Wall clock time and date at job start Mon Mar 30 2020 06:24:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 109.47148 * 2 1 4 4 C 1.53006 * 109.47112 * 119.99317 * 2 1 3 5 5 H 1.08994 * 110.80703 * 171.67979 * 4 2 1 6 6 C 1.54706 * 110.74960 * 295.00402 * 4 2 1 7 7 C 1.51638 * 101.95770 * 143.62605 * 6 4 2 8 8 C 1.37741 * 132.17247 * 164.55301 * 7 6 4 9 9 C 1.38348 * 119.98295 * 180.37432 * 8 7 6 10 10 C 1.38293 * 119.76643 * 0.02562 * 9 8 7 11 11 C 1.37938 * 120.34482 * 359.80408 * 10 9 8 12 12 C 1.38884 * 107.04617 * 344.59228 * 7 6 4 13 13 O 1.36143 * 111.22994 * 358.93186 * 12 7 6 14 14 N 1.46890 * 109.47224 * 239.99557 * 2 1 3 15 15 C 1.46903 * 111.00100 * 306.04371 * 14 2 1 16 16 C 1.46905 * 111.00270 * 70.00091 * 14 2 1 17 17 C 1.50696 * 109.47192 * 170.00036 * 16 14 2 18 18 H 1.07998 * 120.00369 * 0.02562 * 17 16 14 19 19 C 1.37881 * 120.00052 * 180.02562 * 17 16 14 20 20 N 1.31519 * 119.99730 * 359.97438 * 19 17 16 21 21 Si 1.86793 * 120.00201 * 180.02562 * 19 17 16 22 22 H 1.48505 * 109.47223 * 359.97438 * 21 19 17 23 23 H 1.48505 * 109.47357 * 119.99729 * 21 19 17 24 24 H 1.48503 * 109.46918 * 239.99753 * 21 19 17 25 25 H 1.09008 * 109.46862 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47245 * 300.00125 * 1 2 3 27 27 H 1.08997 * 109.47050 * 60.00830 * 1 2 3 28 28 H 1.09002 * 110.94176 * 25.44860 * 6 4 2 29 29 H 1.08997 * 110.93460 * 261.79771 * 6 4 2 30 30 H 1.08000 * 120.01235 * 0.40729 * 8 7 6 31 31 H 1.07998 * 120.12029 * 180.02562 * 9 8 7 32 32 H 1.07991 * 119.82735 * 179.83065 * 10 9 8 33 33 H 1.08001 * 119.87563 * 180.02562 * 11 10 9 34 34 H 1.09003 * 109.46659 * 60.00335 * 15 14 2 35 35 H 1.09000 * 109.47091 * 179.97438 * 15 14 2 36 36 H 1.08999 * 109.47334 * 299.99850 * 15 14 2 37 37 H 1.08999 * 109.46580 * 289.99639 * 16 14 2 38 38 H 1.08992 * 109.46812 * 49.99547 * 16 14 2 39 39 H 0.96993 * 120.00135 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7211 1.2494 5 1 3.1196 -0.8633 1.2008 6 6 1.6462 0.0542 2.5289 7 6 1.3555 -1.0721 3.5017 8 6 1.2221 -1.0987 4.8724 9 6 0.9580 -2.2934 5.5182 10 6 0.8292 -3.4575 4.7830 11 6 0.9589 -3.4324 3.4099 12 6 1.2210 -2.2333 2.7518 13 8 1.3670 -1.9810 1.4220 14 7 2.0197 -0.6925 -1.1993 15 6 1.4344 -2.0356 -1.3076 16 6 1.7530 0.0971 -2.4090 17 6 2.4775 -0.5165 -3.5793 18 1 3.0759 -1.4045 -3.4387 19 6 2.3764 0.0557 -4.8297 20 7 1.6474 1.1368 -5.0011 21 14 3.2739 -0.7053 -6.2804 22 1 4.0191 -1.9069 -5.8265 23 1 2.2897 -1.0966 -7.3214 24 1 4.2268 0.2830 -6.8466 25 1 -0.3633 -1.0278 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5137 -0.8900 28 1 0.7569 0.6611 2.3585 29 1 2.4738 0.6696 2.8816 30 1 1.3233 -0.1873 5.4428 31 1 0.8526 -2.3168 6.5928 32 1 0.6257 -4.3910 5.2863 33 1 0.8565 -4.3461 2.8431 34 1 0.3491 -1.9550 -1.3692 35 1 1.8134 -2.5259 -2.2042 36 1 1.7060 -2.6221 -0.4299 37 1 0.6815 0.1050 -2.6087 38 1 2.1025 1.1187 -2.2604 39 1 1.5759 1.5392 -5.8807 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000134227867.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:24:42 Heat of formation + Delta-G solvation = 1.883040 kcal Electronic energy + Delta-G solvation = -19692.041067 eV Core-core repulsion = 16793.186572 eV Total energy + Delta-G solvation = -2898.854495 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.15776 -38.00506 -36.50067 -33.10701 -32.44747 -30.53099 -30.01729 -27.88345 -27.05252 -25.36239 -23.99652 -22.33142 -21.62372 -21.25571 -19.10342 -17.33069 -16.60455 -16.49118 -15.93116 -15.25332 -14.83464 -14.28610 -14.12132 -13.94224 -13.40915 -13.30930 -13.06355 -12.84988 -12.53158 -12.14416 -11.86246 -11.83372 -11.54815 -11.37071 -11.02355 -10.91602 -10.79865 -10.69972 -10.48263 -10.29600 -10.24054 -9.75629 -9.17002 -8.92909 -8.42220 -8.06696 -7.19520 -6.01625 -4.02256 1.25578 1.37242 3.31988 3.38101 3.39364 3.44702 3.70556 4.38580 4.46850 4.57854 4.82690 4.97237 5.07590 5.22926 5.24015 5.32351 5.34345 5.43616 5.58222 5.60948 5.72461 5.77787 5.95219 6.10558 6.17756 6.25879 6.31739 6.38425 6.42246 6.45191 6.49814 6.64491 6.77090 6.95862 7.30747 7.35282 7.40016 7.82260 8.09525 8.22810 8.56809 9.05947 9.61803 11.09380 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.047161 B = 0.004143 C = 0.003963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 593.568198 B = 6757.301662 C = 7063.639643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.084 3.916 3 H 0.093 0.907 4 C 0.094 3.906 5 H 0.093 0.907 6 C -0.109 4.109 7 C -0.175 4.175 8 C -0.073 4.073 9 C -0.159 4.159 10 C -0.088 4.088 11 C -0.146 4.146 12 C 0.113 3.887 13 O -0.287 6.287 14 N -0.533 5.533 15 C 0.032 3.968 16 C 0.192 3.808 17 C -0.505 4.505 18 H 0.064 0.936 19 C 0.054 3.946 20 N -0.900 5.900 21 Si 0.897 3.103 22 H -0.272 1.272 23 H -0.285 1.285 24 H -0.284 1.284 25 H 0.064 0.936 26 H 0.049 0.951 27 H 0.063 0.937 28 H 0.093 0.907 29 H 0.089 0.911 30 H 0.121 0.879 31 H 0.123 0.877 32 H 0.126 0.874 33 H 0.126 0.874 34 H 0.015 0.985 35 H 0.068 0.932 36 H 0.062 0.938 37 H -0.005 1.005 38 H 0.028 0.972 39 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.935 -4.582 19.304 19.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.025 4.025 3 H 0.111 0.889 4 C 0.038 3.962 5 H 0.111 0.889 6 C -0.146 4.146 7 C -0.176 4.176 8 C -0.091 4.091 9 C -0.177 4.177 10 C -0.106 4.106 11 C -0.165 4.165 12 C 0.067 3.933 13 O -0.200 6.200 14 N -0.256 5.256 15 C -0.116 4.116 16 C 0.067 3.933 17 C -0.544 4.544 18 H 0.082 0.918 19 C -0.147 4.147 20 N -0.539 5.539 21 Si 0.725 3.275 22 H -0.197 1.197 23 H -0.211 1.211 24 H -0.210 1.210 25 H 0.083 0.917 26 H 0.067 0.933 27 H 0.082 0.918 28 H 0.111 0.889 29 H 0.108 0.892 30 H 0.139 0.861 31 H 0.141 0.859 32 H 0.144 0.856 33 H 0.144 0.856 34 H 0.034 0.966 35 H 0.087 0.913 36 H 0.081 0.919 37 H 0.012 0.988 38 H 0.046 0.954 39 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -1.529 -4.628 18.970 19.586 hybrid contribution -0.450 -0.033 -0.889 0.998 sum -1.980 -4.662 18.081 18.777 Atomic orbital electron populations 1.22422 0.97627 1.02673 1.01546 1.21774 0.93204 0.97537 0.90018 0.88930 1.23586 0.97228 0.80659 0.94707 0.88885 1.21922 1.03104 0.96846 0.92727 1.20866 1.07036 0.95025 0.94640 1.20291 0.98309 0.98199 0.92268 1.20956 1.04503 0.92563 0.99708 1.20826 0.98580 0.98429 0.92772 1.20278 1.06568 0.95590 0.94016 1.19807 0.94995 0.94009 0.84508 1.87069 1.73768 1.40136 1.19064 1.62352 1.57148 1.03263 1.02883 1.22384 0.96413 0.91251 1.01586 1.19742 0.95089 0.93052 0.85424 1.21215 1.29113 1.11904 0.92132 0.91809 1.24987 0.95656 0.95091 0.98944 1.69967 1.40225 1.20612 1.23144 0.86452 0.79465 0.79269 0.82302 1.19650 1.21147 1.21038 0.91657 0.93255 0.91835 0.88869 0.89227 0.86132 0.85896 0.85562 0.85635 0.96608 0.91328 0.91909 0.98765 0.95407 0.93031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.12 8.00 37.16 0.30 -2.82 16 2 C 0.08 1.49 2.39 -67.71 -0.16 1.32 16 3 H 0.09 1.59 7.93 -51.93 -0.41 1.18 16 4 C 0.09 1.44 3.35 -25.83 -0.09 1.35 16 5 H 0.09 1.45 8.14 -51.93 -0.42 1.02 16 6 C -0.11 -1.35 6.49 -26.52 -0.17 -1.52 16 7 C -0.17 -2.26 6.27 -104.10 -0.65 -2.91 16 8 C -0.07 -0.79 10.03 -39.72 -0.40 -1.19 16 9 C -0.16 -1.57 10.07 -39.52 -0.40 -1.97 16 10 C -0.09 -0.90 10.02 -39.67 -0.40 -1.30 16 11 C -0.15 -1.81 10.06 -39.31 -0.40 -2.20 16 12 C 0.11 1.62 7.04 -38.96 -0.27 1.35 16 13 O -0.29 -4.64 6.93 -20.19 -0.14 -4.78 16 14 N -0.53 -11.55 4.70 -236.33 -1.11 -12.66 16 15 C 0.03 0.66 8.30 60.07 0.50 1.15 16 16 C 0.19 4.98 4.29 -4.97 -0.02 4.96 16 17 C -0.50 -14.28 8.46 -34.44 -0.29 -14.57 16 18 H 0.06 1.80 7.12 -52.49 -0.37 1.43 16 19 C 0.05 1.54 5.46 -17.82 -0.10 1.45 16 20 N -0.90 -26.79 13.29 55.43 0.74 -26.05 16 21 Si 0.90 21.79 29.54 -169.99 -5.02 16.77 16 22 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 23 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 24 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 25 H 0.06 1.16 5.68 -51.92 -0.30 0.86 16 26 H 0.05 0.71 6.41 -51.93 -0.33 0.38 16 27 H 0.06 1.19 6.91 -51.93 -0.36 0.83 16 28 H 0.09 1.12 6.19 -51.93 -0.32 0.80 16 29 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 31 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 32 H 0.13 0.95 8.06 -52.49 -0.42 0.52 16 33 H 0.13 1.41 8.06 -52.49 -0.42 0.99 16 34 H 0.02 0.32 6.21 -51.93 -0.32 0.00 16 35 H 0.07 1.51 6.76 -51.93 -0.35 1.16 16 36 H 0.06 1.20 5.50 -51.93 -0.29 0.91 16 37 H -0.01 -0.15 7.06 -51.93 -0.37 -0.52 16 38 H 0.03 0.76 7.93 -51.93 -0.41 0.35 16 39 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 306.54 15.07 4.62 4.62 Total: -1.00 -30.53 306.54 -8.97 -39.50 By element: Atomic # 1 Polarization: 5.01 SS G_CDS: -5.50 Total: -0.49 kcal Atomic # 6 Polarization: -14.35 SS G_CDS: -2.55 Total: -16.91 kcal Atomic # 7 Polarization: -38.34 SS G_CDS: -0.37 Total: -38.71 kcal Atomic # 8 Polarization: -4.64 SS G_CDS: -0.14 Total: -4.78 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -30.53 -8.97 -39.50 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000134227867.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.379 kcal (2) G-P(sol) polarization free energy of solvation -30.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.496 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds