Wall clock time and date at job start Mon Mar 30 2020 06:41:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46893 * 1 3 3 C 1.46901 * 111.00108 * 2 1 4 4 H 1.09009 * 109.46942 * 293.90771 * 3 2 1 5 5 C 1.50698 * 109.47304 * 53.90296 * 3 2 1 6 6 H 1.08007 * 119.99934 * 35.13115 * 5 3 2 7 7 C 1.37879 * 120.00404 * 215.12560 * 5 3 2 8 8 N 1.31514 * 119.99555 * 5.45256 * 7 5 3 9 9 Si 1.86797 * 120.00112 * 185.45315 * 7 5 3 10 10 H 1.48496 * 109.47136 * 59.99895 * 9 7 5 11 11 H 1.48498 * 109.46865 * 179.97438 * 9 7 5 12 12 H 1.48494 * 109.46971 * 300.00049 * 9 7 5 13 13 C 1.50697 * 109.47414 * 173.90926 * 3 2 1 14 14 C 1.38234 * 120.00029 * 313.98533 * 13 3 2 15 15 C 1.38232 * 120.00164 * 179.76716 * 14 13 3 16 16 C 1.38237 * 120.00074 * 0.50624 * 15 14 13 17 17 C 1.38233 * 119.99909 * 359.74921 * 16 15 14 18 18 C 1.38237 * 120.00346 * 134.25873 * 13 3 2 19 19 C 1.46899 * 111.00374 * 236.04499 * 2 1 3 20 20 H 1.08997 * 110.45934 * 176.55173 * 19 2 1 21 21 C 1.54514 * 110.50841 * 299.15792 * 19 2 1 22 22 C 1.54478 * 104.06437 * 118.64017 * 21 19 2 23 23 O 1.44427 * 104.80423 * 23.97836 * 22 21 19 24 24 C 1.44644 * 105.36884 * 319.56589 * 23 22 21 25 25 H 1.08998 * 109.47380 * 52.86358 * 1 2 3 26 26 H 1.08999 * 109.47108 * 172.86932 * 1 2 3 27 27 H 1.09006 * 109.46941 * 292.86768 * 1 2 3 28 28 H 0.97002 * 119.99709 * 180.02562 * 8 7 5 29 29 H 1.08002 * 119.99842 * 359.97438 * 14 13 3 30 30 H 1.08007 * 120.00182 * 180.22965 * 15 14 13 31 31 H 1.07995 * 119.99991 * 179.72538 * 16 15 14 32 32 H 1.08001 * 120.00249 * 179.97438 * 17 16 15 33 33 H 1.07998 * 119.99884 * 0.02562 * 18 13 3 34 34 H 1.09001 * 110.50857 * 237.28895 * 21 19 2 35 35 H 1.09003 * 110.50820 * 359.86094 * 21 19 2 36 36 H 1.09002 * 110.37324 * 142.80616 * 22 21 19 37 37 H 1.09000 * 110.37414 * 265.03521 * 22 21 19 38 38 H 1.09000 * 110.33864 * 281.59335 * 24 23 22 39 39 H 1.08996 * 110.51251 * 159.18195 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 1 1.7368 1.8599 -0.9396 5 6 1.3940 2.1404 1.1480 6 1 1.1858 1.6406 2.0826 7 6 1.1096 3.4820 1.0055 8 7 1.2623 4.0659 -0.1630 9 14 0.5076 4.4702 2.4719 10 1 1.5305 4.4326 3.5477 11 1 0.2758 5.8776 2.0588 12 1 -0.7615 3.8859 2.9750 13 6 3.4943 1.3341 0.1507 14 6 4.0729 0.5193 1.1058 15 6 5.4481 0.4814 1.2409 16 6 6.2443 1.2663 0.4279 17 6 5.6656 2.0852 -0.5236 18 6 4.2906 2.1191 -0.6622 19 6 1.9955 -0.7660 -1.1375 20 1 3.0837 -0.7096 -1.1638 21 6 1.5312 -2.2377 -1.0605 22 6 0.7018 -2.4377 -2.3483 23 8 1.1956 -1.4362 -3.2644 24 6 1.3944 -0.2485 -2.4632 25 1 -0.3634 0.6204 -0.8192 26 1 -0.3633 -1.0197 -0.1276 27 1 -0.3633 0.3994 0.9470 28 1 1.0626 5.0099 -0.2633 29 1 3.4506 -0.0903 1.7442 30 1 5.9003 -0.1580 1.9846 31 1 7.3185 1.2401 0.5365 32 1 6.2876 2.6988 -1.1585 33 1 3.8384 2.7593 -1.4051 34 1 2.3899 -2.9090 -1.0510 35 1 0.9131 -2.3974 -0.1770 36 1 0.8652 -3.4362 -2.7537 37 1 -0.3575 -2.2798 -2.1458 38 1 0.4418 0.2484 -2.2795 39 1 2.0896 0.4319 -2.9549 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000159411022.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:39 Heat of formation + Delta-G solvation = -9.178420 kcal Electronic energy + Delta-G solvation = -20482.536103 eV Core-core repulsion = 17583.201948 eV Total energy + Delta-G solvation = -2899.334156 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.59711 -38.21432 -35.80971 -32.87170 -30.98440 -30.01944 -29.95527 -28.21202 -26.44014 -24.96896 -22.98902 -21.95919 -21.55225 -20.37463 -18.88078 -16.66799 -16.29161 -15.88853 -15.60600 -15.03465 -14.76994 -14.26593 -14.11109 -13.54873 -13.30575 -12.94769 -12.71152 -12.52093 -11.97403 -11.90057 -11.61800 -11.31699 -11.22933 -11.10192 -10.94759 -10.77900 -10.62141 -10.33743 -10.21226 -10.04580 -9.87431 -9.48084 -9.38938 -8.63830 -8.04193 -7.68213 -7.23609 -6.17844 -4.21004 2.29245 2.32096 3.24908 3.29816 3.32924 4.23579 4.33052 4.68608 5.01034 5.10098 5.18728 5.19640 5.42888 5.59072 5.63315 5.66259 5.76723 5.85269 5.94377 6.06665 6.07642 6.18818 6.25452 6.33801 6.41930 6.44027 6.54181 6.59081 6.85915 6.88028 6.99296 7.10018 7.24948 7.32478 7.40850 7.68710 7.71479 7.78527 8.01730 8.10767 8.44798 8.90427 9.42801 10.88576 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.014543 B = 0.009233 C = 0.006665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1924.859697 B = 3031.713485 C = 4199.863351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 N -0.526 5.526 3 C 0.230 3.770 4 H 0.047 0.953 5 C -0.500 4.500 6 H 0.064 0.936 7 C 0.068 3.932 8 N -0.885 5.885 9 Si 0.896 3.104 10 H -0.275 1.275 11 H -0.287 1.287 12 H -0.275 1.275 13 C -0.025 4.025 14 C -0.102 4.102 15 C -0.136 4.136 16 C -0.152 4.152 17 C -0.130 4.130 18 C -0.118 4.118 19 C 0.054 3.946 20 H 0.089 0.911 21 C -0.149 4.149 22 C 0.044 3.956 23 O -0.383 6.383 24 C 0.011 3.989 25 H 0.022 0.978 26 H 0.043 0.957 27 H 0.075 0.925 28 H 0.265 0.735 29 H 0.119 0.881 30 H 0.105 0.895 31 H 0.104 0.896 32 H 0.106 0.894 33 H 0.116 0.884 34 H 0.070 0.930 35 H 0.086 0.914 36 H 0.083 0.917 37 H 0.054 0.946 38 H 0.068 0.932 39 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.170 -8.305 -1.461 8.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 N -0.250 5.250 3 C 0.125 3.875 4 H 0.064 0.936 5 C -0.538 4.538 6 H 0.082 0.918 7 C -0.136 4.136 8 N -0.522 5.522 9 Si 0.724 3.276 10 H -0.201 1.201 11 H -0.213 1.213 12 H -0.201 1.201 13 C -0.026 4.026 14 C -0.120 4.120 15 C -0.154 4.154 16 C -0.170 4.170 17 C -0.149 4.149 18 C -0.137 4.137 19 C -0.056 4.056 20 H 0.107 0.893 21 C -0.187 4.187 22 C -0.033 4.033 23 O -0.302 6.302 24 C -0.067 4.067 25 H 0.040 0.960 26 H 0.062 0.938 27 H 0.094 0.906 28 H 0.074 0.926 29 H 0.137 0.863 30 H 0.124 0.876 31 H 0.122 0.878 32 H 0.124 0.876 33 H 0.134 0.866 34 H 0.089 0.911 35 H 0.104 0.896 36 H 0.102 0.898 37 H 0.072 0.928 38 H 0.086 0.914 39 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 2.330 -8.363 -1.354 8.787 hybrid contribution -0.474 1.266 0.311 1.387 sum 1.855 -7.097 -1.043 7.410 Atomic orbital electron populations 1.22145 0.88387 0.98361 1.01883 1.62374 1.07336 1.17121 1.38161 1.18551 0.86510 0.83424 0.99044 0.93558 1.20866 1.40704 0.93653 0.98590 0.91792 1.24978 0.94809 0.97982 0.95826 1.69885 1.48028 1.11826 1.22495 0.86582 0.79304 0.78929 0.82827 1.20050 1.21271 1.20091 1.20485 0.97338 0.92374 0.92419 1.20965 0.93510 0.99277 0.98285 1.21013 0.94404 1.00226 0.99745 1.20816 0.98500 0.99456 0.98277 1.20961 0.95129 0.99684 0.99091 1.21086 0.92875 0.99521 1.00232 1.23041 1.00385 0.92818 0.89322 0.89331 1.22994 1.00390 0.96924 0.98414 1.23380 0.97375 0.92723 0.89828 1.89079 1.86296 1.22159 1.32617 1.24292 1.01267 0.88347 0.92818 0.95994 0.93827 0.90634 0.92560 0.86264 0.87645 0.87797 0.87616 0.86583 0.91111 0.89597 0.89845 0.92813 0.91382 0.89516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.76 8.19 60.06 0.49 1.25 16 2 N -0.53 -10.43 4.08 -227.81 -0.93 -11.36 16 3 C 0.23 5.30 1.67 -70.02 -0.12 5.18 16 4 H 0.05 1.19 6.32 -51.92 -0.33 0.87 16 5 C -0.50 -12.72 6.88 -34.44 -0.24 -12.96 16 6 H 0.06 1.65 7.74 -52.48 -0.41 1.25 16 7 C 0.07 1.77 5.45 -17.82 -0.10 1.68 16 8 N -0.89 -23.96 12.77 55.43 0.71 -23.25 16 9 Si 0.90 20.62 29.54 -169.99 -5.02 15.60 16 10 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 11 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 12 H -0.28 -6.23 7.11 56.52 0.40 -5.82 16 13 C -0.02 -0.55 3.53 -104.63 -0.37 -0.92 16 14 C -0.10 -2.07 8.99 -39.59 -0.36 -2.43 16 15 C -0.14 -2.45 10.05 -39.58 -0.40 -2.85 16 16 C -0.15 -2.67 10.05 -39.58 -0.40 -3.06 16 17 C -0.13 -2.44 10.05 -39.58 -0.40 -2.83 16 18 C -0.12 -2.53 9.67 -39.58 -0.38 -2.91 16 19 C 0.05 0.97 2.96 -66.14 -0.20 0.77 16 20 H 0.09 1.68 6.82 -51.93 -0.35 1.33 16 21 C -0.15 -2.18 6.10 -25.16 -0.15 -2.34 16 22 C 0.04 0.62 7.57 37.93 0.29 0.91 16 23 O -0.38 -6.67 11.65 -35.23 -0.41 -7.08 16 24 C 0.01 0.20 6.18 37.94 0.23 0.43 16 25 H 0.02 0.44 6.29 -51.93 -0.33 0.11 16 26 H 0.04 0.70 6.04 -51.93 -0.31 0.38 16 27 H 0.07 1.51 7.17 -51.93 -0.37 1.14 16 28 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 29 H 0.12 2.41 7.91 -52.49 -0.41 2.00 16 30 H 0.11 1.61 8.06 -52.48 -0.42 1.19 16 31 H 0.10 1.52 8.06 -52.49 -0.42 1.10 16 32 H 0.11 1.71 8.06 -52.49 -0.42 1.29 16 33 H 0.12 2.58 8.00 -52.49 -0.42 2.16 16 34 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.09 1.23 6.63 -51.93 -0.34 0.88 16 36 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 37 H 0.05 0.72 8.06 -51.93 -0.42 0.30 16 38 H 0.07 1.30 5.59 -51.93 -0.29 1.01 16 39 H 0.09 1.61 8.14 -51.93 -0.42 1.18 16 LS Contribution 310.17 15.07 4.67 4.67 Total: -1.00 -26.93 310.17 -8.73 -35.66 By element: Atomic # 1 Polarization: 11.49 SS G_CDS: -5.66 Total: 5.83 kcal Atomic # 6 Polarization: -17.98 SS G_CDS: -2.09 Total: -20.07 kcal Atomic # 7 Polarization: -34.39 SS G_CDS: -0.22 Total: -34.61 kcal Atomic # 8 Polarization: -6.67 SS G_CDS: -0.41 Total: -7.08 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -26.93 -8.73 -35.66 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000159411022.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.482 kcal (2) G-P(sol) polarization free energy of solvation -26.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds