Wall clock time and date at job start Mon Mar 30 2020 06:24:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 109.47148 * 2 1 4 4 C 1.53006 * 109.47112 * 119.99317 * 2 1 3 5 5 H 1.08994 * 110.80703 * 171.67979 * 4 2 1 6 6 C 1.54706 * 110.74960 * 295.00402 * 4 2 1 7 7 C 1.51638 * 101.95770 * 143.62605 * 6 4 2 8 8 C 1.37741 * 132.17247 * 164.55301 * 7 6 4 9 9 C 1.38348 * 119.98295 * 180.37432 * 8 7 6 10 10 C 1.38293 * 119.76643 * 0.02562 * 9 8 7 11 11 C 1.37938 * 120.34482 * 359.80408 * 10 9 8 12 12 C 1.38884 * 107.04617 * 344.59228 * 7 6 4 13 13 O 1.36143 * 111.22994 * 358.93186 * 12 7 6 14 14 N 1.46890 * 109.47224 * 239.99557 * 2 1 3 15 15 C 1.46903 * 111.00100 * 306.04371 * 14 2 1 16 16 C 1.46905 * 111.00270 * 70.00091 * 14 2 1 17 17 C 1.50696 * 109.47192 * 170.00036 * 16 14 2 18 18 H 1.07998 * 120.00369 * 0.02562 * 17 16 14 19 19 C 1.37881 * 120.00052 * 180.02562 * 17 16 14 20 20 N 1.31519 * 119.99730 * 359.97438 * 19 17 16 21 21 Si 1.86793 * 120.00201 * 180.02562 * 19 17 16 22 22 H 1.48505 * 109.47223 * 359.97438 * 21 19 17 23 23 H 1.48505 * 109.47357 * 119.99729 * 21 19 17 24 24 H 1.48503 * 109.46918 * 239.99753 * 21 19 17 25 25 H 1.09008 * 109.46862 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47245 * 300.00125 * 1 2 3 27 27 H 1.08997 * 109.47050 * 60.00830 * 1 2 3 28 28 H 1.09002 * 110.94176 * 25.44860 * 6 4 2 29 29 H 1.08997 * 110.93460 * 261.79771 * 6 4 2 30 30 H 1.08000 * 120.01235 * 0.40729 * 8 7 6 31 31 H 1.07998 * 120.12029 * 180.02562 * 9 8 7 32 32 H 1.07991 * 119.82735 * 179.83065 * 10 9 8 33 33 H 1.08001 * 119.87563 * 180.02562 * 11 10 9 34 34 H 1.09003 * 109.46659 * 60.00335 * 15 14 2 35 35 H 1.09000 * 109.47091 * 179.97438 * 15 14 2 36 36 H 1.08999 * 109.47334 * 299.99850 * 15 14 2 37 37 H 1.08999 * 109.46580 * 289.99639 * 16 14 2 38 38 H 1.08992 * 109.46812 * 49.99547 * 16 14 2 39 39 H 0.96993 * 120.00135 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7211 1.2494 5 1 3.1196 -0.8633 1.2008 6 6 1.6462 0.0542 2.5289 7 6 1.3555 -1.0721 3.5017 8 6 1.2221 -1.0987 4.8724 9 6 0.9580 -2.2934 5.5182 10 6 0.8292 -3.4575 4.7830 11 6 0.9589 -3.4324 3.4099 12 6 1.2210 -2.2333 2.7518 13 8 1.3670 -1.9810 1.4220 14 7 2.0197 -0.6925 -1.1993 15 6 1.4344 -2.0356 -1.3076 16 6 1.7530 0.0971 -2.4090 17 6 2.4775 -0.5165 -3.5793 18 1 3.0759 -1.4045 -3.4387 19 6 2.3764 0.0557 -4.8297 20 7 1.6474 1.1368 -5.0011 21 14 3.2739 -0.7053 -6.2804 22 1 4.0191 -1.9069 -5.8265 23 1 2.2897 -1.0966 -7.3214 24 1 4.2268 0.2830 -6.8466 25 1 -0.3633 -1.0278 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5137 -0.8900 28 1 0.7569 0.6611 2.3585 29 1 2.4738 0.6696 2.8816 30 1 1.3233 -0.1873 5.4428 31 1 0.8526 -2.3168 6.5928 32 1 0.6257 -4.3910 5.2863 33 1 0.8565 -4.3461 2.8431 34 1 0.3491 -1.9550 -1.3692 35 1 1.8134 -2.5259 -2.2042 36 1 1.7060 -2.6221 -0.4299 37 1 0.6815 0.1050 -2.6087 38 1 2.1025 1.1187 -2.2604 39 1 1.5759 1.5392 -5.8807 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000134227867.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:24:41 Heat of formation + Delta-G solvation = -16.516270 kcal Electronic energy + Delta-G solvation = -19692.838921 eV Core-core repulsion = 16793.186572 eV Total energy + Delta-G solvation = -2899.652349 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.21370 -39.26924 -37.81225 -34.94127 -33.80979 -31.93157 -30.91075 -29.15906 -28.94330 -27.03396 -25.49790 -23.39503 -22.85827 -22.49960 -20.59340 -18.59904 -18.32868 -17.59874 -17.12340 -16.81786 -16.23397 -15.99576 -15.46544 -15.03471 -14.97215 -14.36447 -14.32785 -14.09048 -13.90177 -13.76973 -13.19845 -13.13162 -12.92397 -12.84840 -12.63709 -12.50832 -12.32076 -12.14658 -12.10950 -11.79208 -11.58270 -11.52806 -11.19270 -10.61631 -9.77975 -9.03339 -8.98980 -8.20827 -6.30273 0.40217 0.48809 1.40227 1.40634 1.54533 2.33651 2.39969 2.82491 3.11112 3.17661 3.46888 3.76842 3.93391 4.04484 4.06509 4.24294 4.29900 4.36949 4.44012 4.58272 4.61410 4.68973 4.70843 4.74593 4.85384 4.91683 5.02161 5.13058 5.14400 5.23532 5.31174 5.35600 5.47775 5.57541 5.60371 5.65527 5.80690 6.05189 6.30016 6.35930 6.62873 6.85944 7.39140 8.90351 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.047161 B = 0.004143 C = 0.003963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 593.568198 B = 6757.301662 C = 7063.639643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.082 3.918 3 H 0.095 0.905 4 C 0.098 3.902 5 H 0.086 0.914 6 C -0.099 4.099 7 C -0.185 4.185 8 C -0.077 4.077 9 C -0.152 4.152 10 C -0.087 4.087 11 C -0.159 4.159 12 C 0.075 3.925 13 O -0.310 6.310 14 N -0.540 5.540 15 C 0.043 3.957 16 C 0.209 3.791 17 C -0.524 4.524 18 H 0.060 0.940 19 C 0.002 3.998 20 N -0.933 5.933 21 Si 0.968 3.032 22 H -0.265 1.265 23 H -0.279 1.279 24 H -0.276 1.276 25 H 0.055 0.945 26 H 0.077 0.923 27 H 0.038 0.962 28 H 0.098 0.902 29 H 0.110 0.890 30 H 0.146 0.854 31 H 0.156 0.844 32 H 0.156 0.844 33 H 0.127 0.873 34 H 0.011 0.989 35 H 0.049 0.951 36 H 0.080 0.920 37 H -0.033 1.033 38 H 0.006 0.994 39 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.578 -5.192 21.497 22.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.027 4.027 3 H 0.113 0.887 4 C 0.042 3.958 5 H 0.104 0.896 6 C -0.136 4.136 7 C -0.186 4.186 8 C -0.095 4.095 9 C -0.170 4.170 10 C -0.105 4.105 11 C -0.178 4.178 12 C 0.030 3.970 13 O -0.225 6.225 14 N -0.263 5.263 15 C -0.105 4.105 16 C 0.083 3.917 17 C -0.563 4.563 18 H 0.078 0.922 19 C -0.196 4.196 20 N -0.574 5.574 21 Si 0.793 3.207 22 H -0.189 1.189 23 H -0.204 1.204 24 H -0.202 1.202 25 H 0.074 0.926 26 H 0.096 0.904 27 H 0.057 0.943 28 H 0.116 0.884 29 H 0.129 0.871 30 H 0.163 0.837 31 H 0.173 0.827 32 H 0.173 0.827 33 H 0.145 0.855 34 H 0.030 0.970 35 H 0.068 0.932 36 H 0.099 0.901 37 H -0.015 1.015 38 H 0.024 0.976 39 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -1.174 -5.248 21.193 21.865 hybrid contribution -0.601 0.120 -1.421 1.547 sum -1.775 -5.128 19.773 20.504 Atomic orbital electron populations 1.22282 0.97035 1.02076 1.01663 1.21871 0.93690 0.97766 0.89404 0.88670 1.23381 0.96604 0.81187 0.94652 0.89599 1.21855 1.04017 0.96692 0.91049 1.21009 1.07660 0.94349 0.95549 1.20662 0.97485 0.99783 0.91527 1.21413 1.02369 0.91849 1.01350 1.21220 0.97352 1.00077 0.91856 1.20561 1.06808 0.95213 0.95218 1.20124 0.97503 0.95524 0.83866 1.86972 1.74387 1.40367 1.20791 1.62252 1.57939 1.03446 1.02710 1.22267 0.95929 0.90828 1.01462 1.19368 0.92912 0.92412 0.87010 1.21515 1.29401 1.11986 0.93364 0.92209 1.25886 0.96342 0.95459 1.01882 1.70084 1.41386 1.21860 1.24083 0.85348 0.78298 0.78584 0.78469 1.18946 1.20437 1.20196 0.92559 0.90377 0.94315 0.88416 0.87128 0.83658 0.82680 0.82658 0.85465 0.97025 0.93241 0.90121 1.01510 0.97556 0.92685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.94 8.00 71.98 0.58 -5.37 16 2 C 0.08 2.93 2.39 44.92 0.11 3.04 16 3 H 0.10 3.33 7.93 -2.39 -0.02 3.31 16 4 C 0.10 2.96 3.35 31.18 0.10 3.07 16 5 H 0.09 2.68 8.14 -2.39 -0.02 2.66 16 6 C -0.10 -2.29 6.49 30.73 0.20 -2.10 16 7 C -0.18 -4.42 6.27 -19.53 -0.12 -4.54 16 8 C -0.08 -1.42 10.03 22.18 0.22 -1.19 16 9 C -0.15 -2.42 10.07 22.31 0.22 -2.19 16 10 C -0.09 -1.53 10.02 22.21 0.22 -1.30 16 11 C -0.16 -3.75 10.06 22.45 0.23 -3.52 16 12 C 0.07 2.09 7.04 22.67 0.16 2.25 16 13 O -0.31 -10.07 6.93 -95.18 -0.66 -10.73 16 14 N -0.54 -24.21 4.70 -901.63 -4.24 -28.45 16 15 C 0.04 1.84 8.30 127.69 1.06 2.90 16 16 C 0.21 11.34 4.29 85.55 0.37 11.71 16 17 C -0.52 -30.46 8.46 25.60 0.22 -30.25 16 18 H 0.06 3.45 7.12 -2.91 -0.02 3.43 16 19 C 0.00 0.13 5.46 84.65 0.46 0.59 16 20 N -0.93 -56.72 13.29 21.45 0.28 -56.44 16 21 Si 0.97 45.09 29.54 68.60 2.03 47.12 16 22 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 23 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 24 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 25 H 0.06 2.03 5.68 -2.38 -0.01 2.02 16 26 H 0.08 2.21 6.41 -2.39 -0.02 2.19 16 27 H 0.04 1.50 6.91 -2.39 -0.02 1.49 16 28 H 0.10 2.15 6.19 -2.39 -0.01 2.14 16 29 H 0.11 2.07 8.14 -2.39 -0.02 2.05 16 30 H 0.15 1.91 8.06 -2.91 -0.02 1.89 16 31 H 0.16 1.47 8.06 -2.91 -0.02 1.44 16 32 H 0.16 1.74 8.06 -2.92 -0.02 1.71 16 33 H 0.13 2.79 8.06 -2.91 -0.02 2.77 16 34 H 0.01 0.49 6.21 -2.39 -0.01 0.47 16 35 H 0.05 2.26 6.76 -2.39 -0.02 2.24 16 36 H 0.08 3.15 5.50 -2.39 -0.01 3.14 16 37 H -0.03 -1.92 7.06 -2.39 -0.02 -1.94 16 38 H 0.01 0.37 7.93 -2.39 -0.02 0.35 16 39 H 0.26 15.04 8.31 -92.71 -0.77 14.27 16 Total: -1.00 -67.18 306.54 2.48 -64.71 By element: Atomic # 1 Polarization: 9.65 SS G_CDS: 1.04 Total: 10.69 kcal Atomic # 6 Polarization: -30.93 SS G_CDS: 4.03 Total: -26.90 kcal Atomic # 7 Polarization: -80.93 SS G_CDS: -3.95 Total: -84.89 kcal Atomic # 8 Polarization: -10.07 SS G_CDS: -0.66 Total: -10.73 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 2.03 Total: 47.12 kcal Total: -67.18 2.48 -64.71 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000134227867.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.194 kcal (2) G-P(sol) polarization free energy of solvation -67.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.710 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds