Wall clock time and date at job start Mon Mar 30 2020 06:11:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 110.67378 * 2 1 4 4 O 1.44372 * 110.61701 * 237.03512 * 2 1 3 5 5 C 1.43745 * 106.97310 * 201.43883 * 4 2 1 6 6 C 1.54100 * 107.29609 * 26.51368 * 5 4 2 7 7 C 1.54816 * 104.18434 * 357.96801 * 6 5 4 8 8 H 1.09007 * 110.90299 * 97.35732 * 7 6 5 9 9 N 1.46901 * 110.90567 * 220.91816 * 7 6 5 10 10 C 1.46892 * 111.00416 * 273.54746 * 9 7 6 11 11 H 1.09003 * 109.47480 * 325.00502 * 10 9 7 12 12 C 1.50704 * 109.47032 * 85.00320 * 10 9 7 13 13 H 1.08003 * 119.99474 * 33.49780 * 12 10 9 14 14 C 1.37870 * 120.00200 * 213.50285 * 12 10 9 15 15 N 1.31516 * 120.00105 * 352.93628 * 14 12 10 16 16 Si 1.86801 * 120.00171 * 172.93674 * 14 12 10 17 17 H 1.48493 * 109.47162 * 59.99924 * 16 14 12 18 18 H 1.48498 * 109.47299 * 180.02562 * 16 14 12 19 19 H 1.48506 * 109.47076 * 299.99814 * 16 14 12 20 20 C 1.50696 * 109.47469 * 205.00198 * 10 9 7 21 21 C 1.38239 * 119.99841 * 313.66869 * 20 10 9 22 22 C 1.38233 * 119.99741 * 179.78314 * 21 20 10 23 23 C 1.38237 * 120.00016 * 0.47020 * 22 21 20 24 24 C 1.38230 * 119.99993 * 359.75852 * 23 22 21 25 25 C 1.38228 * 120.00368 * 0.03046 * 24 23 22 26 26 H 1.08998 * 109.47398 * 297.03539 * 1 2 3 27 27 H 1.08998 * 109.47042 * 57.03805 * 1 2 3 28 28 H 1.09005 * 109.47242 * 177.03698 * 1 2 3 29 29 H 1.09002 * 109.88015 * 267.09008 * 5 4 2 30 30 H 1.09003 * 109.88059 * 145.93733 * 5 4 2 31 31 H 1.09004 * 110.48567 * 239.30081 * 6 5 4 32 32 H 1.08995 * 110.48826 * 116.65125 * 6 5 4 33 33 H 1.00908 * 110.99065 * 149.59247 * 9 7 6 34 34 H 0.96999 * 120.00180 * 4.51576 * 15 14 12 35 35 H 1.07998 * 119.99770 * 359.97438 * 21 20 10 36 36 H 1.08003 * 119.99937 * 180.24984 * 22 21 20 37 37 H 1.08001 * 120.00092 * 179.79210 * 23 22 21 38 38 H 1.08004 * 119.99847 * 180.02562 * 24 23 22 39 39 H 1.07995 * 120.00843 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9148 1.0198 0.0000 4 8 2.0384 -0.7353 -1.1337 5 6 3.3839 -1.1254 -0.8117 6 6 3.4795 -1.2167 0.7236 7 6 2.0758 -0.7892 1.2172 8 1 1.4551 -1.6606 1.4266 9 7 2.1770 0.0756 2.4003 10 6 2.2471 -0.7226 3.6315 11 1 1.6299 -1.6143 3.5221 12 6 3.6758 -1.1287 3.8862 13 1 4.4831 -0.4683 3.6057 14 6 3.9524 -2.3432 4.4772 15 7 2.9725 -3.0854 4.9446 16 14 5.7190 -2.9346 4.6141 17 1 6.5068 -1.9602 5.4110 18 1 5.7470 -4.2598 5.2836 19 1 6.3077 -3.0542 3.2560 20 6 1.7436 0.0975 4.7912 21 6 2.1763 1.4001 4.9561 22 6 1.7111 2.1538 6.0173 23 6 0.8207 1.6018 6.9193 24 6 0.3917 0.2978 6.7571 25 6 0.8535 -0.4545 5.6934 26 1 -0.3634 0.4671 0.9153 27 1 -0.3633 0.5591 -0.8622 28 1 -0.3634 -1.0263 -0.0531 29 1 4.0854 -0.3782 -1.1829 30 1 3.6045 -2.0964 -1.2552 31 1 4.2406 -0.5330 1.0998 32 1 3.6975 -2.2391 1.0321 33 1 1.4096 0.7298 2.4366 34 1 2.0514 -2.8100 4.8155 35 1 2.8754 1.8298 4.2539 36 1 2.0460 3.1727 6.1439 37 1 0.4598 2.1896 7.7503 38 1 -0.3043 -0.1333 7.4615 39 1 0.5187 -1.4734 5.5668 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000149689849.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:11:40 Heat of formation + Delta-G solvation = -43.561621 kcal Electronic energy + Delta-G solvation = -20067.911385 eV Core-core repulsion = 17167.086262 eV Total energy + Delta-G solvation = -2900.825123 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.76249 -39.96264 -37.04347 -34.63093 -32.69595 -32.39943 -31.64201 -30.41851 -27.76533 -26.17979 -24.51757 -23.26223 -22.75686 -21.77535 -21.51919 -18.91628 -17.76144 -17.42401 -16.85211 -16.50302 -16.16524 -15.81004 -15.65896 -15.22142 -14.95240 -14.63640 -14.28627 -14.05841 -13.82160 -13.38739 -13.29259 -13.15066 -12.99612 -12.71328 -12.63406 -12.12987 -12.03189 -11.96861 -11.82111 -11.63392 -11.43348 -11.01795 -10.64104 -10.49466 -9.68967 -9.39075 -9.26953 -8.50504 -6.23572 0.62626 0.66674 1.51103 1.57502 1.75739 2.54844 2.80558 3.01829 3.25863 3.38603 3.74715 3.84988 4.07306 4.13518 4.19448 4.22830 4.30333 4.36116 4.41314 4.45155 4.63613 4.67464 4.76265 4.83909 4.87861 4.94134 4.98218 5.13512 5.17569 5.22789 5.29624 5.32020 5.69554 5.71149 5.80785 5.95560 5.97418 6.08931 6.29184 6.48471 6.58709 6.85324 7.51620 8.82002 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.013447 B = 0.008894 C = 0.006004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2081.718400 B = 3147.465489 C = 4662.525131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.078 3.922 3 H 0.085 0.915 4 O -0.391 6.391 5 C 0.052 3.948 6 C -0.131 4.131 7 C 0.072 3.928 8 H 0.021 0.979 9 N -0.659 5.659 10 C 0.240 3.760 11 H -0.018 1.018 12 C -0.554 4.554 13 H 0.047 0.953 14 C -0.028 4.028 15 N -0.937 5.937 16 Si 1.102 2.898 17 H -0.276 1.276 18 H -0.290 1.290 19 H -0.270 1.270 20 C -0.070 4.070 21 C -0.117 4.117 22 C -0.124 4.124 23 C -0.139 4.139 24 C -0.127 4.127 25 C -0.146 4.146 26 H 0.075 0.925 27 H 0.082 0.918 28 H 0.053 0.947 29 H 0.074 0.926 30 H 0.091 0.909 31 H 0.077 0.923 32 H 0.049 0.951 33 H 0.327 0.673 34 H 0.258 0.742 35 H 0.118 0.882 36 H 0.145 0.855 37 H 0.148 0.852 38 H 0.133 0.867 39 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.481 8.768 -4.495 10.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.020 3.980 3 H 0.102 0.898 4 O -0.310 6.310 5 C -0.025 4.025 6 C -0.169 4.169 7 C -0.038 4.038 8 H 0.039 0.961 9 N -0.290 5.290 10 C 0.132 3.868 11 H -0.001 1.001 12 C -0.593 4.593 13 H 0.066 0.934 14 C -0.227 4.227 15 N -0.575 5.575 16 Si 0.926 3.074 17 H -0.201 1.201 18 H -0.216 1.216 19 H -0.195 1.195 20 C -0.071 4.071 21 C -0.135 4.135 22 C -0.142 4.142 23 C -0.157 4.157 24 C -0.144 4.144 25 C -0.165 4.165 26 H 0.094 0.906 27 H 0.100 0.900 28 H 0.072 0.928 29 H 0.093 0.907 30 H 0.109 0.891 31 H 0.096 0.904 32 H 0.068 0.932 33 H 0.145 0.855 34 H 0.069 0.931 35 H 0.136 0.864 36 H 0.163 0.837 37 H 0.166 0.834 38 H 0.151 0.849 39 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -1.966 7.570 -4.175 8.866 hybrid contribution -1.671 0.220 -0.089 1.688 sum -3.638 7.790 -4.264 9.597 Atomic orbital electron populations 1.21786 0.92072 1.02693 1.03400 1.23247 0.95743 0.95465 0.83556 0.89756 1.88786 1.28993 1.74073 1.39186 1.23244 0.83953 1.01112 0.94165 1.22740 0.97977 1.01426 0.94768 1.22882 0.95767 0.94053 0.91147 0.96143 1.60684 1.48394 1.18537 1.01400 1.18226 0.95392 0.88587 0.84589 1.00072 1.21874 0.91531 1.03935 1.41973 0.93422 1.26954 1.08349 0.94307 0.93056 1.70920 1.00598 1.42878 1.43116 0.83107 0.71084 0.75788 0.77433 1.20129 1.21574 1.19485 1.20622 0.93350 0.94762 0.98350 1.20996 0.99825 0.93730 0.98944 1.21431 0.97678 1.00599 0.94448 1.21326 0.98914 0.95199 1.00274 1.21277 1.00652 0.95232 0.97284 1.21039 0.99396 0.98942 0.97161 0.90596 0.89956 0.92817 0.90744 0.89102 0.90439 0.93225 0.85457 0.93055 0.86399 0.83744 0.83398 0.84886 0.89223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.72 9.66 71.98 0.70 -3.02 16 2 C 0.08 2.40 3.43 31.28 0.11 2.51 16 3 H 0.08 2.46 8.14 -2.39 -0.02 2.44 16 4 O -0.39 -12.74 11.22 -148.98 -1.67 -14.41 16 5 C 0.05 1.58 7.70 72.35 0.56 2.13 16 6 C -0.13 -4.92 5.79 31.59 0.18 -4.74 16 7 C 0.07 2.76 2.83 46.22 0.13 2.90 16 8 H 0.02 0.90 7.47 -2.38 -0.02 0.88 16 9 N -0.66 -26.50 5.71 -470.53 -2.69 -29.19 16 10 C 0.24 11.53 2.01 43.42 0.09 11.62 16 11 H -0.02 -1.00 5.71 -2.39 -0.01 -1.02 16 12 C -0.55 -29.55 7.53 25.60 0.19 -29.36 16 13 H 0.05 2.60 7.82 -2.91 -0.02 2.57 16 14 C -0.03 -1.53 5.45 84.65 0.46 -1.07 16 15 N -0.94 -55.81 13.62 21.44 0.29 -55.51 16 16 Si 1.10 50.09 29.91 68.60 2.05 52.14 16 17 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 18 H -0.29 -13.39 7.11 99.48 0.71 -12.69 16 19 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 20 C -0.07 -3.08 4.64 -19.86 -0.09 -3.18 16 21 C -0.12 -4.52 9.08 22.27 0.20 -4.32 16 22 C -0.12 -3.94 10.05 22.27 0.22 -3.71 16 23 C -0.14 -4.22 10.05 22.27 0.22 -4.00 16 24 C -0.13 -4.41 10.05 22.27 0.22 -4.19 16 25 C -0.15 -6.28 9.40 22.27 0.21 -6.08 16 26 H 0.08 1.86 7.96 -2.39 -0.02 1.84 16 27 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 28 H 0.05 1.48 8.14 -2.38 -0.02 1.46 16 29 H 0.07 1.96 8.14 -2.39 -0.02 1.95 16 30 H 0.09 2.49 8.14 -2.39 -0.02 2.47 16 31 H 0.08 3.07 8.06 -2.38 -0.02 3.05 16 32 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 33 H 0.33 11.88 7.76 -89.69 -0.70 11.18 16 34 H 0.26 15.48 5.55 -92.71 -0.51 14.96 16 35 H 0.12 4.55 7.92 -2.91 -0.02 4.53 16 36 H 0.14 3.55 8.06 -2.91 -0.02 3.53 16 37 H 0.15 3.32 8.06 -2.91 -0.02 3.30 16 38 H 0.13 3.89 8.06 -2.91 -0.02 3.86 16 39 H 0.09 4.13 7.21 -2.91 -0.02 4.11 16 Total: -1.00 -63.03 317.93 1.98 -61.05 By element: Atomic # 1 Polarization: 29.84 SS G_CDS: 0.59 Total: 30.43 kcal Atomic # 6 Polarization: -47.91 SS G_CDS: 3.40 Total: -44.51 kcal Atomic # 7 Polarization: -82.31 SS G_CDS: -2.39 Total: -84.70 kcal Atomic # 8 Polarization: -12.74 SS G_CDS: -1.67 Total: -14.41 kcal Atomic # 14 Polarization: 50.09 SS G_CDS: 2.05 Total: 52.14 kcal Total: -63.03 1.98 -61.05 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000149689849.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.489 kcal (2) G-P(sol) polarization free energy of solvation -63.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.050 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds