Wall clock time and date at job start Mon Mar 30 2020 06:55:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30903 * 1 3 3 Si 1.86802 * 119.99981 * 2 1 4 4 H 1.48496 * 109.47075 * 270.00255 * 3 2 1 5 5 H 1.48500 * 109.47052 * 30.00154 * 3 2 1 6 6 H 1.48498 * 109.46969 * 150.00413 * 3 2 1 7 7 C 1.39887 * 120.00162 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00081 * 195.34538 * 7 2 1 9 9 C 1.41037 * 119.99813 * 15.35287 * 7 2 1 10 10 C 1.40667 * 120.26597 * 25.55232 * 9 7 2 11 11 C 1.38000 * 119.76528 * 180.30392 * 10 9 7 12 12 N 1.39854 * 119.84016 * 179.72373 * 11 10 9 13 13 N 1.36600 * 120.00569 * 179.97438 * 12 11 10 14 14 C 1.46840 * 110.99935 * 244.21333 * 13 12 11 15 15 C 1.53043 * 109.52384 * 174.15859 * 14 13 12 16 16 C 1.53121 * 109.27688 * 59.17449 * 15 14 13 17 17 C 1.53122 * 109.16157 * 302.34848 * 16 15 14 18 18 C 1.46843 * 111.00090 * 119.99677 * 13 12 11 19 19 C 1.39608 * 120.32297 * 359.44134 * 11 10 9 20 20 C 1.38052 * 120.54628 * 0.56297 * 19 11 10 21 21 C 1.38733 * 120.22207 * 359.72350 * 20 19 11 22 22 N 1.38863 * 120.16610 * 180.02562 * 21 20 19 23 23 H 0.96999 * 120.00062 * 359.97438 * 1 2 3 24 24 H 1.08001 * 120.11791 * 0.02562 * 10 9 7 25 25 H 0.97001 * 119.99695 * 359.97438 * 12 11 10 26 26 H 1.09000 * 109.46216 * 294.16755 * 14 13 12 27 27 H 1.09002 * 109.46857 * 54.14010 * 14 13 12 28 28 H 1.09002 * 109.50121 * 299.23443 * 15 14 13 29 29 H 1.08996 * 109.50645 * 179.11714 * 15 14 13 30 30 H 1.08996 * 109.52169 * 182.44283 * 16 15 14 31 31 H 1.08995 * 109.52105 * 62.25637 * 16 15 14 32 32 H 1.09007 * 109.50168 * 297.71306 * 17 16 15 33 33 H 1.08996 * 109.50204 * 177.59748 * 17 16 15 34 34 H 1.08999 * 109.46335 * 305.85995 * 18 13 12 35 35 H 1.08999 * 109.46381 * 65.82805 * 18 13 12 36 36 H 1.07997 * 119.72198 * 180.28389 * 19 11 10 37 37 H 1.08004 * 119.88665 * 179.69830 * 20 19 11 38 38 H 0.97003 * 120.00085 * 179.97438 * 22 21 20 39 39 H 0.97003 * 119.99898 * 359.97229 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2430 1.6178 0.0000 4 1 2.4905 2.0464 -1.4000 5 1 1.4405 2.6527 0.7001 6 1 3.5406 1.4401 0.6999 7 6 2.0085 -1.2114 -0.0005 8 1 3.0596 -1.2282 0.2470 9 6 1.3411 -2.4109 -0.3245 10 6 0.1934 -2.3864 -1.1375 11 6 -0.4552 -3.5655 -1.4428 12 7 -1.5998 -3.5424 -2.2462 13 7 -2.2442 -4.7076 -2.5510 14 6 -2.1898 -4.9773 -3.9933 15 6 -2.7910 -6.3554 -4.2790 16 6 -4.2415 -6.3855 -3.7895 17 6 -4.2745 -6.0539 -2.2950 18 6 -3.6303 -4.6846 -2.0669 19 6 0.0289 -4.7821 -0.9584 20 6 1.1540 -4.8215 -0.1595 21 6 1.8204 -3.6491 0.1664 22 7 2.9524 -3.6901 0.9697 23 1 -0.4850 0.8400 0.0004 24 1 -0.1814 -1.4475 -1.5177 25 1 -1.9360 -2.6987 -2.5870 26 1 -2.7581 -4.2155 -4.5270 27 1 -1.1525 -4.9572 -4.3278 28 1 -2.2147 -7.1192 -3.7568 29 1 -2.7647 -6.5487 -5.3514 30 1 -4.6601 -7.3787 -3.9516 31 1 -4.8268 -5.6484 -4.3392 32 1 -3.7216 -6.8129 -1.7415 33 1 -5.3082 -6.0318 -1.9499 34 1 -3.6394 -4.4518 -1.0021 35 1 -4.1919 -3.9241 -2.6095 36 1 -0.4837 -5.6996 -1.2072 37 1 1.5165 -5.7681 0.2134 38 1 3.4167 -2.8690 1.1958 39 1 3.2788 -4.5399 1.3047 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000127503071.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:55:35 Heat of formation + Delta-G solvation = 47.740352 kcal Electronic energy + Delta-G solvation = -19594.137953 eV Core-core repulsion = 16729.564731 eV Total energy + Delta-G solvation = -2864.573221 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.154 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.04454 -37.49954 -34.96836 -33.39877 -32.45347 -30.70347 -29.41143 -29.24066 -25.98923 -24.69381 -23.00206 -22.88113 -21.11317 -19.68224 -19.62857 -17.29301 -16.71123 -15.70427 -15.25457 -15.01852 -14.86294 -14.55173 -14.50273 -13.62338 -13.37057 -13.29164 -12.57134 -12.32014 -12.15470 -11.96882 -11.76057 -11.26360 -11.14348 -11.05463 -10.98543 -10.73475 -10.52538 -10.45492 -10.30181 -9.89547 -9.78292 -9.26876 -9.01131 -8.20295 -7.76433 -7.15435 -6.55319 -5.51716 -3.99490 2.96353 3.16247 3.18823 3.38231 3.54364 3.66420 4.07511 4.79330 4.88021 4.95006 4.97095 5.30511 5.32360 5.47115 5.49340 5.66116 5.68257 5.84535 5.91283 5.97956 6.05277 6.09371 6.17563 6.28863 6.40735 6.53617 6.90812 7.19620 7.29345 7.35110 7.40627 7.51151 7.87338 8.02548 8.11647 8.25518 8.54496 8.89145 8.94983 9.04228 9.31752 9.34548 9.40332 10.43684 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.025846 B = 0.005217 C = 0.004618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1083.071484 B = 5366.085847 C = 6061.537772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.805 5.805 2 C 0.076 3.924 3 Si 0.901 3.099 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.266 1.266 7 C -0.464 4.464 8 H 0.070 0.930 9 C 0.091 3.909 10 C -0.197 4.197 11 C 0.187 3.813 12 N -0.611 5.611 13 N -0.286 5.286 14 C 0.038 3.962 15 C -0.113 4.113 16 C -0.122 4.122 17 C -0.113 4.113 18 C 0.039 3.961 19 C -0.222 4.222 20 C -0.159 4.159 21 C 0.086 3.914 22 N -0.889 5.889 23 H 0.273 0.727 24 H 0.118 0.882 25 H 0.373 0.627 26 H 0.027 0.973 27 H 0.079 0.921 28 H 0.073 0.927 29 H 0.064 0.936 30 H 0.062 0.938 31 H 0.056 0.944 32 H 0.073 0.927 33 H 0.065 0.935 34 H 0.080 0.920 35 H 0.028 0.972 36 H 0.097 0.903 37 H 0.084 0.916 38 H 0.388 0.612 39 H 0.374 0.626 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.897 -7.303 -5.455 10.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.433 5.433 2 C -0.139 4.139 3 Si 0.727 3.273 4 H -0.197 1.197 5 H -0.207 1.207 6 H -0.190 1.190 7 C -0.496 4.496 8 H 0.088 0.912 9 C 0.085 3.915 10 C -0.222 4.222 11 C 0.091 3.909 12 N -0.340 5.340 13 N -0.102 5.102 14 C -0.090 4.090 15 C -0.152 4.152 16 C -0.159 4.159 17 C -0.152 4.152 18 C -0.089 4.089 19 C -0.246 4.246 20 C -0.184 4.184 21 C -0.015 4.015 22 N -0.432 5.432 23 H 0.084 0.916 24 H 0.136 0.864 25 H 0.210 0.790 26 H 0.046 0.954 27 H 0.097 0.903 28 H 0.091 0.909 29 H 0.083 0.917 30 H 0.080 0.920 31 H 0.075 0.925 32 H 0.091 0.909 33 H 0.083 0.917 34 H 0.098 0.902 35 H 0.046 0.954 36 H 0.115 0.885 37 H 0.102 0.898 38 H 0.216 0.784 39 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -5.940 -7.648 -5.241 11.011 hybrid contribution -0.100 1.786 -0.355 1.824 sum -6.040 -5.862 -5.596 10.108 Atomic orbital electron populations 1.69880 1.07198 1.28127 1.38053 1.25721 0.94647 1.00560 0.92979 0.86439 0.80383 0.81549 0.78940 1.19722 1.20710 1.18996 1.19114 0.96580 0.91042 1.42825 0.91181 1.16884 0.92732 0.90286 0.91557 1.20483 1.00881 0.95040 1.05776 1.17345 0.86092 0.94237 0.93227 1.43689 1.29990 1.00847 1.59432 1.62311 1.12950 1.21733 1.13208 1.22610 1.01284 0.96064 0.89089 1.21559 0.95847 0.97364 1.00420 1.21600 0.96844 1.01162 0.96313 1.21559 0.99995 0.97295 0.96337 1.22580 0.88701 0.96415 1.01232 1.19682 1.00770 0.95350 1.08764 1.19798 0.99004 0.94557 1.04993 1.17890 0.91571 0.93961 0.98039 1.41817 1.32049 1.09084 1.60217 0.91628 0.86421 0.79043 0.95445 0.90300 0.90867 0.91717 0.91955 0.92532 0.90857 0.91673 0.90194 0.95370 0.88477 0.89826 0.78394 0.80140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.30 10.88 55.55 0.60 -20.70 16 2 C 0.08 1.94 5.18 -17.33 -0.09 1.85 16 3 Si 0.90 19.20 29.59 -169.99 -5.03 14.17 16 4 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 5 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 6 H -0.27 -5.57 7.11 56.52 0.40 -5.16 16 7 C -0.46 -12.33 8.50 -37.90 -0.32 -12.65 16 8 H 0.07 1.77 6.67 -52.49 -0.35 1.42 16 9 C 0.09 2.44 5.58 -106.65 -0.60 1.84 16 10 C -0.20 -5.16 8.50 -38.75 -0.33 -5.49 16 11 C 0.19 4.47 6.70 -83.77 -0.56 3.91 16 12 N -0.61 -12.29 4.96 32.41 0.16 -12.13 16 13 N -0.29 -4.90 3.79 -113.82 -0.43 -5.33 16 14 C 0.04 0.56 5.83 -3.83 -0.02 0.53 16 15 C -0.11 -1.32 6.09 -26.65 -0.16 -1.49 16 16 C -0.12 -1.29 6.00 -26.61 -0.16 -1.45 16 17 C -0.11 -1.34 6.09 -26.65 -0.16 -1.50 16 18 C 0.04 0.58 5.83 -3.84 -0.02 0.56 16 19 C -0.22 -5.22 9.49 -39.14 -0.37 -5.59 16 20 C -0.16 -3.74 9.86 -39.47 -0.39 -4.13 16 21 C 0.09 2.13 6.79 -83.23 -0.56 1.56 16 22 N -0.89 -18.52 8.98 32.75 0.29 -18.23 16 23 H 0.27 6.67 8.30 -40.82 -0.34 6.33 16 24 H 0.12 3.20 6.14 -52.49 -0.32 2.88 16 25 H 0.37 7.22 8.83 -185.15 -1.64 5.59 16 26 H 0.03 0.39 8.14 -51.93 -0.42 -0.04 16 27 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 28 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 29 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.07 0.91 8.14 -51.92 -0.42 0.49 16 33 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 35 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.10 2.18 7.35 -52.49 -0.39 1.79 16 37 H 0.08 1.76 8.06 -52.48 -0.42 1.34 16 38 H 0.39 7.94 7.04 -40.82 -0.29 7.65 16 39 H 0.37 6.61 8.83 -40.82 -0.36 6.24 16 LS Contribution 312.63 15.07 4.71 4.71 Total: -1.00 -28.39 312.63 -10.57 -38.96 By element: Atomic # 1 Polarization: 27.71 SS G_CDS: -7.13 Total: 20.59 kcal Atomic # 6 Polarization: -18.29 SS G_CDS: -3.75 Total: -22.05 kcal Atomic # 7 Polarization: -57.02 SS G_CDS: 0.63 Total: -56.39 kcal Atomic # 14 Polarization: 19.20 SS G_CDS: -5.03 Total: 14.17 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -28.39 -10.57 -38.96 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127503071.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.700 kcal (2) G-P(sol) polarization free energy of solvation -28.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.959 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds