Wall clock time and date at job start Mon Mar 30 2020 06:14:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.47274 * 2 1 4 4 N 1.46497 * 109.46959 * 120.00144 * 2 1 3 5 5 C 1.37096 * 120.00301 * 309.41732 * 4 2 1 6 6 H 1.07999 * 120.00099 * 182.07573 * 5 4 2 7 7 C 1.38953 * 120.00060 * 2.34933 * 5 4 2 8 8 N 1.31418 * 119.99668 * 326.62401 * 7 5 4 9 9 Si 1.86799 * 120.00240 * 146.62294 * 7 5 4 10 10 H 1.48496 * 109.46816 * 94.99702 * 9 7 5 11 11 H 1.48503 * 109.46751 * 214.99775 * 9 7 5 12 12 H 1.48502 * 109.46763 * 334.99407 * 9 7 5 13 13 C 1.34784 * 119.99763 * 129.41582 * 4 2 1 14 14 O 1.21294 * 119.99826 * 184.10782 * 13 4 2 15 15 C 1.50693 * 119.99893 * 4.11571 * 13 4 2 16 16 H 1.08996 * 109.47509 * 51.22868 * 15 13 4 17 17 C 1.53007 * 109.47214 * 291.22737 * 15 13 4 18 18 C 1.50705 * 109.47214 * 171.23354 * 15 13 4 19 19 C 1.38235 * 119.99717 * 59.72382 * 18 15 13 20 20 C 1.38238 * 119.99463 * 179.81456 * 19 18 15 21 21 C 1.38231 * 120.00298 * 0.39266 * 20 19 18 22 22 C 1.38232 * 119.99772 * 359.86057 * 21 20 19 23 23 C 1.38226 * 119.99808 * 239.99755 * 18 15 13 24 24 H 1.09005 * 109.47030 * 266.93692 * 1 2 3 25 25 H 1.09000 * 109.47118 * 26.93454 * 1 2 3 26 26 H 1.08991 * 109.47359 * 146.93786 * 1 2 3 27 27 H 1.09000 * 109.46715 * 239.99894 * 2 1 3 28 28 H 1.08995 * 109.47123 * 213.69562 * 3 2 1 29 29 H 1.09001 * 109.46980 * 333.69944 * 3 2 1 30 30 H 1.09002 * 109.46667 * 93.69369 * 3 2 1 31 31 H 0.96996 * 119.99572 * 179.97438 * 8 7 5 32 32 H 1.08995 * 109.47404 * 184.91307 * 17 15 13 33 33 H 1.08997 * 109.47207 * 304.92460 * 17 15 13 34 34 H 1.09001 * 109.46666 * 64.91720 * 17 15 13 35 35 H 1.08002 * 120.00304 * 359.97438 * 19 18 15 36 36 H 1.08001 * 119.99432 * 180.22849 * 20 19 18 37 37 H 1.08003 * 120.00044 * 179.83334 * 21 20 19 38 38 H 1.08007 * 120.00093 * 179.97438 * 22 21 20 39 39 H 1.08001 * 120.00567 * 359.97438 * 23 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 1.5361 -0.3451 2.4321 6 1 1.9204 -0.8309 3.3168 7 6 0.5488 0.6259 2.5461 8 7 0.5186 1.6343 1.7039 9 14 -0.7357 0.4981 3.8964 10 1 -0.3050 1.3038 5.0670 11 1 -2.0353 1.0112 3.3934 12 1 -0.8878 -0.9223 4.3019 13 6 2.9417 -1.6658 1.0815 14 8 3.2912 -2.2883 2.0621 15 6 3.5400 -1.9824 -0.2649 16 1 3.9041 -1.0642 -0.7257 17 6 2.4731 -2.6145 -1.1611 18 6 4.6856 -2.9461 -0.0915 19 6 4.4659 -4.1849 0.4813 20 6 5.5161 -5.0703 0.6368 21 6 6.7872 -4.7139 0.2270 22 6 7.0077 -3.4731 -0.3410 23 6 5.9569 -2.5891 -0.5001 24 1 -0.3633 -0.0549 1.0262 25 1 -0.3633 0.9162 -0.4655 26 1 -0.3633 -0.8612 -0.5606 27 1 1.8933 -0.5139 -0.8900 28 1 2.9673 1.5000 -0.5701 29 1 1.2926 2.0921 -0.4553 30 1 2.2236 1.7629 1.0256 31 1 -0.1708 2.3120 1.7832 32 1 2.9262 -2.9231 -2.1032 33 1 2.0469 -3.4840 -0.6608 34 1 1.6860 -1.8865 -1.3579 35 1 3.4735 -4.4619 0.8050 36 1 5.3438 -6.0396 1.0810 37 1 7.6082 -5.4046 0.3510 38 1 8.0010 -3.1943 -0.6608 39 1 6.1292 -1.6197 -0.9439 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000129432719.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:58 Heat of formation + Delta-G solvation = 41.737815 kcal Electronic energy + Delta-G solvation = -20429.941024 eV Core-core repulsion = 17532.814761 eV Total energy + Delta-G solvation = -2897.126262 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.67523 -38.29488 -35.92530 -33.62916 -31.75752 -30.53747 -30.35298 -28.98102 -26.07357 -25.14353 -23.80821 -22.17191 -21.22291 -20.72658 -18.75044 -16.62612 -16.31238 -16.19019 -14.92489 -14.78217 -14.22372 -14.01177 -13.74488 -13.42070 -13.06470 -12.97434 -12.79273 -12.48651 -12.30256 -11.86280 -11.76223 -11.52479 -11.35635 -11.07267 -10.79176 -10.58224 -10.48865 -10.45700 -10.32352 -10.03793 -9.88030 -9.39138 -8.61031 -8.51490 -8.32301 -8.14574 -7.52234 -6.14318 -3.73631 1.74938 1.82727 3.12555 3.26874 3.35057 3.86510 4.09085 4.22743 4.82364 4.98291 5.13186 5.23319 5.31296 5.45351 5.58149 5.69778 5.73045 5.92750 5.94871 5.95152 6.16058 6.23915 6.38224 6.40600 6.44375 6.48097 6.61788 6.81594 6.85107 6.89142 6.96387 7.11430 7.12856 7.24787 7.39993 7.57485 7.60454 8.02844 8.17915 8.55918 9.19510 9.46826 10.01955 10.55704 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.030524 B = 0.006100 C = 0.005624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.095636 B = 4589.168889 C = 4977.708659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.140 3.860 3 C -0.115 4.115 4 N -0.439 5.439 5 C -0.311 4.311 6 H 0.105 0.895 7 C 0.038 3.962 8 N -0.842 5.842 9 Si 0.894 3.106 10 H -0.279 1.279 11 H -0.281 1.281 12 H -0.270 1.270 13 C 0.450 3.550 14 O -0.583 6.583 15 C -0.068 4.068 16 H 0.087 0.913 17 C -0.147 4.147 18 C -0.049 4.049 19 C -0.075 4.075 20 C -0.128 4.128 21 C -0.131 4.131 22 C -0.129 4.129 23 C -0.118 4.118 24 H 0.090 0.910 25 H 0.049 0.951 26 H 0.008 0.992 27 H 0.065 0.935 28 H -0.011 1.011 29 H 0.044 0.956 30 H 0.112 0.888 31 H 0.261 0.739 32 H 0.056 0.944 33 H 0.059 0.941 34 H 0.075 0.925 35 H 0.121 0.879 36 H 0.116 0.884 37 H 0.114 0.886 38 H 0.115 0.885 39 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.566 -5.228 -7.569 10.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.036 3.964 3 C -0.173 4.173 4 N -0.158 5.158 5 C -0.438 4.438 6 H 0.123 0.877 7 C -0.165 4.165 8 N -0.481 5.481 9 Si 0.720 3.280 10 H -0.205 1.205 11 H -0.207 1.207 12 H -0.194 1.194 13 C 0.238 3.762 14 O -0.468 6.468 15 C -0.090 4.090 16 H 0.105 0.895 17 C -0.204 4.204 18 C -0.049 4.049 19 C -0.093 4.093 20 C -0.146 4.146 21 C -0.149 4.149 22 C -0.148 4.148 23 C -0.136 4.136 24 H 0.109 0.891 25 H 0.068 0.932 26 H 0.027 0.973 27 H 0.083 0.917 28 H 0.008 0.992 29 H 0.063 0.937 30 H 0.130 0.870 31 H 0.073 0.927 32 H 0.075 0.925 33 H 0.078 0.922 34 H 0.093 0.907 35 H 0.139 0.861 36 H 0.134 0.866 37 H 0.132 0.868 38 H 0.133 0.867 39 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 4.588 -5.328 -7.106 9.997 hybrid contribution -0.726 0.258 0.568 0.957 sum 3.862 -5.070 -6.538 9.130 Atomic orbital electron populations 1.22480 0.95603 0.97644 1.03836 1.21099 0.94888 0.94080 0.86349 1.22389 0.95424 0.95070 1.04451 1.44019 1.34961 1.30322 1.06452 1.19553 1.18200 1.20503 0.85514 0.87715 1.24970 0.98987 0.94495 0.98024 1.70985 1.31154 1.08143 1.37861 0.86460 0.81110 0.79076 0.81383 1.20548 1.20677 1.19427 1.19631 0.83308 0.83838 0.89431 1.90525 1.64004 1.52871 1.39400 1.20200 0.94419 0.97743 0.96624 0.89493 1.22043 0.98247 1.01537 0.98563 1.19479 0.93731 0.94418 0.97292 1.20969 0.99338 0.93028 0.95979 1.21079 0.93138 0.99582 1.00820 1.21009 0.96788 0.96790 1.00305 1.20971 0.98405 0.94449 1.00928 1.21011 0.92393 0.99312 1.00926 0.89115 0.93164 0.97339 0.91697 0.99222 0.93738 0.87017 0.92711 0.92464 0.92233 0.90668 0.86113 0.86638 0.86830 0.86675 0.86507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.93 8.23 37.16 0.31 -2.63 16 2 C 0.14 3.01 2.40 -67.93 -0.16 2.85 16 3 C -0.12 -2.51 8.12 37.16 0.30 -2.21 16 4 N -0.44 -10.83 2.55 -107.73 -0.27 -11.10 16 5 C -0.31 -8.35 8.72 -14.93 -0.13 -8.48 16 6 H 0.11 3.04 7.35 -52.49 -0.39 2.66 16 7 C 0.04 0.93 3.00 -17.46 -0.05 0.88 16 8 N -0.84 -20.29 5.99 55.50 0.33 -19.96 16 9 Si 0.89 19.85 29.38 -169.99 -4.99 14.85 16 10 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 11 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 12 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 13 C 0.45 10.81 6.86 -10.99 -0.08 10.74 16 14 O -0.58 -15.95 14.38 5.55 0.08 -15.87 16 15 C -0.07 -1.29 2.06 -92.92 -0.19 -1.48 16 16 H 0.09 1.56 7.43 -51.93 -0.39 1.17 16 17 C -0.15 -2.37 8.52 37.16 0.32 -2.05 16 18 C -0.05 -0.89 4.49 -104.63 -0.47 -1.36 16 19 C -0.08 -1.35 7.90 -39.58 -0.31 -1.66 16 20 C -0.13 -1.98 10.05 -39.58 -0.40 -2.38 16 21 C -0.13 -1.84 10.05 -39.59 -0.40 -2.24 16 22 C -0.13 -1.85 10.05 -39.58 -0.40 -2.25 16 23 C -0.12 -1.90 9.67 -39.58 -0.38 -2.28 16 24 H 0.09 2.16 4.03 -51.93 -0.21 1.95 16 25 H 0.05 1.02 7.13 -51.93 -0.37 0.65 16 26 H 0.01 0.15 8.14 -51.93 -0.42 -0.27 16 27 H 0.07 1.24 3.71 -51.93 -0.19 1.05 16 28 H -0.01 -0.22 8.14 -51.93 -0.42 -0.65 16 29 H 0.04 0.92 7.01 -51.93 -0.36 0.56 16 30 H 0.11 2.81 5.49 -51.93 -0.29 2.52 16 31 H 0.26 6.04 8.31 -40.82 -0.34 5.70 16 32 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.06 0.98 7.58 -51.93 -0.39 0.59 16 34 H 0.07 1.21 5.27 -51.93 -0.27 0.94 16 35 H 0.12 2.27 7.36 -52.49 -0.39 1.88 16 36 H 0.12 1.51 8.06 -52.49 -0.42 1.09 16 37 H 0.11 1.27 8.06 -52.48 -0.42 0.85 16 38 H 0.12 1.32 8.06 -52.48 -0.42 0.90 16 39 H 0.12 1.66 7.95 -52.49 -0.42 1.25 16 LS Contribution 300.95 15.07 4.54 4.54 Total: -1.00 -28.52 300.95 -7.70 -36.22 By element: Atomic # 1 Polarization: 11.21 SS G_CDS: -5.34 Total: 5.87 kcal Atomic # 6 Polarization: -12.50 SS G_CDS: -2.05 Total: -14.55 kcal Atomic # 7 Polarization: -31.12 SS G_CDS: 0.06 Total: -31.06 kcal Atomic # 8 Polarization: -15.95 SS G_CDS: 0.08 Total: -15.87 kcal Atomic # 14 Polarization: 19.85 SS G_CDS: -4.99 Total: 14.85 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -28.52 -7.70 -36.22 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000129432719.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.956 kcal (2) G-P(sol) polarization free energy of solvation -28.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.218 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds