159 10 C -0.074 4.074 11 C -0.213 4.213 12 C 0.107 3.893 13 O -0.125 6.125 14 C -0.464 4.464 15 H 0.123 0.877 16 C -0.140 4.140 17 N -0.520 5.520 18 Si 0.731 3.269 19 H -0.199 1.199 20 H -0.208 1.208 21 H -0.184 1.184 22 C -0.239 4.239 23 C -0.088 4.088 24 H 0.112 0.888 25 H 0.116 0.884 26 H 0.091 0.909 27 H 0.076 0.924 28 H 0.082 0.918 29 H 0.051 0.949 30 H 0.095 0.905 31 H 0.158 0.842 32 H 0.066 0.934 33 H 0.076 0.924 34 H 0.083 0.917 35 H 0.128 0.872 36 H 0.133 0.867 37 H 0.089 0.911 38 H 0.149 0.851 39 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -15.190 4.958 11.972 19.966 hybrid contribution -0.684 -0.487 -0.479 0.967 sum -15.874 4.472 11.493 20.101 Atomic orbital electron populations 1.23679 0.95271 1.01700 1.03238 1.21751 0.95015 0.96017 0.98361 1.20806 0.99856 0.93879 1.02574 1.21052 0.98766 0.92975 0.91036 1.60625 1.28154 1.32826 1.08796 1.20233 0.93778 0.86540 0.96533 0.90487 1.22494 0.99763 1.00179 1.01066 1.19130 0.95431 1.07298 0.94031 1.20312 0.98204 0.97485 0.91406 1.20203 0.93736 1.08291 0.99071 1.19123 0.90856 0.93063 0.86293 1.83569 1.23908 1.75986 1.29048 1.20763 0.82771 1.42534 1.00355 0.87688 1.24456 0.94136 0.96218 0.99216 1.69645 1.04060 1.45588 1.32715 0.86183 0.79888 0.79151 0.81687 1.19897 1.20845 1.18386 1.21222 1.02002 1.07958 0.92725 1.20597 0.93084 0.97931 0.97231 0.88838 0.88447 0.90900 0.92407 0.91831 0.94909 0.90489 0.84217 0.93373 0.92359 0.91735 0.87229 0.86736 0.91113 0.85066 0.87520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.71 13.89 29.02 0.40 -1.30 16 2 C -0.11 -1.06 5.56 -101.06 -0.56 -1.62 16 3 C -0.11 -1.04 10.03 36.01 0.36 -0.68 16 4 C 0.09 0.91 5.64 -4.97 -0.03 0.88 16 5 N -0.67 -7.94 5.70 -109.22 -0.62 -8.56 16 6 C 0.14 1.76 2.78 -68.87 -0.19 1.57 16 7 H 0.08 0.96 7.66 -51.92 -0.40 0.56 16 8 C -0.18 -1.95 9.14 37.16 0.34 -1.61 16 9 C -0.16 -2.58 4.96 -104.57 -0.52 -3.10 16 10 C -0.06 -0.95 9.31 -39.61 -0.37 -1.32 16 11 C -0.19 -3.90 9.99 -39.39 -0.39 -4.29 16 12 C 0.16 3.71 6.65 -39.11 -0.26 3.45 16 13 O -0.22 -5.89 8.58 0.07 0.00 -5.89 16 14 C -0.39 -11.09 9.95 30.89 0.31 -10.78 16 15 H 0.11 3.06 5.44 -52.48 -0.29 2.77 16 16 C 0.06 1.78 5.49 -17.52 -0.10 1.68 16 17 N -0.88 -25.73 13.96 55.48 0.77 -24.96 16 18 Si 0.91 21.93 28.62 -169.99 -4.86 17.06 16 19 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 20 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 21 H -0.26 -6.31 7.11 56.52 0.40 -5.91 16 22 C -0.22 -4.79 9.17 -39.39 -0.36 -5.15 16 23 C -0.07 -1.26 9.66 -39.61 -0.38 -1.65 16 24 H 0.09 0.74 7.99 -52.48 -0.42 0.32 16 25 H 0.10 0.74 8.04 -52.49 -0.42 0.32 16 26 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.06 0.44 8.06 -51.93 -0.42 0.03 16 28 H 0.06 0.58 8.08 -51.93 -0.42 0.16 16 29 H 0.03 0.31 7.28 -51.93 -0.38 -0.07 16 30 H 0.08 0.79 8.01 -51.93 -0.42 0.38 16 31 H 0.34 3.77 7.81 -39.29 -0.31 3.46 16 32 H 0.05 0.46 7.45 -51.93 -0.39 0.07 16 33 H 0.06 0.64 8.13 -51.93 -0.42 0.22 16 34 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 35 H 0.11 1.59 7.25 -52.48 -0.38 1.21 16 36 H 0.11 2.17 8.06 -52.49 -0.42 1.74 16 37 H 0.28 7.51 8.31 -40.82 -0.34 7.17 16 38 H 0.13 3.01 5.64 -52.49 -0.30 2.71 16 39 H 0.11 1.66 8.03 -52.49 -0.42 1.24 16 LS Contribution 327.93 15.07 4.94 4.94 Total: -1.00 -29.33 327.93 -7.30 -36.62 By element: Atomic # 1 Polarization: 10.47 SS G_CDS: -5.77 Total: 4.69 kcal Atomic # 6 Polarization: -22.16 SS G_CDS: -1.75 Total: -23.91 kcal Atomic # 7 Polarization: -33.67 SS G_CDS: 0.15 Total: -33.52 kcal Atomic # 8 Polarization: -5.89 SS G_CDS: 0.00 Total: -5.89 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -4.86 Total: 17.06 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -29.33 -7.30 -36.62 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121020751.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.635 kcal (2) G-P(sol) polarization free energy of solvation -29.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.623 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds