Wall clock time and date at job start Mon Mar 30 2020 06:55:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30903 * 1 3 3 Si 1.86802 * 119.99981 * 2 1 4 4 H 1.48496 * 109.47075 * 270.00255 * 3 2 1 5 5 H 1.48500 * 109.47052 * 30.00154 * 3 2 1 6 6 H 1.48498 * 109.46969 * 150.00413 * 3 2 1 7 7 C 1.39887 * 120.00162 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00081 * 195.34538 * 7 2 1 9 9 C 1.41037 * 119.99813 * 15.35287 * 7 2 1 10 10 C 1.40667 * 120.26597 * 25.55232 * 9 7 2 11 11 C 1.38000 * 119.76528 * 180.30392 * 10 9 7 12 12 N 1.39854 * 119.84016 * 179.72373 * 11 10 9 13 13 N 1.36600 * 120.00569 * 179.97438 * 12 11 10 14 14 C 1.46840 * 110.99935 * 244.21333 * 13 12 11 15 15 C 1.53043 * 109.52384 * 174.15859 * 14 13 12 16 16 C 1.53121 * 109.27688 * 59.17449 * 15 14 13 17 17 C 1.53122 * 109.16157 * 302.34848 * 16 15 14 18 18 C 1.46843 * 111.00090 * 119.99677 * 13 12 11 19 19 C 1.39608 * 120.32297 * 359.44134 * 11 10 9 20 20 C 1.38052 * 120.54628 * 0.56297 * 19 11 10 21 21 C 1.38733 * 120.22207 * 359.72350 * 20 19 11 22 22 N 1.38863 * 120.16610 * 180.02562 * 21 20 19 23 23 H 0.96999 * 120.00062 * 359.97438 * 1 2 3 24 24 H 1.08001 * 120.11791 * 0.02562 * 10 9 7 25 25 H 0.97001 * 119.99695 * 359.97438 * 12 11 10 26 26 H 1.09000 * 109.46216 * 294.16755 * 14 13 12 27 27 H 1.09002 * 109.46857 * 54.14010 * 14 13 12 28 28 H 1.09002 * 109.50121 * 299.23443 * 15 14 13 29 29 H 1.08996 * 109.50645 * 179.11714 * 15 14 13 30 30 H 1.08996 * 109.52169 * 182.44283 * 16 15 14 31 31 H 1.08995 * 109.52105 * 62.25637 * 16 15 14 32 32 H 1.09007 * 109.50168 * 297.71306 * 17 16 15 33 33 H 1.08996 * 109.50204 * 177.59748 * 17 16 15 34 34 H 1.08999 * 109.46335 * 305.85995 * 18 13 12 35 35 H 1.08999 * 109.46381 * 65.82805 * 18 13 12 36 36 H 1.07997 * 119.72198 * 180.28389 * 19 11 10 37 37 H 1.08004 * 119.88665 * 179.69830 * 20 19 11 38 38 H 0.97003 * 120.00085 * 179.97438 * 22 21 20 39 39 H 0.97003 * 119.99898 * 359.97229 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2430 1.6178 0.0000 4 1 2.4905 2.0464 -1.4000 5 1 1.4405 2.6527 0.7001 6 1 3.5406 1.4401 0.6999 7 6 2.0085 -1.2114 -0.0005 8 1 3.0596 -1.2282 0.2470 9 6 1.3411 -2.4109 -0.3245 10 6 0.1934 -2.3864 -1.1375 11 6 -0.4552 -3.5655 -1.4428 12 7 -1.5998 -3.5424 -2.2462 13 7 -2.2442 -4.7076 -2.5510 14 6 -2.1898 -4.9773 -3.9933 15 6 -2.7910 -6.3554 -4.2790 16 6 -4.2415 -6.3855 -3.7895 17 6 -4.2745 -6.0539 -2.2950 18 6 -3.6303 -4.6846 -2.0669 19 6 0.0289 -4.7821 -0.9584 20 6 1.1540 -4.8215 -0.1595 21 6 1.8204 -3.6491 0.1664 22 7 2.9524 -3.6901 0.9697 23 1 -0.4850 0.8400 0.0004 24 1 -0.1814 -1.4475 -1.5177 25 1 -1.9360 -2.6987 -2.5870 26 1 -2.7581 -4.2155 -4.5270 27 1 -1.1525 -4.9572 -4.3278 28 1 -2.2147 -7.1192 -3.7568 29 1 -2.7647 -6.5487 -5.3514 30 1 -4.6601 -7.3787 -3.9516 31 1 -4.8268 -5.6484 -4.3392 32 1 -3.7216 -6.8129 -1.7415 33 1 -5.3082 -6.0318 -1.9499 34 1 -3.6394 -4.4518 -1.0021 35 1 -4.1919 -3.9241 -2.6095 36 1 -0.4837 -5.6996 -1.2072 37 1 1.5165 -5.7681 0.2134 38 1 3.4167 -2.8690 1.1958 39 1 3.2788 -4.5399 1.3047 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000127503071.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:55:34 Heat of formation + Delta-G solvation = 31.175961 kcal Electronic energy + Delta-G solvation = -19594.856239 eV Core-core repulsion = 16729.564731 eV Total energy + Delta-G solvation = -2865.291507 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.154 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.40761 -39.22184 -36.40665 -35.30823 -34.02977 -31.77719 -31.25149 -30.85323 -27.69214 -26.54451 -24.30684 -23.95548 -22.96096 -21.47193 -20.73195 -19.05389 -18.28980 -17.47600 -17.01254 -16.72292 -16.30350 -16.09337 -15.55754 -14.75325 -14.66793 -14.45015 -14.27094 -13.98834 -13.80642 -13.64908 -13.20908 -13.06789 -12.85064 -12.71402 -12.18672 -12.11144 -11.85719 -11.72861 -11.62030 -11.44086 -11.28724 -11.13108 -10.92162 -9.55021 -9.44604 -9.11912 -8.46974 -7.33131 -5.96524 1.16096 1.41885 1.52972 1.53466 1.68488 2.23229 2.28790 2.95966 3.63486 3.80584 3.94400 4.01673 4.03601 4.12612 4.28133 4.37839 4.57985 4.62115 4.70303 4.91059 4.91703 4.99098 5.03839 5.14785 5.21608 5.25770 5.28783 5.42938 5.46682 5.55673 5.64237 6.01840 6.07880 6.14166 6.24004 6.37747 6.62053 7.01835 7.09442 7.13269 7.49111 7.69850 7.75632 8.53919 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.025846 B = 0.005217 C = 0.004618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1083.071484 B = 5366.085847 C = 6061.537772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.838 5.838 2 C 0.033 3.967 3 Si 0.974 3.026 4 H -0.270 1.270 5 H -0.276 1.276 6 H -0.258 1.258 7 C -0.491 4.491 8 H 0.074 0.926 9 C 0.058 3.942 10 C -0.220 4.220 11 C 0.187 3.813 12 N -0.610 5.610 13 N -0.300 5.300 14 C 0.038 3.962 15 C -0.108 4.108 16 C -0.117 4.117 17 C -0.108 4.108 18 C 0.039 3.961 19 C -0.226 4.226 20 C -0.163 4.163 21 C 0.073 3.927 22 N -0.879 5.879 23 H 0.278 0.722 24 H 0.099 0.901 25 H 0.372 0.628 26 H 0.033 0.967 27 H 0.060 0.940 28 H 0.066 0.934 29 H 0.087 0.913 30 H 0.086 0.914 31 H 0.063 0.937 32 H 0.066 0.934 33 H 0.086 0.914 34 H 0.057 0.943 35 H 0.034 0.966 36 H 0.108 0.892 37 H 0.110 0.890 38 H 0.390 0.610 39 H 0.390 0.610 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.357 -8.298 -6.000 12.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.466 5.466 2 C -0.179 4.179 3 Si 0.797 3.203 4 H -0.195 1.195 5 H -0.201 1.201 6 H -0.181 1.181 7 C -0.523 4.523 8 H 0.092 0.908 9 C 0.052 3.948 10 C -0.246 4.246 11 C 0.089 3.911 12 N -0.337 5.337 13 N -0.117 5.117 14 C -0.090 4.090 15 C -0.146 4.146 16 C -0.154 4.154 17 C -0.146 4.146 18 C -0.089 4.089 19 C -0.250 4.250 20 C -0.187 4.187 21 C -0.029 4.029 22 N -0.422 5.422 23 H 0.088 0.912 24 H 0.117 0.883 25 H 0.209 0.791 26 H 0.051 0.949 27 H 0.079 0.921 28 H 0.085 0.915 29 H 0.106 0.894 30 H 0.105 0.895 31 H 0.082 0.918 32 H 0.085 0.915 33 H 0.105 0.895 34 H 0.076 0.924 35 H 0.052 0.948 36 H 0.126 0.874 37 H 0.128 0.872 38 H 0.218 0.782 39 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -6.401 -8.671 -5.787 12.233 hybrid contribution -0.020 2.003 -0.209 2.014 sum -6.421 -6.668 -5.996 11.029 Atomic orbital electron populations 1.69970 1.08692 1.29206 1.38701 1.26547 0.95394 1.03826 0.92155 0.85322 0.79154 0.76928 0.78923 1.19480 1.20106 1.18123 1.19383 0.96935 0.91914 1.44043 0.90768 1.17277 0.93515 0.91572 0.92388 1.20434 1.01905 0.95118 1.07108 1.17394 0.86848 0.93711 0.93167 1.43616 1.29316 1.02129 1.58673 1.62363 1.14158 1.20067 1.15070 1.22648 1.00713 0.98285 0.87369 1.21566 0.96366 0.94806 1.01896 1.21595 0.96043 1.02792 0.94976 1.21564 1.00677 0.94760 0.97621 1.22615 0.87694 0.98816 0.99813 1.19875 1.00955 0.95478 1.08656 1.20104 0.98712 0.95337 1.04540 1.18040 0.92672 0.93650 0.98569 1.41684 1.30962 1.10141 1.59456 0.91227 0.88347 0.79099 0.94869 0.92105 0.91484 0.89416 0.89521 0.91787 0.91501 0.89510 0.92432 0.94816 0.87418 0.87211 0.78213 0.78198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -45.59 10.88 21.82 0.24 -45.35 16 2 C 0.03 1.70 5.18 85.23 0.44 2.14 16 3 Si 0.97 39.76 29.59 68.60 2.03 41.79 16 4 H -0.27 -10.82 7.11 99.48 0.71 -10.11 16 5 H -0.28 -10.90 7.11 99.48 0.71 -10.19 16 6 H -0.26 -10.07 7.11 99.48 0.71 -9.36 16 7 C -0.49 -26.65 8.50 23.36 0.20 -26.45 16 8 H 0.07 3.81 6.67 -2.91 -0.02 3.79 16 9 C 0.06 3.18 5.58 -21.18 -0.12 3.06 16 10 C -0.22 -12.01 8.50 22.81 0.19 -11.81 16 11 C 0.19 9.14 6.70 38.14 0.26 9.39 16 12 N -0.61 -25.10 4.96 -51.38 -0.25 -25.36 16 13 N -0.30 -10.19 3.79 -514.02 -1.95 -12.13 16 14 C 0.04 1.07 5.83 86.33 0.50 1.58 16 15 C -0.11 -2.25 6.09 30.65 0.19 -2.07 16 16 C -0.12 -2.08 6.00 30.68 0.18 -1.89 16 17 C -0.11 -2.30 6.09 30.65 0.19 -2.11 16 18 C 0.04 1.12 5.83 86.33 0.50 1.63 16 19 C -0.23 -10.62 9.49 22.56 0.21 -10.41 16 20 C -0.16 -7.54 9.86 22.34 0.22 -7.32 16 21 C 0.07 3.60 6.79 38.97 0.26 3.86 16 22 N -0.88 -36.06 8.98 -50.31 -0.45 -36.51 16 23 H 0.28 13.89 8.30 -92.71 -0.77 13.12 16 24 H 0.10 5.65 6.14 -2.91 -0.02 5.63 16 25 H 0.37 14.94 8.83 -215.50 -1.90 13.04 16 26 H 0.03 0.90 8.14 -2.39 -0.02 0.88 16 27 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 28 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 29 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 30 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 32 H 0.07 1.53 8.14 -2.38 -0.02 1.51 16 33 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 34 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 35 H 0.03 0.93 8.14 -2.39 -0.02 0.91 16 36 H 0.11 4.76 7.35 -2.91 -0.02 4.74 16 37 H 0.11 4.41 8.06 -2.91 -0.02 4.39 16 38 H 0.39 15.81 7.04 -92.71 -0.65 15.15 16 39 H 0.39 13.24 8.83 -92.71 -0.82 12.42 16 Total: -1.00 -62.14 312.63 0.55 -61.59 By element: Atomic # 1 Polarization: 58.67 SS G_CDS: -2.30 Total: 56.37 kcal Atomic # 6 Polarization: -43.63 SS G_CDS: 3.24 Total: -40.40 kcal Atomic # 7 Polarization: -116.93 SS G_CDS: -2.42 Total: -119.35 kcal Atomic # 14 Polarization: 39.76 SS G_CDS: 2.03 Total: 41.79 kcal Total: -62.14 0.55 -61.59 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127503071.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.765 kcal (2) G-P(sol) polarization free energy of solvation -62.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.589 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds