Wall clock time and date at job start Mon Mar 30 2020 06:17:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50709 * 119.99689 * 2 1 4 4 C 1.50697 * 120.00305 * 179.97438 * 2 1 3 5 5 N 1.46904 * 109.47212 * 95.00612 * 4 2 1 6 6 C 1.46892 * 111.00131 * 180.02562 * 5 4 2 7 7 H 1.09008 * 109.47114 * 324.99774 * 6 5 4 8 8 C 1.52997 * 109.47295 * 84.99918 * 6 5 4 9 9 C 1.50696 * 109.47167 * 204.99735 * 6 5 4 10 10 C 1.38300 * 119.93262 * 319.72911 * 9 6 5 11 11 C 1.38104 * 120.07247 * 179.72590 * 10 9 6 12 12 C 1.38880 * 119.92810 * 0.54158 * 11 10 9 13 13 O 1.35747 * 120.07174 * 179.75066 * 12 11 10 14 14 C 1.34825 * 117.00597 * 174.44425 * 13 12 11 15 15 H 1.08005 * 119.99735 * 5.05211 * 14 13 12 16 16 C 1.38651 * 120.00550 * 185.05478 * 14 13 12 17 17 N 1.31549 * 120.00140 * 179.97438 * 16 14 13 18 18 Si 1.86801 * 119.99721 * 0.02562 * 16 14 13 19 19 H 1.48492 * 109.47541 * 89.99511 * 18 16 14 20 20 H 1.48499 * 109.47053 * 210.00090 * 18 16 14 21 21 H 1.48503 * 109.47039 * 329.99530 * 18 16 14 22 22 C 1.38882 * 119.86199 * 359.72799 * 12 11 10 23 23 C 1.38098 * 119.93192 * 0.02562 * 22 12 11 24 24 H 1.08006 * 119.99545 * 179.97438 * 1 2 3 25 25 H 1.07997 * 120.00365 * 0.02562 * 1 2 3 26 26 H 1.08995 * 109.46790 * 269.99320 * 3 2 1 27 27 H 1.09001 * 109.47064 * 29.99301 * 3 2 1 28 28 H 1.09002 * 109.47125 * 150.00004 * 3 2 1 29 29 H 1.08995 * 109.47373 * 335.00316 * 4 2 1 30 30 H 1.09004 * 109.46922 * 215.00164 * 4 2 1 31 31 H 1.00903 * 110.99438 * 303.95835 * 5 4 2 32 32 H 1.08999 * 109.46827 * 299.99503 * 8 6 5 33 33 H 1.08994 * 109.47650 * 59.99661 * 8 6 5 34 34 H 1.09004 * 109.47560 * 180.02562 * 8 6 5 35 35 H 1.08005 * 119.96345 * 359.97438 * 10 9 6 36 36 H 1.08000 * 120.03674 * 180.27353 * 11 10 9 37 37 H 0.97001 * 120.00064 * 180.02562 * 17 16 14 38 38 H 1.07994 * 120.03671 * 179.97438 * 22 12 11 39 39 H 1.08000 * 119.97139 * 180.02562 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 6 2.0635 -1.3050 0.0006 5 7 2.4130 -1.6693 -1.3790 6 6 3.1497 -2.9395 -1.4175 7 1 3.7882 -3.0162 -0.5373 8 6 2.1577 -4.1043 -1.4310 9 6 4.0000 -2.9896 -2.6607 10 6 3.4999 -2.5123 -3.8585 11 6 4.2786 -2.5516 -4.9983 12 6 5.5612 -3.0814 -4.9433 13 8 6.3274 -3.1261 -6.0630 14 6 7.6005 -3.5451 -5.9174 15 1 7.9446 -3.9038 -4.9585 16 6 8.4682 -3.5156 -6.9985 17 7 9.7105 -3.9241 -6.8561 18 14 7.8733 -2.8946 -8.6567 19 1 8.1040 -1.4306 -8.7489 20 1 8.6204 -3.5827 -9.7401 21 1 6.4223 -3.1769 -8.7996 22 6 6.0586 -3.5650 -3.7402 23 6 5.2768 -3.5183 -2.6028 24 1 -0.5400 -0.9354 -0.0004 25 1 -0.5400 0.9352 -0.0004 26 1 2.2451 1.6198 -1.0276 27 1 1.4742 2.0649 0.5137 28 1 3.0159 1.1749 0.5138 29 1 1.4387 -2.0852 0.4352 30 1 2.9742 -1.1984 0.5900 31 1 1.5901 -1.7110 -1.9614 32 1 1.5428 -4.0681 -0.5317 33 1 1.5193 -4.0277 -2.3110 34 1 2.7044 -5.0469 -1.4591 35 1 2.5006 -2.1048 -3.9017 36 1 3.8891 -2.1747 -5.9325 37 1 10.3176 -3.9031 -7.6124 38 1 7.0554 -3.9780 -3.6942 39 1 5.6630 -3.8938 -1.6667 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000121020751.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:17:03 Heat of formation + Delta-G solvation = -7.292176 kcal Electronic energy + Delta-G solvation = -18765.097652 eV Core-core repulsion = 15865.845290 eV Total energy + Delta-G solvation = -2899.252362 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.94004 -39.28960 -37.74392 -35.56642 -34.40299 -31.89951 -31.38730 -29.38762 -28.06433 -27.24631 -26.02096 -23.89692 -23.41477 -21.44080 -19.70249 -19.47281 -19.03387 -17.04099 -16.73035 -16.12136 -16.04248 -15.65696 -15.45696 -15.33499 -15.03981 -14.65846 -14.34776 -14.22136 -14.07952 -13.85408 -13.81145 -13.37027 -13.01646 -12.70654 -12.63952 -12.50335 -12.32394 -12.17122 -12.06735 -11.86930 -11.59396 -11.24244 -10.88350 -10.02690 -9.75953 -9.26609 -8.91426 -8.49254 -6.21465 0.61139 0.69365 1.31310 1.32734 1.36098 1.52261 2.28817 2.77652 3.06542 3.18860 3.44189 3.94789 3.97235 4.08496 4.10678 4.18973 4.37839 4.38894 4.61895 4.63345 4.71128 4.74709 4.81122 4.88079 4.93716 4.96415 5.02054 5.10033 5.20382 5.26286 5.28569 5.43901 5.59009 5.72908 5.77680 5.83041 5.93710 5.97476 6.18416 6.29666 6.53660 6.85461 7.61339 8.62652 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.032937 B = 0.003762 C = 0.003634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 849.898889 B = 7442.032975 C = 7704.103518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.130 4.130 3 C -0.114 4.114 4 C 0.094 3.906 5 N -0.684 5.684 6 C 0.142 3.858 7 H 0.084 0.916 8 C -0.171 4.171 9 C -0.132 4.132 10 C -0.049 4.049 11 C -0.194 4.194 12 C 0.116 3.884 13 O -0.248 6.248 14 C -0.399 4.399 15 H 0.080 0.920 16 C 0.009 3.991 17 N -0.925 5.925 18 Si 0.971 3.029 19 H -0.266 1.266 20 H -0.267 1.267 21 H -0.263 1.263 22 C -0.236 4.236 23 C -0.073 4.073 24 H 0.102 0.898 25 H 0.106 0.894 26 H 0.061 0.939 27 H 0.069 0.931 28 H 0.058 0.942 29 H 0.046 0.954 30 H 0.072 0.928 31 H 0.345 0.655 32 H 0.069 0.931 33 H 0.060 0.940 34 H 0.058 0.942 35 H 0.146 0.854 36 H 0.125 0.875 37 H 0.284 0.716 38 H 0.106 0.894 39 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.281 5.393 13.532 24.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.130 4.130 3 C -0.171 4.171 4 C -0.034 4.034 5 N -0.315 5.315 6 C 0.032 3.968 7 H 0.102 0.898 8 C -0.229 4.229 9 C -0.133 4.133 10 C -0.067 4.067 11 C -0.213 4.213 12 C 0.067 3.933 13 O -0.156 6.156 14 C -0.475 4.475 15 H 0.097 0.903 16 C -0.189 4.189 17 N -0.566 5.566 18 Si 0.794 3.206 19 H -0.191 1.191 20 H -0.191 1.191 21 H -0.187 1.187 22 C -0.255 4.255 23 C -0.092 4.092 24 H 0.121 0.879 25 H 0.124 0.876 26 H 0.080 0.920 27 H 0.088 0.912 28 H 0.077 0.923 29 H 0.064 0.936 30 H 0.090 0.910 31 H 0.165 0.835 32 H 0.088 0.912 33 H 0.079 0.921 34 H 0.078 0.922 35 H 0.164 0.836 36 H 0.143 0.857 37 H 0.094 0.906 38 H 0.124 0.876 39 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -18.557 5.799 13.220 23.511 hybrid contribution 0.090 -0.707 -0.534 0.890 sum -18.467 5.092 12.686 22.976 Atomic orbital electron populations 1.23855 0.94948 1.02603 1.01244 1.21759 0.95430 0.95743 1.00065 1.20797 0.99965 0.94353 1.01983 1.21034 0.98928 0.93653 0.89810 1.60520 1.28724 1.31985 1.10254 1.20190 0.94060 0.88080 0.94436 0.89757 1.22421 0.99364 0.98786 1.02362 1.19681 0.94702 1.03339 0.95612 1.20723 0.99252 0.96364 0.90388 1.20521 0.92547 1.07396 1.00803 1.19660 0.92066 0.95320 0.86258 1.83508 1.23177 1.78213 1.30655 1.20709 0.84154 1.42900 0.99761 0.90288 1.25280 0.94222 0.96583 1.02826 1.69729 1.05216 1.47619 1.34079 0.85208 0.79071 0.78922 0.77449 1.19103 1.19128 1.18739 1.21232 1.01667 1.08697 0.93937 1.20896 0.93572 0.97744 0.96949 0.87931 0.87598 0.91982 0.91209 0.92296 0.93588 0.90972 0.83526 0.91189 0.92087 0.92240 0.83638 0.85673 0.90601 0.87624 0.84877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.52 13.89 67.79 0.94 -1.58 16 2 C -0.13 -2.06 5.56 -16.48 -0.09 -2.15 16 3 C -0.11 -1.83 10.03 71.24 0.71 -1.12 16 4 C 0.09 1.56 5.64 85.56 0.48 2.05 16 5 N -0.68 -13.48 5.70 -499.48 -2.85 -16.32 16 6 C 0.14 3.07 2.78 44.17 0.12 3.19 16 7 H 0.08 1.77 7.66 -2.38 -0.02 1.76 16 8 C -0.17 -3.04 9.14 71.98 0.66 -2.38 16 9 C -0.13 -3.97 4.96 -19.83 -0.10 -4.07 16 10 C -0.05 -1.54 9.31 22.25 0.21 -1.33 16 11 C -0.19 -7.61 9.99 22.39 0.22 -7.39 16 12 C 0.12 5.56 6.65 22.58 0.15 5.71 16 13 O -0.25 -13.83 8.58 -22.65 -0.19 -14.02 16 14 C -0.40 -24.08 9.95 67.92 0.68 -23.41 16 15 H 0.08 5.00 5.44 -2.91 -0.02 4.98 16 16 C 0.01 0.53 5.49 84.83 0.47 0.99 16 17 N -0.93 -56.26 13.96 21.61 0.30 -55.95 16 18 Si 0.97 46.32 28.62 68.60 1.96 48.28 16 19 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 20 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 21 H -0.26 -12.52 7.11 99.48 0.71 -11.81 16 22 C -0.24 -10.65 9.17 22.39 0.21 -10.45 16 23 C -0.07 -2.57 9.66 22.25 0.21 -2.36 16 24 H 0.10 1.19 7.99 -2.91 -0.02 1.17 16 25 H 0.11 1.24 8.04 -2.91 -0.02 1.21 16 26 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 27 H 0.07 0.92 8.06 -2.39 -0.02 0.90 16 28 H 0.06 0.97 8.08 -2.39 -0.02 0.95 16 29 H 0.05 0.66 7.28 -2.39 -0.02 0.64 16 30 H 0.07 1.27 8.01 -2.39 -0.02 1.25 16 31 H 0.35 6.12 7.81 -89.69 -0.70 5.42 16 32 H 0.07 0.99 7.45 -2.39 -0.02 0.97 16 33 H 0.06 1.08 8.13 -2.39 -0.02 1.06 16 34 H 0.06 1.14 8.14 -2.38 -0.02 1.12 16 35 H 0.15 3.56 7.25 -2.91 -0.02 3.54 16 36 H 0.13 4.58 8.06 -2.91 -0.02 4.56 16 37 H 0.28 15.83 8.31 -92.71 -0.77 15.05 16 38 H 0.11 5.25 5.64 -2.91 -0.02 5.23 16 39 H 0.13 3.92 8.03 -2.91 -0.02 3.90 16 Total: -1.00 -66.37 327.93 4.43 -61.94 By element: Atomic # 1 Polarization: 20.04 SS G_CDS: 0.33 Total: 20.37 kcal Atomic # 6 Polarization: -49.17 SS G_CDS: 4.87 Total: -44.30 kcal Atomic # 7 Polarization: -69.73 SS G_CDS: -2.54 Total: -72.28 kcal Atomic # 8 Polarization: -13.83 SS G_CDS: -0.19 Total: -14.02 kcal Atomic # 14 Polarization: 46.32 SS G_CDS: 1.96 Total: 48.28 kcal Total: -66.37 4.43 -61.94 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121020751.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.650 kcal (2) G-P(sol) polarization free energy of solvation -66.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.943 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds