Wall clock time and date at job start Mon Mar 30 2020 06:14:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.47274 * 2 1 4 4 N 1.46497 * 109.46959 * 120.00144 * 2 1 3 5 5 C 1.37096 * 120.00301 * 309.41732 * 4 2 1 6 6 H 1.07999 * 120.00099 * 182.07573 * 5 4 2 7 7 C 1.38953 * 120.00060 * 2.34933 * 5 4 2 8 8 N 1.31418 * 119.99668 * 326.62401 * 7 5 4 9 9 Si 1.86799 * 120.00240 * 146.62294 * 7 5 4 10 10 H 1.48496 * 109.46816 * 94.99702 * 9 7 5 11 11 H 1.48503 * 109.46751 * 214.99775 * 9 7 5 12 12 H 1.48502 * 109.46763 * 334.99407 * 9 7 5 13 13 C 1.34784 * 119.99763 * 129.41582 * 4 2 1 14 14 O 1.21294 * 119.99826 * 184.10782 * 13 4 2 15 15 C 1.50693 * 119.99893 * 4.11571 * 13 4 2 16 16 H 1.08996 * 109.47509 * 51.22868 * 15 13 4 17 17 C 1.53007 * 109.47214 * 291.22737 * 15 13 4 18 18 C 1.50705 * 109.47214 * 171.23354 * 15 13 4 19 19 C 1.38235 * 119.99717 * 59.72382 * 18 15 13 20 20 C 1.38238 * 119.99463 * 179.81456 * 19 18 15 21 21 C 1.38231 * 120.00298 * 0.39266 * 20 19 18 22 22 C 1.38232 * 119.99772 * 359.86057 * 21 20 19 23 23 C 1.38226 * 119.99808 * 239.99755 * 18 15 13 24 24 H 1.09005 * 109.47030 * 266.93692 * 1 2 3 25 25 H 1.09000 * 109.47118 * 26.93454 * 1 2 3 26 26 H 1.08991 * 109.47359 * 146.93786 * 1 2 3 27 27 H 1.09000 * 109.46715 * 239.99894 * 2 1 3 28 28 H 1.08995 * 109.47123 * 213.69562 * 3 2 1 29 29 H 1.09001 * 109.46980 * 333.69944 * 3 2 1 30 30 H 1.09002 * 109.46667 * 93.69369 * 3 2 1 31 31 H 0.96996 * 119.99572 * 179.97438 * 8 7 5 32 32 H 1.08995 * 109.47404 * 184.91307 * 17 15 13 33 33 H 1.08997 * 109.47207 * 304.92460 * 17 15 13 34 34 H 1.09001 * 109.46666 * 64.91720 * 17 15 13 35 35 H 1.08002 * 120.00304 * 359.97438 * 19 18 15 36 36 H 1.08001 * 119.99432 * 180.22849 * 20 19 18 37 37 H 1.08003 * 120.00044 * 179.83334 * 21 20 19 38 38 H 1.08007 * 120.00093 * 179.97438 * 22 21 20 39 39 H 1.08001 * 120.00567 * 359.97438 * 23 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 1.5361 -0.3451 2.4321 6 1 1.9204 -0.8309 3.3168 7 6 0.5488 0.6259 2.5461 8 7 0.5186 1.6343 1.7039 9 14 -0.7357 0.4981 3.8964 10 1 -0.3050 1.3038 5.0670 11 1 -2.0353 1.0112 3.3934 12 1 -0.8878 -0.9223 4.3019 13 6 2.9417 -1.6658 1.0815 14 8 3.2912 -2.2883 2.0621 15 6 3.5400 -1.9824 -0.2649 16 1 3.9041 -1.0642 -0.7257 17 6 2.4731 -2.6145 -1.1611 18 6 4.6856 -2.9461 -0.0915 19 6 4.4659 -4.1849 0.4813 20 6 5.5161 -5.0703 0.6368 21 6 6.7872 -4.7139 0.2270 22 6 7.0077 -3.4731 -0.3410 23 6 5.9569 -2.5891 -0.5001 24 1 -0.3633 -0.0549 1.0262 25 1 -0.3633 0.9162 -0.4655 26 1 -0.3633 -0.8612 -0.5606 27 1 1.8933 -0.5139 -0.8900 28 1 2.9673 1.5000 -0.5701 29 1 1.2926 2.0921 -0.4553 30 1 2.2236 1.7629 1.0256 31 1 -0.1708 2.3120 1.7832 32 1 2.9262 -2.9231 -2.1032 33 1 2.0469 -3.4840 -0.6608 34 1 1.6860 -1.8865 -1.3579 35 1 3.4735 -4.4619 0.8050 36 1 5.3438 -6.0396 1.0810 37 1 7.6082 -5.4046 0.3510 38 1 8.0010 -3.1943 -0.6608 39 1 6.1292 -1.6197 -0.9439 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000129432719.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:58 Heat of formation + Delta-G solvation = 27.269062 kcal Electronic energy + Delta-G solvation = -20430.568436 eV Core-core repulsion = 17532.814761 eV Total energy + Delta-G solvation = -2897.753674 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.26778 -39.72817 -37.74728 -35.14416 -33.59294 -32.19268 -31.69636 -30.26992 -27.82242 -26.95903 -25.26110 -23.38549 -22.69484 -22.45450 -20.35912 -18.49338 -17.92808 -17.54737 -16.50273 -16.30501 -15.86073 -15.56760 -15.33606 -15.05686 -14.63041 -14.42831 -14.27223 -14.07737 -13.74264 -13.46688 -13.32060 -13.02744 -12.91383 -12.60842 -12.46418 -12.31939 -12.10742 -11.99431 -11.76666 -11.71292 -11.60585 -11.12170 -10.42693 -10.13434 -9.67522 -9.53729 -9.40384 -8.06053 -5.73257 0.53743 0.62076 1.31415 1.42647 1.53290 2.05107 2.29423 2.90089 3.01938 3.21034 3.76281 3.90017 4.15108 4.19985 4.23915 4.34299 4.39634 4.43834 4.66031 4.73163 4.74613 4.75250 4.91147 4.95997 5.12675 5.18592 5.21021 5.25151 5.27772 5.41171 5.50382 5.61717 5.64836 5.69317 5.83154 5.86052 6.09992 6.23280 6.28413 6.64937 7.26308 7.59056 8.15179 8.61037 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.030524 B = 0.006100 C = 0.005624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.095636 B = 4589.168889 C = 4977.708659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.134 3.866 3 C -0.106 4.106 4 N -0.446 5.446 5 C -0.356 4.356 6 H 0.066 0.934 7 C 0.028 3.972 8 N -0.834 5.834 9 Si 0.946 3.054 10 H -0.278 1.278 11 H -0.263 1.263 12 H -0.286 1.286 13 C 0.435 3.565 14 O -0.630 6.630 15 C -0.058 4.058 16 H 0.098 0.902 17 C -0.139 4.139 18 C -0.075 4.075 19 C -0.101 4.101 20 C -0.136 4.136 21 C -0.127 4.127 22 C -0.127 4.127 23 C -0.129 4.129 24 H 0.064 0.936 25 H 0.059 0.941 26 H 0.027 0.973 27 H 0.094 0.906 28 H 0.007 0.993 29 H 0.052 0.948 30 H 0.076 0.924 31 H 0.268 0.732 32 H 0.088 0.912 33 H 0.047 0.953 34 H 0.076 0.924 35 H 0.096 0.904 36 H 0.134 0.866 37 H 0.149 0.851 38 H 0.150 0.850 39 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.312 -5.075 -9.478 11.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.031 3.969 3 C -0.164 4.164 4 N -0.164 5.164 5 C -0.483 4.483 6 H 0.084 0.916 7 C -0.177 4.177 8 N -0.472 5.472 9 Si 0.771 3.229 10 H -0.204 1.204 11 H -0.188 1.188 12 H -0.211 1.211 13 C 0.225 3.775 14 O -0.518 6.518 15 C -0.080 4.080 16 H 0.116 0.884 17 C -0.196 4.196 18 C -0.075 4.075 19 C -0.119 4.119 20 C -0.154 4.154 21 C -0.145 4.145 22 C -0.144 4.144 23 C -0.147 4.147 24 H 0.082 0.918 25 H 0.078 0.922 26 H 0.045 0.955 27 H 0.111 0.889 28 H 0.026 0.974 29 H 0.071 0.929 30 H 0.095 0.905 31 H 0.079 0.921 32 H 0.107 0.893 33 H 0.066 0.934 34 H 0.094 0.906 35 H 0.115 0.885 36 H 0.152 0.848 37 H 0.167 0.833 38 H 0.167 0.833 39 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 5.319 -5.138 -9.049 11.686 hybrid contribution -0.917 0.225 1.191 1.520 sum 4.402 -4.913 -7.857 10.259 Atomic orbital electron populations 1.22399 0.95365 0.99006 1.02509 1.21345 0.95203 0.94103 0.86224 1.22203 0.96538 0.95189 1.02514 1.44185 1.35101 1.30561 1.06560 1.19259 1.21115 1.22225 0.85730 0.91625 1.25346 0.98878 0.93610 0.99826 1.71075 1.30716 1.07491 1.37868 0.85706 0.79746 0.77949 0.79518 1.20439 1.18782 1.21125 1.20609 0.82817 0.83001 0.91104 1.90476 1.65409 1.54337 1.41608 1.20134 0.95308 0.98780 0.93741 0.88365 1.21992 0.97586 1.00845 0.99184 1.19558 0.94486 0.94403 0.99048 1.20947 0.99220 0.94169 0.97547 1.21362 0.93301 1.00014 1.00718 1.21443 0.96955 0.97367 0.98710 1.21411 0.99412 0.93973 0.99651 1.21286 0.91927 1.00503 1.00962 0.91759 0.92161 0.95460 0.88851 0.97436 0.92906 0.90511 0.92060 0.89346 0.93391 0.90552 0.88546 0.84820 0.83346 0.83265 0.84893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.57 8.23 71.98 0.59 -4.98 16 2 C 0.13 5.67 2.40 44.99 0.11 5.78 16 3 C -0.11 -4.50 8.12 71.98 0.58 -3.92 16 4 N -0.45 -22.57 2.55 -613.13 -1.56 -24.13 16 5 C -0.36 -19.99 8.72 84.04 0.73 -19.26 16 6 H 0.07 4.11 7.35 -2.91 -0.02 4.09 16 7 C 0.03 1.39 3.00 84.93 0.25 1.64 16 8 N -0.83 -39.81 5.99 21.66 0.13 -39.68 16 9 Si 0.95 41.28 29.38 68.60 2.02 43.30 16 10 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 11 H -0.26 -10.69 7.11 99.48 0.71 -9.98 16 12 H -0.29 -13.17 7.11 99.48 0.71 -12.47 16 13 C 0.44 21.63 6.86 87.65 0.60 22.23 16 14 O -0.63 -36.52 14.38 -3.07 -0.04 -36.56 16 15 C -0.06 -2.19 2.06 -12.28 -0.03 -2.21 16 16 H 0.10 3.40 7.43 -2.39 -0.02 3.38 16 17 C -0.14 -4.35 8.52 71.98 0.61 -3.73 16 18 C -0.07 -2.69 4.49 -19.87 -0.09 -2.78 16 19 C -0.10 -3.69 7.90 22.27 0.18 -3.51 16 20 C -0.14 -4.08 10.05 22.27 0.22 -3.86 16 21 C -0.13 -3.22 10.05 22.27 0.22 -2.99 16 22 C -0.13 -3.23 10.05 22.27 0.22 -3.01 16 23 C -0.13 -3.90 9.67 22.27 0.22 -3.69 16 24 H 0.06 3.02 4.03 -2.38 -0.01 3.01 16 25 H 0.06 2.32 7.13 -2.39 -0.02 2.30 16 26 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 27 H 0.09 3.40 3.71 -2.39 -0.01 3.39 16 28 H 0.01 0.27 8.14 -2.39 -0.02 0.25 16 29 H 0.05 2.10 7.01 -2.39 -0.02 2.08 16 30 H 0.08 3.86 5.49 -2.39 -0.01 3.84 16 31 H 0.27 12.02 8.31 -92.71 -0.77 11.25 16 32 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 33 H 0.05 1.59 7.58 -2.39 -0.02 1.58 16 34 H 0.08 2.33 5.27 -2.39 -0.01 2.31 16 35 H 0.10 3.88 7.36 -2.91 -0.02 3.86 16 36 H 0.13 3.36 8.06 -2.91 -0.02 3.34 16 37 H 0.15 2.69 8.06 -2.91 -0.02 2.67 16 38 H 0.15 2.75 8.06 -2.91 -0.02 2.73 16 39 H 0.13 3.47 7.95 -2.91 -0.02 3.45 16 Total: -1.00 -64.51 300.95 6.01 -58.49 By element: Atomic # 1 Polarization: 21.82 SS G_CDS: 1.04 Total: 22.86 kcal Atomic # 6 Polarization: -28.71 SS G_CDS: 4.44 Total: -24.27 kcal Atomic # 7 Polarization: -62.38 SS G_CDS: -1.43 Total: -63.82 kcal Atomic # 8 Polarization: -36.52 SS G_CDS: -0.04 Total: -36.56 kcal Atomic # 14 Polarization: 41.28 SS G_CDS: 2.02 Total: 43.30 kcal Total: -64.51 6.01 -58.49 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000129432719.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.761 kcal (2) G-P(sol) polarization free energy of solvation -64.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.492 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds