Wall clock time and date at job start Mon Mar 30 2020 06:11:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09003 * 110.33367 * 2 1 4 4 O 1.44430 * 110.37325 * 237.75376 * 2 1 3 5 5 C 1.44422 * 105.27596 * 200.54752 * 4 2 1 6 6 C 1.54478 * 104.80241 * 40.50902 * 5 4 2 7 7 C 1.54478 * 110.46307 * 122.31814 * 2 1 3 8 8 H 1.09005 * 110.50952 * 261.49571 * 7 2 1 9 9 N 1.46895 * 110.51385 * 24.21397 * 7 2 1 10 10 C 1.46901 * 110.99954 * 195.67462 * 9 7 2 11 11 H 1.09003 * 109.46866 * 324.99309 * 10 9 7 12 12 C 1.50702 * 109.47565 * 84.99608 * 10 9 7 13 13 H 1.08001 * 119.99799 * 34.49081 * 12 10 9 14 14 C 1.37873 * 119.99993 * 214.49542 * 12 10 9 15 15 N 1.31515 * 120.00304 * 5.31122 * 14 12 10 16 16 Si 1.86800 * 119.99542 * 185.30898 * 14 12 10 17 17 H 1.48505 * 109.47080 * 90.00532 * 16 14 12 18 18 H 1.48507 * 109.47248 * 209.99921 * 16 14 12 19 19 H 1.48500 * 109.47572 * 329.99907 * 16 14 12 20 20 C 1.50699 * 109.47111 * 204.99624 * 10 9 7 21 21 C 1.38236 * 119.99986 * 313.86239 * 20 10 9 22 22 C 1.38240 * 119.99615 * 179.78392 * 21 20 10 23 23 C 1.38234 * 120.00287 * 0.44431 * 22 21 20 24 24 C 1.38235 * 119.99824 * 359.80733 * 23 22 21 25 25 C 1.38234 * 120.00170 * 359.97438 * 24 23 22 26 26 H 1.08998 * 109.47270 * 175.69078 * 1 2 3 27 27 H 1.08997 * 109.46858 * 295.69537 * 1 2 3 28 28 H 1.09002 * 109.46960 * 55.69630 * 1 2 3 29 29 H 1.08996 * 110.37056 * 159.34102 * 5 4 2 30 30 H 1.08999 * 110.37167 * 281.68338 * 5 4 2 31 31 H 1.09006 * 110.51171 * 94.66565 * 6 5 4 32 32 H 1.09004 * 110.51323 * 217.37654 * 6 5 4 33 33 H 1.00901 * 110.99772 * 319.62333 * 9 7 2 34 34 H 0.97000 * 120.00021 * 180.02562 * 15 14 12 35 35 H 1.07994 * 119.99612 * 359.97438 * 21 20 10 36 36 H 1.08000 * 119.99555 * 180.27133 * 22 21 20 37 37 H 1.07999 * 120.00007 * 179.82827 * 23 22 21 38 38 H 1.08002 * 119.99829 * 180.02562 * 24 23 22 39 39 H 1.07998 * 120.00223 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9088 1.0221 0.0000 4 8 2.0328 -0.7224 -1.1451 5 6 3.3883 -1.0840 -0.8018 6 6 3.3207 -1.5032 0.6835 7 6 2.0701 -0.7738 1.2231 8 1 2.3451 -0.0835 2.0207 9 7 1.0745 -1.7430 1.6997 10 6 1.4030 -2.2133 3.0521 11 1 2.4857 -2.2780 3.1612 12 6 0.8527 -1.2459 4.0681 13 1 -0.0803 -0.7360 3.8781 14 6 1.5402 -1.0117 5.2400 15 7 2.7253 -1.5506 5.4261 16 14 0.7882 0.0713 6.5633 17 1 -0.0130 -0.7660 7.4920 18 1 1.8699 0.7525 7.3193 19 1 -0.0898 1.0883 5.9310 20 6 0.7938 -3.5739 3.2725 21 6 -0.5191 -3.8103 2.9100 22 6 -1.0766 -5.0597 3.1081 23 6 -0.3241 -6.0700 3.6773 24 6 0.9872 -5.8321 4.0446 25 6 1.5461 -4.5841 3.8423 26 1 -0.3634 -1.0247 -0.0772 27 1 -0.3633 0.4456 0.9260 28 1 -0.3633 0.5792 -0.8489 29 1 3.7257 -1.9183 -1.4166 30 1 4.0520 -0.2281 -0.9246 31 1 3.2002 -2.5831 0.7704 32 1 4.2139 -1.1737 1.2144 33 1 0.1451 -1.3514 1.6690 34 1 3.2087 -1.3861 6.2508 35 1 -1.1082 -3.0198 2.4691 36 1 -2.1009 -5.2456 2.8208 37 1 -0.7605 -7.0453 3.8346 38 1 1.5752 -6.6216 4.4889 39 1 2.5704 -4.3981 4.1297 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000149690186.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:11:42 Heat of formation + Delta-G solvation = -37.274327 kcal Electronic energy + Delta-G solvation = -20125.617143 eV Core-core repulsion = 17225.064658 eV Total energy + Delta-G solvation = -2900.552486 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.68696 -39.74695 -36.81030 -34.45315 -32.70160 -32.32306 -31.50480 -30.23057 -27.86286 -26.31517 -24.60139 -23.13440 -22.87224 -21.58918 -20.69381 -18.72102 -17.76948 -17.30306 -16.68989 -16.56392 -16.33111 -15.93373 -15.53870 -15.51188 -14.67769 -14.23956 -14.00664 -13.73259 -13.43469 -13.31380 -13.21029 -13.16332 -12.90214 -12.82104 -12.61269 -12.12629 -11.99026 -11.89476 -11.83586 -11.61442 -11.46262 -11.26532 -10.69161 -10.54479 -9.55318 -9.31693 -9.02921 -8.12387 -6.31082 0.77361 0.84845 1.34840 1.37680 1.44694 2.35741 3.00492 3.07622 3.26792 3.63180 3.80457 3.96112 4.21393 4.27859 4.30283 4.33733 4.44962 4.46849 4.57769 4.67614 4.75075 4.83180 4.91635 4.96207 5.03401 5.08443 5.09762 5.19157 5.24369 5.35508 5.45343 5.50336 5.63515 5.82245 5.90556 5.96816 6.01916 6.22052 6.35072 6.46704 6.89373 6.94940 7.38177 8.85570 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.013035 B = 0.008846 C = 0.006439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2147.627716 B = 3164.435814 C = 4347.747285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.077 3.923 3 H 0.077 0.923 4 O -0.385 6.385 5 C 0.054 3.946 6 C -0.142 4.142 7 C 0.064 3.936 8 H 0.032 0.968 9 N -0.670 5.670 10 C 0.236 3.764 11 H 0.039 0.961 12 C -0.544 4.544 13 H 0.053 0.947 14 C 0.029 3.971 15 N -0.909 5.909 16 Si 0.944 3.056 17 H -0.281 1.281 18 H -0.284 1.284 19 H -0.266 1.266 20 C -0.036 4.036 21 C -0.125 4.125 22 C -0.128 4.128 23 C -0.148 4.148 24 C -0.130 4.130 25 C -0.143 4.143 26 H 0.067 0.933 27 H 0.070 0.930 28 H 0.076 0.924 29 H 0.102 0.898 30 H 0.073 0.927 31 H 0.063 0.937 32 H 0.067 0.933 33 H 0.334 0.666 34 H 0.263 0.737 35 H 0.112 0.888 36 H 0.140 0.860 37 H 0.144 0.856 38 H 0.131 0.869 39 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.728 -1.344 -7.693 8.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.019 3.981 3 H 0.095 0.905 4 O -0.305 6.305 5 C -0.022 4.022 6 C -0.180 4.180 7 C -0.047 4.047 8 H 0.050 0.950 9 N -0.303 5.303 10 C 0.128 3.872 11 H 0.057 0.943 12 C -0.583 4.583 13 H 0.071 0.929 14 C -0.172 4.172 15 N -0.547 5.547 16 Si 0.770 3.230 17 H -0.207 1.207 18 H -0.210 1.210 19 H -0.190 1.190 20 C -0.038 4.038 21 C -0.143 4.143 22 C -0.146 4.146 23 C -0.166 4.166 24 C -0.148 4.148 25 C -0.162 4.162 26 H 0.086 0.914 27 H 0.089 0.911 28 H 0.094 0.906 29 H 0.120 0.880 30 H 0.091 0.909 31 H 0.082 0.918 32 H 0.086 0.914 33 H 0.155 0.845 34 H 0.072 0.928 35 H 0.130 0.870 36 H 0.158 0.842 37 H 0.161 0.839 38 H 0.149 0.851 39 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -2.392 -1.919 -8.089 8.651 hybrid contribution 0.032 1.427 2.048 2.496 sum -2.360 -0.492 -6.041 6.504 Atomic orbital electron populations 1.21730 0.92611 1.03226 1.02594 1.23095 0.96313 0.94586 0.84105 0.90527 1.89055 1.28037 1.75014 1.38362 1.23417 0.84148 1.00485 0.94201 1.22932 0.97245 1.01208 0.96660 1.22636 0.93339 0.93042 0.95690 0.95001 1.61091 1.04969 1.38885 1.25325 1.18130 0.95813 0.88499 0.84798 0.94303 1.21868 1.07448 1.24563 1.04421 0.92874 1.25617 0.94770 0.96731 1.00125 1.70007 1.12792 1.45522 1.26387 0.85781 0.78309 0.79196 0.79740 1.20685 1.21005 1.19035 1.20450 0.94387 0.95285 0.93646 1.20945 0.94807 0.97362 1.01226 1.21366 1.00467 0.93026 0.99700 1.21243 0.94151 1.00028 1.01217 1.21268 0.96449 0.96360 1.00714 1.21041 0.99650 0.94058 1.01473 0.91449 0.91142 0.90558 0.88010 0.90912 0.91823 0.91417 0.84536 0.92830 0.86982 0.84175 0.83851 0.85143 0.88910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.12 8.28 71.98 0.60 -3.52 16 2 C 0.08 2.45 3.89 31.10 0.12 2.57 16 3 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 4 O -0.39 -12.59 11.34 -148.98 -1.69 -14.28 16 5 C 0.05 1.54 7.63 72.48 0.55 2.10 16 6 C -0.14 -4.99 6.40 31.61 0.20 -4.79 16 7 C 0.06 2.46 3.14 45.93 0.14 2.60 16 8 H 0.03 1.41 7.79 -2.38 -0.02 1.39 16 9 N -0.67 -27.82 5.19 -471.97 -2.45 -30.27 16 10 C 0.24 11.45 2.19 43.42 0.10 11.54 16 11 H 0.04 2.15 6.44 -2.39 -0.02 2.14 16 12 C -0.54 -28.35 7.98 25.60 0.20 -28.14 16 13 H 0.05 2.74 7.76 -2.91 -0.02 2.71 16 14 C 0.03 1.55 5.45 84.65 0.46 2.01 16 15 N -0.91 -51.02 12.77 21.45 0.27 -50.74 16 16 Si 0.94 42.69 29.54 68.60 2.03 44.72 16 17 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 18 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 19 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 20 C -0.04 -1.68 4.93 -19.86 -0.10 -1.78 16 21 C -0.12 -5.05 9.27 22.27 0.21 -4.84 16 22 C -0.13 -4.34 10.05 22.27 0.22 -4.11 16 23 C -0.15 -4.83 10.05 22.27 0.22 -4.61 16 24 C -0.13 -4.78 10.05 22.27 0.22 -4.56 16 25 C -0.14 -6.43 9.67 22.27 0.22 -6.21 16 26 H 0.07 2.06 7.09 -2.39 -0.02 2.04 16 27 H 0.07 1.99 7.78 -2.39 -0.02 1.97 16 28 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 29 H 0.10 2.54 8.14 -2.39 -0.02 2.52 16 30 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 31 H 0.06 2.47 7.97 -2.38 -0.02 2.45 16 32 H 0.07 2.33 8.14 -2.38 -0.02 2.31 16 33 H 0.33 13.24 4.97 -89.69 -0.45 12.79 16 34 H 0.26 14.15 8.31 -92.71 -0.77 13.38 16 35 H 0.11 4.32 7.47 -2.91 -0.02 4.30 16 36 H 0.14 3.74 8.06 -2.91 -0.02 3.72 16 37 H 0.14 3.55 8.06 -2.91 -0.02 3.53 16 38 H 0.13 4.03 8.06 -2.91 -0.02 4.01 16 39 H 0.09 4.47 8.00 -2.91 -0.02 4.45 16 Total: -1.00 -59.89 317.60 2.12 -57.78 By element: Atomic # 1 Polarization: 33.97 SS G_CDS: 0.58 Total: 34.55 kcal Atomic # 6 Polarization: -45.12 SS G_CDS: 3.37 Total: -41.75 kcal Atomic # 7 Polarization: -78.84 SS G_CDS: -2.18 Total: -81.01 kcal Atomic # 8 Polarization: -12.59 SS G_CDS: -1.69 Total: -14.28 kcal Atomic # 14 Polarization: 42.69 SS G_CDS: 2.03 Total: 44.72 kcal Total: -59.89 2.12 -57.78 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000149690186.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.501 kcal (2) G-P(sol) polarization free energy of solvation -59.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds