Wall clock time and date at job start Mon Mar 30 2020 06:11:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 110.67378 * 2 1 4 4 O 1.44372 * 110.61701 * 237.03512 * 2 1 3 5 5 C 1.43745 * 106.97310 * 201.43883 * 4 2 1 6 6 C 1.54100 * 107.29609 * 26.51368 * 5 4 2 7 7 C 1.54816 * 104.18434 * 357.96801 * 6 5 4 8 8 H 1.09007 * 110.90299 * 97.35732 * 7 6 5 9 9 N 1.46901 * 110.90567 * 220.91816 * 7 6 5 10 10 C 1.46892 * 111.00416 * 273.54746 * 9 7 6 11 11 H 1.09003 * 109.47480 * 325.00502 * 10 9 7 12 12 C 1.50704 * 109.47032 * 85.00320 * 10 9 7 13 13 H 1.08003 * 119.99474 * 33.49780 * 12 10 9 14 14 C 1.37870 * 120.00200 * 213.50285 * 12 10 9 15 15 N 1.31516 * 120.00105 * 352.93628 * 14 12 10 16 16 Si 1.86801 * 120.00171 * 172.93674 * 14 12 10 17 17 H 1.48493 * 109.47162 * 59.99924 * 16 14 12 18 18 H 1.48498 * 109.47299 * 180.02562 * 16 14 12 19 19 H 1.48506 * 109.47076 * 299.99814 * 16 14 12 20 20 C 1.50696 * 109.47469 * 205.00198 * 10 9 7 21 21 C 1.38239 * 119.99841 * 313.66869 * 20 10 9 22 22 C 1.38233 * 119.99741 * 179.78314 * 21 20 10 23 23 C 1.38237 * 120.00016 * 0.47020 * 22 21 20 24 24 C 1.38230 * 119.99993 * 359.75852 * 23 22 21 25 25 C 1.38228 * 120.00368 * 0.03046 * 24 23 22 26 26 H 1.08998 * 109.47398 * 297.03539 * 1 2 3 27 27 H 1.08998 * 109.47042 * 57.03805 * 1 2 3 28 28 H 1.09005 * 109.47242 * 177.03698 * 1 2 3 29 29 H 1.09002 * 109.88015 * 267.09008 * 5 4 2 30 30 H 1.09003 * 109.88059 * 145.93733 * 5 4 2 31 31 H 1.09004 * 110.48567 * 239.30081 * 6 5 4 32 32 H 1.08995 * 110.48826 * 116.65125 * 6 5 4 33 33 H 1.00908 * 110.99065 * 149.59247 * 9 7 6 34 34 H 0.96999 * 120.00180 * 4.51576 * 15 14 12 35 35 H 1.07998 * 119.99770 * 359.97438 * 21 20 10 36 36 H 1.08003 * 119.99937 * 180.24984 * 22 21 20 37 37 H 1.08001 * 120.00092 * 179.79210 * 23 22 21 38 38 H 1.08004 * 119.99847 * 180.02562 * 24 23 22 39 39 H 1.07995 * 120.00843 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9148 1.0198 0.0000 4 8 2.0384 -0.7353 -1.1337 5 6 3.3839 -1.1254 -0.8117 6 6 3.4795 -1.2167 0.7236 7 6 2.0758 -0.7892 1.2172 8 1 1.4551 -1.6606 1.4266 9 7 2.1770 0.0756 2.4003 10 6 2.2471 -0.7226 3.6315 11 1 1.6299 -1.6143 3.5221 12 6 3.6758 -1.1287 3.8862 13 1 4.4831 -0.4683 3.6057 14 6 3.9524 -2.3432 4.4772 15 7 2.9725 -3.0854 4.9446 16 14 5.7190 -2.9346 4.6141 17 1 6.5068 -1.9602 5.4110 18 1 5.7470 -4.2598 5.2836 19 1 6.3077 -3.0542 3.2560 20 6 1.7436 0.0975 4.7912 21 6 2.1763 1.4001 4.9561 22 6 1.7111 2.1538 6.0173 23 6 0.8207 1.6018 6.9193 24 6 0.3917 0.2978 6.7571 25 6 0.8535 -0.4545 5.6934 26 1 -0.3634 0.4671 0.9153 27 1 -0.3633 0.5591 -0.8622 28 1 -0.3634 -1.0263 -0.0531 29 1 4.0854 -0.3782 -1.1829 30 1 3.6045 -2.0964 -1.2552 31 1 4.2406 -0.5330 1.0998 32 1 3.6975 -2.2391 1.0321 33 1 1.4096 0.7298 2.4366 34 1 2.0514 -2.8100 4.8155 35 1 2.8754 1.8298 4.2539 36 1 2.0460 3.1727 6.1439 37 1 0.4598 2.1896 7.7503 38 1 -0.3043 -0.1333 7.4615 39 1 0.5187 -1.4734 5.5668 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000149689849.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:11:40 Heat of formation + Delta-G solvation = -26.915055 kcal Electronic energy + Delta-G solvation = -20067.189536 eV Core-core repulsion = 17167.086262 eV Total energy + Delta-G solvation = -2900.103274 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.31625 -38.47061 -35.40587 -32.82553 -31.24362 -30.93594 -30.14552 -28.94017 -26.00553 -24.66602 -22.80112 -21.75644 -21.37143 -20.22744 -19.96238 -17.05396 -16.23547 -15.97382 -15.43893 -15.04096 -14.60656 -14.34349 -13.79793 -13.69177 -13.49119 -13.03559 -12.78666 -12.52038 -12.30192 -12.15131 -11.89414 -11.68645 -11.34652 -11.12316 -10.90196 -10.72607 -10.47709 -10.27695 -10.22157 -9.98498 -9.94451 -9.31503 -9.13691 -8.51245 -8.19196 -7.80666 -7.50065 -6.42244 -4.13182 2.13567 2.16836 3.39504 3.40034 3.58761 4.13011 4.43743 4.55366 4.91611 5.11831 5.18301 5.31079 5.43683 5.50174 5.54884 5.60252 5.68197 5.69868 5.76228 5.78909 6.04993 6.09586 6.16091 6.21488 6.30286 6.34198 6.37389 6.63350 6.66649 6.75672 6.83106 6.90435 7.17507 7.19604 7.21370 7.50747 7.72868 7.88320 7.93794 8.34293 8.52678 8.79558 9.54774 10.92100 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.013447 B = 0.008894 C = 0.006004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2081.718400 B = 3147.465489 C = 4662.525131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.069 3.931 3 H 0.074 0.926 4 O -0.383 6.383 5 C 0.046 3.954 6 C -0.131 4.131 7 C 0.077 3.923 8 H 0.048 0.952 9 N -0.667 5.667 10 C 0.231 3.769 11 H 0.019 0.981 12 C -0.559 4.559 13 H 0.059 0.941 14 C 0.020 3.980 15 N -0.905 5.905 16 Si 1.065 2.935 17 H -0.288 1.288 18 H -0.284 1.284 19 H -0.286 1.286 20 C -0.044 4.044 21 C -0.106 4.106 22 C -0.131 4.131 23 C -0.150 4.150 24 C -0.125 4.125 25 C -0.123 4.123 26 H 0.068 0.932 27 H 0.059 0.941 28 H 0.061 0.939 29 H 0.052 0.948 30 H 0.076 0.924 31 H 0.089 0.911 32 H 0.074 0.926 33 H 0.316 0.684 34 H 0.268 0.732 35 H 0.121 0.879 36 H 0.108 0.892 37 H 0.107 0.893 38 H 0.108 0.892 39 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.472 6.340 -4.598 8.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.011 3.989 3 H 0.091 0.909 4 O -0.302 6.302 5 C -0.031 4.031 6 C -0.170 4.170 7 C -0.033 4.033 8 H 0.066 0.934 9 N -0.298 5.298 10 C 0.124 3.876 11 H 0.036 0.964 12 C -0.597 4.597 13 H 0.077 0.923 14 C -0.185 4.185 15 N -0.541 5.541 16 Si 0.893 3.107 17 H -0.214 1.214 18 H -0.209 1.209 19 H -0.213 1.213 20 C -0.046 4.046 21 C -0.124 4.124 22 C -0.149 4.149 23 C -0.168 4.168 24 C -0.143 4.143 25 C -0.142 4.142 26 H 0.087 0.913 27 H 0.078 0.922 28 H 0.080 0.920 29 H 0.071 0.929 30 H 0.094 0.906 31 H 0.107 0.893 32 H 0.093 0.907 33 H 0.134 0.866 34 H 0.080 0.920 35 H 0.139 0.861 36 H 0.126 0.874 37 H 0.125 0.875 38 H 0.126 0.874 39 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -1.951 5.115 -4.259 6.936 hybrid contribution -1.604 0.884 -0.078 1.833 sum -3.554 5.999 -4.337 8.212 Atomic orbital electron populations 1.21779 0.93841 1.02660 1.01990 1.23250 0.94356 0.95804 0.85519 0.90851 1.88793 1.28472 1.73833 1.39080 1.23220 0.83883 0.99443 0.96598 1.22823 0.98508 1.03363 0.92263 1.22851 0.95716 0.94485 0.90291 0.93385 1.60815 1.47975 1.18859 1.02183 1.18502 0.97402 0.89073 0.82612 0.96382 1.21737 0.90413 1.04389 1.43155 0.92281 1.25829 1.05892 0.93687 0.93101 1.70836 1.00678 1.41911 1.40684 0.83586 0.74205 0.76350 0.76540 1.21399 1.20895 1.21275 1.20753 0.91580 0.93629 0.98615 1.20937 0.99454 0.94307 0.97695 1.21031 0.98678 0.99311 0.95861 1.20849 1.00379 0.95783 0.99818 1.20959 1.00691 0.94623 0.98040 1.21027 0.98199 0.99320 0.95619 0.91345 0.92168 0.92013 0.92948 0.90597 0.89285 0.90736 0.86635 0.91962 0.86146 0.87361 0.87515 0.87383 0.87043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.99 9.66 37.16 0.36 -1.63 16 2 C 0.07 1.09 3.43 -25.68 -0.09 1.00 16 3 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 4 O -0.38 -6.50 11.22 -35.23 -0.40 -6.90 16 5 C 0.05 0.72 7.70 37.73 0.29 1.01 16 6 C -0.13 -2.42 5.79 -25.20 -0.15 -2.56 16 7 C 0.08 1.44 2.83 -65.70 -0.19 1.25 16 8 H 0.05 0.98 7.47 -51.93 -0.39 0.60 16 9 N -0.67 -13.09 5.71 -100.08 -0.57 -13.66 16 10 C 0.23 5.31 2.01 -70.02 -0.14 5.17 16 11 H 0.02 0.47 5.71 -51.93 -0.30 0.17 16 12 C -0.56 -14.37 7.53 -34.44 -0.26 -14.63 16 13 H 0.06 1.57 7.82 -52.48 -0.41 1.16 16 14 C 0.02 0.54 5.45 -17.82 -0.10 0.44 16 15 N -0.90 -25.71 13.62 55.43 0.76 -24.96 16 16 Si 1.06 24.38 29.91 -169.99 -5.08 19.29 16 17 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 18 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 19 H -0.29 -6.22 7.11 56.52 0.40 -5.82 16 20 C -0.04 -0.96 4.64 -104.62 -0.49 -1.45 16 21 C -0.11 -2.10 9.08 -39.58 -0.36 -2.46 16 22 C -0.13 -2.30 10.05 -39.58 -0.40 -2.70 16 23 C -0.15 -2.56 10.05 -39.58 -0.40 -2.96 16 24 C -0.12 -2.29 10.05 -39.59 -0.40 -2.69 16 25 C -0.12 -2.58 9.40 -39.58 -0.37 -2.95 16 26 H 0.07 0.87 7.96 -51.93 -0.41 0.46 16 27 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.08 1.09 8.14 -51.93 -0.42 0.66 16 31 H 0.09 1.73 8.06 -51.93 -0.42 1.32 16 32 H 0.07 1.48 8.14 -51.93 -0.42 1.06 16 33 H 0.32 5.70 7.76 -39.29 -0.30 5.39 16 34 H 0.27 7.52 5.55 -40.82 -0.23 7.29 16 35 H 0.12 2.37 7.92 -52.49 -0.42 1.96 16 36 H 0.11 1.60 8.06 -52.48 -0.42 1.18 16 37 H 0.11 1.51 8.06 -52.49 -0.42 1.09 16 38 H 0.11 1.70 8.06 -52.48 -0.42 1.28 16 39 H 0.11 2.39 7.21 -52.49 -0.38 2.02 16 LS Contribution 317.93 15.07 4.79 4.79 Total: -1.00 -28.15 317.93 -9.04 -37.18 By element: Atomic # 1 Polarization: 15.25 SS G_CDS: -5.85 Total: 9.40 kcal Atomic # 6 Polarization: -22.47 SS G_CDS: -2.68 Total: -25.15 kcal Atomic # 7 Polarization: -38.80 SS G_CDS: 0.18 Total: -38.62 kcal Atomic # 8 Polarization: -6.50 SS G_CDS: -0.40 Total: -6.90 kcal Atomic # 14 Polarization: 24.38 SS G_CDS: -5.08 Total: 19.29 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -28.15 -9.04 -37.18 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000149689849.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.269 kcal (2) G-P(sol) polarization free energy of solvation -28.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds