Wall clock time and date at job start Mon Mar 30 2020 06:11:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09003 * 110.33367 * 2 1 4 4 O 1.44430 * 110.37325 * 237.75376 * 2 1 3 5 5 C 1.44422 * 105.27596 * 200.54752 * 4 2 1 6 6 C 1.54478 * 104.80241 * 40.50902 * 5 4 2 7 7 C 1.54478 * 110.46307 * 122.31814 * 2 1 3 8 8 H 1.09005 * 110.50952 * 261.49571 * 7 2 1 9 9 N 1.46895 * 110.51385 * 24.21397 * 7 2 1 10 10 C 1.46901 * 110.99954 * 195.67462 * 9 7 2 11 11 H 1.09003 * 109.46866 * 324.99309 * 10 9 7 12 12 C 1.50702 * 109.47565 * 84.99608 * 10 9 7 13 13 H 1.08001 * 119.99799 * 34.49081 * 12 10 9 14 14 C 1.37873 * 119.99993 * 214.49542 * 12 10 9 15 15 N 1.31515 * 120.00304 * 5.31122 * 14 12 10 16 16 Si 1.86800 * 119.99542 * 185.30898 * 14 12 10 17 17 H 1.48505 * 109.47080 * 90.00532 * 16 14 12 18 18 H 1.48507 * 109.47248 * 209.99921 * 16 14 12 19 19 H 1.48500 * 109.47572 * 329.99907 * 16 14 12 20 20 C 1.50699 * 109.47111 * 204.99624 * 10 9 7 21 21 C 1.38236 * 119.99986 * 313.86239 * 20 10 9 22 22 C 1.38240 * 119.99615 * 179.78392 * 21 20 10 23 23 C 1.38234 * 120.00287 * 0.44431 * 22 21 20 24 24 C 1.38235 * 119.99824 * 359.80733 * 23 22 21 25 25 C 1.38234 * 120.00170 * 359.97438 * 24 23 22 26 26 H 1.08998 * 109.47270 * 175.69078 * 1 2 3 27 27 H 1.08997 * 109.46858 * 295.69537 * 1 2 3 28 28 H 1.09002 * 109.46960 * 55.69630 * 1 2 3 29 29 H 1.08996 * 110.37056 * 159.34102 * 5 4 2 30 30 H 1.08999 * 110.37167 * 281.68338 * 5 4 2 31 31 H 1.09006 * 110.51171 * 94.66565 * 6 5 4 32 32 H 1.09004 * 110.51323 * 217.37654 * 6 5 4 33 33 H 1.00901 * 110.99772 * 319.62333 * 9 7 2 34 34 H 0.97000 * 120.00021 * 180.02562 * 15 14 12 35 35 H 1.07994 * 119.99612 * 359.97438 * 21 20 10 36 36 H 1.08000 * 119.99555 * 180.27133 * 22 21 20 37 37 H 1.07999 * 120.00007 * 179.82827 * 23 22 21 38 38 H 1.08002 * 119.99829 * 180.02562 * 24 23 22 39 39 H 1.07998 * 120.00223 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9088 1.0221 0.0000 4 8 2.0328 -0.7224 -1.1451 5 6 3.3883 -1.0840 -0.8018 6 6 3.3207 -1.5032 0.6835 7 6 2.0701 -0.7738 1.2231 8 1 2.3451 -0.0835 2.0207 9 7 1.0745 -1.7430 1.6997 10 6 1.4030 -2.2133 3.0521 11 1 2.4857 -2.2780 3.1612 12 6 0.8527 -1.2459 4.0681 13 1 -0.0803 -0.7360 3.8781 14 6 1.5402 -1.0117 5.2400 15 7 2.7253 -1.5506 5.4261 16 14 0.7882 0.0713 6.5633 17 1 -0.0130 -0.7660 7.4920 18 1 1.8699 0.7525 7.3193 19 1 -0.0898 1.0883 5.9310 20 6 0.7938 -3.5739 3.2725 21 6 -0.5191 -3.8103 2.9100 22 6 -1.0766 -5.0597 3.1081 23 6 -0.3241 -6.0700 3.6773 24 6 0.9872 -5.8321 4.0446 25 6 1.5461 -4.5841 3.8423 26 1 -0.3634 -1.0247 -0.0772 27 1 -0.3633 0.4456 0.9260 28 1 -0.3633 0.5792 -0.8489 29 1 3.7257 -1.9183 -1.4166 30 1 4.0520 -0.2281 -0.9246 31 1 3.2002 -2.5831 0.7704 32 1 4.2139 -1.1737 1.2144 33 1 0.1451 -1.3514 1.6690 34 1 3.2087 -1.3861 6.2508 35 1 -1.1082 -3.0198 2.4691 36 1 -2.1009 -5.2456 2.8208 37 1 -0.7605 -7.0453 3.8346 38 1 1.5752 -6.6216 4.4889 39 1 2.5704 -4.3981 4.1297 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000149690186.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:11:42 Heat of formation + Delta-G solvation = -22.037188 kcal Electronic energy + Delta-G solvation = -20124.956412 eV Core-core repulsion = 17225.064658 eV Total energy + Delta-G solvation = -2899.891754 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.27242 -38.21770 -35.18471 -32.65441 -31.21205 -30.88856 -29.96292 -28.72858 -26.08154 -24.88649 -22.89813 -21.61331 -21.52399 -20.00141 -19.18374 -16.79823 -16.30488 -15.81776 -15.26258 -15.02422 -14.73822 -14.45810 -13.98211 -13.92510 -13.01037 -12.67966 -12.50132 -12.28251 -11.97927 -11.92936 -11.73354 -11.45152 -11.27092 -11.06282 -10.98885 -10.68146 -10.49320 -10.39469 -10.23645 -10.10187 -9.84107 -9.46461 -9.29786 -8.64463 -8.00169 -7.72200 -7.30473 -6.17490 -4.28267 2.33719 2.39905 3.19831 3.27105 3.29035 4.27571 4.30320 4.76135 5.13355 5.17174 5.18602 5.27828 5.47746 5.58175 5.69517 5.75517 5.77753 5.87272 5.91903 5.94336 6.17234 6.21181 6.30347 6.40384 6.46291 6.52545 6.55193 6.66365 6.70929 6.88031 7.04286 7.18670 7.30225 7.35214 7.48428 7.65956 7.74486 7.98434 8.04180 8.14145 8.57999 8.85499 9.38761 10.84213 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.013035 B = 0.008846 C = 0.006439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2147.627716 B = 3164.435814 C = 4347.747285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.073 3.927 3 H 0.061 0.939 4 O -0.374 6.374 5 C 0.049 3.951 6 C -0.143 4.143 7 C 0.071 3.929 8 H 0.062 0.938 9 N -0.678 5.678 10 C 0.225 3.775 11 H 0.076 0.924 12 C -0.540 4.540 13 H 0.056 0.944 14 C 0.076 3.924 15 N -0.880 5.880 16 Si 0.889 3.111 17 H -0.278 1.278 18 H -0.286 1.286 19 H -0.274 1.274 20 C -0.009 4.009 21 C -0.111 4.111 22 C -0.132 4.132 23 C -0.156 4.156 24 C -0.129 4.129 25 C -0.117 4.117 26 H 0.077 0.923 27 H 0.070 0.930 28 H 0.053 0.947 29 H 0.084 0.916 30 H 0.049 0.951 31 H 0.083 0.917 32 H 0.068 0.932 33 H 0.331 0.669 34 H 0.265 0.735 35 H 0.108 0.892 36 H 0.105 0.895 37 H 0.103 0.897 38 H 0.105 0.895 39 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.107 -0.809 -6.875 7.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.015 3.985 3 H 0.079 0.921 4 O -0.293 6.293 5 C -0.028 4.028 6 C -0.182 4.182 7 C -0.040 4.040 8 H 0.080 0.920 9 N -0.311 5.311 10 C 0.118 3.882 11 H 0.094 0.906 12 C -0.579 4.579 13 H 0.075 0.925 14 C -0.129 4.129 15 N -0.517 5.517 16 Si 0.716 3.284 17 H -0.204 1.204 18 H -0.211 1.211 19 H -0.198 1.198 20 C -0.010 4.010 21 C -0.130 4.130 22 C -0.150 4.150 23 C -0.174 4.174 24 C -0.147 4.147 25 C -0.135 4.135 26 H 0.096 0.904 27 H 0.088 0.912 28 H 0.072 0.928 29 H 0.102 0.898 30 H 0.067 0.933 31 H 0.102 0.898 32 H 0.087 0.913 33 H 0.151 0.849 34 H 0.074 0.926 35 H 0.126 0.874 36 H 0.123 0.877 37 H 0.122 0.878 38 H 0.123 0.877 39 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -0.763 -1.389 -7.255 7.426 hybrid contribution -0.474 1.334 1.831 2.315 sum -1.237 -0.055 -5.424 5.563 Atomic orbital electron populations 1.21762 0.93737 1.03447 1.01610 1.23073 0.95345 0.94432 0.85665 0.92134 1.89072 1.27006 1.74814 1.38389 1.23307 0.84521 0.98866 0.96108 1.22990 0.97912 1.02684 0.94579 1.22573 0.92781 0.93325 0.95346 0.91984 1.61089 1.04452 1.38393 1.27124 1.18437 0.98115 0.87760 0.83933 0.90617 1.21619 1.07923 1.24366 1.03967 0.92545 1.24956 0.94368 0.95351 0.98246 1.69879 1.11698 1.44008 1.26077 0.86647 0.79079 0.80581 0.82068 1.20432 1.21138 1.19839 1.20460 0.93117 0.95523 0.91889 1.20811 0.95572 0.95870 1.00723 1.20951 0.98850 0.94137 1.01072 1.20779 0.95002 0.98463 1.03148 1.20964 0.95370 0.97080 1.01299 1.21045 1.00289 0.92358 0.99836 0.90445 0.91161 0.92762 0.89819 0.93271 0.89828 0.91331 0.84897 0.92556 0.87367 0.87724 0.87842 0.87672 0.86551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.21 8.28 37.16 0.31 -1.90 16 2 C 0.07 1.19 3.89 -25.95 -0.10 1.09 16 3 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 4 O -0.37 -6.40 11.34 -35.23 -0.40 -6.80 16 5 C 0.05 0.73 7.63 37.93 0.29 1.02 16 6 C -0.14 -2.45 6.40 -25.16 -0.16 -2.61 16 7 C 0.07 1.32 3.14 -66.15 -0.21 1.11 16 8 H 0.06 1.30 7.79 -51.93 -0.40 0.90 16 9 N -0.68 -13.66 5.19 -100.53 -0.52 -14.18 16 10 C 0.23 5.22 2.19 -70.02 -0.15 5.07 16 11 H 0.08 1.96 6.44 -51.93 -0.33 1.62 16 12 C -0.54 -13.66 7.98 -34.44 -0.27 -13.93 16 13 H 0.06 1.43 7.76 -52.49 -0.41 1.02 16 14 C 0.08 1.97 5.45 -17.82 -0.10 1.87 16 15 N -0.88 -23.69 12.77 55.43 0.71 -22.98 16 16 Si 0.89 20.49 29.54 -169.99 -5.02 15.46 16 17 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 18 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 19 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 20 C -0.01 -0.19 4.93 -104.62 -0.52 -0.71 16 21 C -0.11 -2.29 9.27 -39.58 -0.37 -2.65 16 22 C -0.13 -2.43 10.05 -39.58 -0.40 -2.83 16 23 C -0.16 -2.79 10.05 -39.58 -0.40 -3.19 16 24 C -0.13 -2.46 10.05 -39.58 -0.40 -2.86 16 25 C -0.12 -2.54 9.67 -39.58 -0.38 -2.93 16 26 H 0.08 1.22 7.09 -51.93 -0.37 0.85 16 27 H 0.07 1.02 7.78 -51.93 -0.40 0.62 16 28 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.08 1.12 8.14 -51.93 -0.42 0.69 16 30 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.08 1.55 7.97 -51.93 -0.41 1.13 16 32 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 33 H 0.33 6.45 4.97 -39.29 -0.20 6.25 16 34 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 35 H 0.11 2.12 7.47 -52.49 -0.39 1.72 16 36 H 0.10 1.63 8.06 -52.49 -0.42 1.21 16 37 H 0.10 1.55 8.06 -52.49 -0.42 1.13 16 38 H 0.11 1.73 8.06 -52.49 -0.42 1.31 16 39 H 0.12 2.62 8.00 -52.49 -0.42 2.20 16 LS Contribution 317.60 15.07 4.79 4.79 Total: -1.00 -27.19 317.60 -9.16 -36.35 By element: Atomic # 1 Polarization: 16.66 SS G_CDS: -5.86 Total: 10.80 kcal Atomic # 6 Polarization: -20.59 SS G_CDS: -2.86 Total: -23.45 kcal Atomic # 7 Polarization: -37.35 SS G_CDS: 0.19 Total: -37.16 kcal Atomic # 8 Polarization: -6.40 SS G_CDS: -0.40 Total: -6.80 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.46 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -27.19 -9.16 -36.35 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000149690186.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.316 kcal (2) G-P(sol) polarization free energy of solvation -27.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds