Wall clock time and date at job start Mon Mar 30 2020 06:41:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46893 * 1 3 3 C 1.46901 * 111.00108 * 2 1 4 4 H 1.09009 * 109.46942 * 293.90771 * 3 2 1 5 5 C 1.50698 * 109.47304 * 53.90296 * 3 2 1 6 6 H 1.08007 * 119.99934 * 35.13115 * 5 3 2 7 7 C 1.37879 * 120.00404 * 215.12560 * 5 3 2 8 8 N 1.31514 * 119.99555 * 5.45256 * 7 5 3 9 9 Si 1.86797 * 120.00112 * 185.45315 * 7 5 3 10 10 H 1.48496 * 109.47136 * 59.99895 * 9 7 5 11 11 H 1.48498 * 109.46865 * 179.97438 * 9 7 5 12 12 H 1.48494 * 109.46971 * 300.00049 * 9 7 5 13 13 C 1.50697 * 109.47414 * 173.90926 * 3 2 1 14 14 C 1.38234 * 120.00029 * 313.98533 * 13 3 2 15 15 C 1.38232 * 120.00164 * 179.76716 * 14 13 3 16 16 C 1.38237 * 120.00074 * 0.50624 * 15 14 13 17 17 C 1.38233 * 119.99909 * 359.74921 * 16 15 14 18 18 C 1.38237 * 120.00346 * 134.25873 * 13 3 2 19 19 C 1.46899 * 111.00374 * 236.04499 * 2 1 3 20 20 H 1.08997 * 110.45934 * 176.55173 * 19 2 1 21 21 C 1.54514 * 110.50841 * 299.15792 * 19 2 1 22 22 C 1.54478 * 104.06437 * 118.64017 * 21 19 2 23 23 O 1.44427 * 104.80423 * 23.97836 * 22 21 19 24 24 C 1.44644 * 105.36884 * 319.56589 * 23 22 21 25 25 H 1.08998 * 109.47380 * 52.86358 * 1 2 3 26 26 H 1.08999 * 109.47108 * 172.86932 * 1 2 3 27 27 H 1.09006 * 109.46941 * 292.86768 * 1 2 3 28 28 H 0.97002 * 119.99709 * 180.02562 * 8 7 5 29 29 H 1.08002 * 119.99842 * 359.97438 * 14 13 3 30 30 H 1.08007 * 120.00182 * 180.22965 * 15 14 13 31 31 H 1.07995 * 119.99991 * 179.72538 * 16 15 14 32 32 H 1.08001 * 120.00249 * 179.97438 * 17 16 15 33 33 H 1.07998 * 119.99884 * 0.02562 * 18 13 3 34 34 H 1.09001 * 110.50857 * 237.28895 * 21 19 2 35 35 H 1.09003 * 110.50820 * 359.86094 * 21 19 2 36 36 H 1.09002 * 110.37324 * 142.80616 * 22 21 19 37 37 H 1.09000 * 110.37414 * 265.03521 * 22 21 19 38 38 H 1.09000 * 110.33864 * 281.59335 * 24 23 22 39 39 H 1.08996 * 110.51251 * 159.18195 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 1 1.7368 1.8599 -0.9396 5 6 1.3940 2.1404 1.1480 6 1 1.1858 1.6406 2.0826 7 6 1.1096 3.4820 1.0055 8 7 1.2623 4.0659 -0.1630 9 14 0.5076 4.4702 2.4719 10 1 1.5305 4.4326 3.5477 11 1 0.2758 5.8776 2.0588 12 1 -0.7615 3.8859 2.9750 13 6 3.4943 1.3341 0.1507 14 6 4.0729 0.5193 1.1058 15 6 5.4481 0.4814 1.2409 16 6 6.2443 1.2663 0.4279 17 6 5.6656 2.0852 -0.5236 18 6 4.2906 2.1191 -0.6622 19 6 1.9955 -0.7660 -1.1375 20 1 3.0837 -0.7096 -1.1638 21 6 1.5312 -2.2377 -1.0605 22 6 0.7018 -2.4377 -2.3483 23 8 1.1956 -1.4362 -3.2644 24 6 1.3944 -0.2485 -2.4632 25 1 -0.3634 0.6204 -0.8192 26 1 -0.3633 -1.0197 -0.1276 27 1 -0.3633 0.3994 0.9470 28 1 1.0626 5.0099 -0.2633 29 1 3.4506 -0.0903 1.7442 30 1 5.9003 -0.1580 1.9846 31 1 7.3185 1.2401 0.5365 32 1 6.2876 2.6988 -1.1585 33 1 3.8384 2.7593 -1.4051 34 1 2.3899 -2.9090 -1.0510 35 1 0.9131 -2.3974 -0.1770 36 1 0.8652 -3.4362 -2.7537 37 1 -0.3575 -2.2798 -2.1458 38 1 0.4418 0.2484 -2.2795 39 1 2.0896 0.4319 -2.9549 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000159411022.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:39 Heat of formation + Delta-G solvation = -24.744658 kcal Electronic energy + Delta-G solvation = -20483.211106 eV Core-core repulsion = 17583.201948 eV Total energy + Delta-G solvation = -2900.009158 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.05141 -39.70226 -37.35861 -34.72006 -32.57006 -31.51388 -31.37650 -29.65148 -28.18576 -26.65351 -24.55285 -23.33891 -23.08272 -21.89662 -20.40893 -18.51124 -17.71509 -17.44920 -17.04630 -16.58876 -16.37412 -15.79632 -15.67582 -15.05781 -14.93850 -14.45248 -14.09384 -14.00933 -13.68803 -13.55881 -13.14448 -12.92123 -12.79445 -12.68308 -12.57842 -12.31609 -12.07203 -11.93977 -11.70025 -11.63248 -11.53212 -11.16723 -10.81357 -10.61703 -9.56736 -9.27221 -8.89524 -8.15126 -6.24348 0.75379 0.80136 1.39884 1.41585 1.48017 2.38535 2.89391 3.09225 3.27555 3.53663 3.76515 3.89563 4.09389 4.22622 4.28742 4.32006 4.36273 4.44550 4.55379 4.66572 4.71379 4.77513 4.83072 4.90908 4.96664 4.98305 5.08057 5.16334 5.28948 5.31883 5.44652 5.49277 5.68043 5.76023 5.81530 5.86353 6.05759 6.11969 6.33739 6.45106 6.73867 6.93950 7.42264 8.89540 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.014543 B = 0.009233 C = 0.006665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1924.859697 B = 3031.713485 C = 4199.863351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.045 3.955 2 N -0.523 5.523 3 C 0.239 3.761 4 H 0.008 0.992 5 C -0.504 4.504 6 H 0.057 0.943 7 C 0.021 3.979 8 N -0.916 5.916 9 Si 0.950 3.050 10 H -0.275 1.275 11 H -0.287 1.287 12 H -0.267 1.267 13 C -0.046 4.046 14 C -0.114 4.114 15 C -0.129 4.129 16 C -0.144 4.144 17 C -0.131 4.131 18 C -0.143 4.143 19 C 0.055 3.945 20 H 0.076 0.924 21 C -0.140 4.140 22 C 0.040 3.960 23 O -0.396 6.396 24 C 0.019 3.981 25 H 0.003 0.997 26 H 0.077 0.923 27 H 0.060 0.940 28 H 0.262 0.738 29 H 0.116 0.884 30 H 0.141 0.859 31 H 0.144 0.856 32 H 0.130 0.870 33 H 0.090 0.910 34 H 0.088 0.912 35 H 0.094 0.906 36 H 0.115 0.885 37 H 0.063 0.937 38 H 0.054 0.946 39 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.474 -10.221 -0.376 10.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 N -0.246 5.246 3 C 0.133 3.867 4 H 0.026 0.974 5 C -0.542 4.542 6 H 0.075 0.925 7 C -0.179 4.179 8 N -0.554 5.554 9 Si 0.776 3.224 10 H -0.201 1.201 11 H -0.213 1.213 12 H -0.192 1.192 13 C -0.047 4.047 14 C -0.132 4.132 15 C -0.147 4.147 16 C -0.162 4.162 17 C -0.149 4.149 18 C -0.162 4.162 19 C -0.055 4.055 20 H 0.094 0.906 21 C -0.177 4.177 22 C -0.036 4.036 23 O -0.315 6.315 24 C -0.060 4.060 25 H 0.021 0.979 26 H 0.096 0.904 27 H 0.079 0.921 28 H 0.071 0.929 29 H 0.134 0.866 30 H 0.158 0.842 31 H 0.162 0.838 32 H 0.148 0.852 33 H 0.109 0.891 34 H 0.107 0.893 35 H 0.112 0.888 36 H 0.133 0.867 37 H 0.081 0.919 38 H 0.072 0.928 39 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 3.628 -10.303 -0.264 10.927 hybrid contribution -0.816 1.774 -0.065 1.954 sum 2.811 -8.530 -0.329 8.987 Atomic orbital electron populations 1.22121 0.87964 0.99907 1.00268 1.62335 1.07675 1.15414 1.39209 1.18259 0.87747 0.84457 0.96254 0.97427 1.21079 1.40336 0.93989 0.98839 0.92521 1.25644 0.95410 0.99009 0.97826 1.70022 1.49644 1.11711 1.24049 0.85732 0.79016 0.77610 0.80069 1.20064 1.21297 1.19224 1.20389 0.96571 0.93891 0.93890 1.21000 0.94914 0.99299 0.97990 1.21398 0.93310 1.00020 0.99976 1.21263 1.00519 0.97730 0.96660 1.21256 0.93995 0.99984 0.99671 1.21054 0.94506 1.00086 1.00575 1.23037 0.99554 0.94691 0.88190 0.90623 1.22970 1.01301 0.94376 0.99101 1.23643 0.97643 0.93234 0.89060 1.89067 1.86600 1.22320 1.33503 1.24067 1.00083 0.88683 0.93162 0.97900 0.90449 0.92125 0.92946 0.86606 0.84155 0.83810 0.85204 0.89131 0.89318 0.88767 0.86695 0.91913 0.92833 0.91169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.73 8.19 127.69 1.05 2.78 16 2 N -0.52 -21.08 4.08 -874.66 -3.57 -24.65 16 3 C 0.24 11.49 1.67 43.42 0.07 11.56 16 4 H 0.01 0.43 6.32 -2.38 -0.02 0.42 16 5 C -0.50 -26.47 6.88 25.60 0.18 -26.29 16 6 H 0.06 2.99 7.74 -2.91 -0.02 2.97 16 7 C 0.02 1.15 5.45 84.66 0.46 1.61 16 8 N -0.92 -51.88 12.77 21.45 0.27 -51.61 16 9 Si 0.95 43.10 29.54 68.60 2.03 45.13 16 10 H -0.28 -12.39 7.11 99.48 0.71 -11.69 16 11 H -0.29 -12.94 7.11 99.48 0.71 -12.23 16 12 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 13 C -0.05 -2.08 3.53 -19.87 -0.07 -2.15 16 14 C -0.11 -4.51 8.99 22.27 0.20 -4.31 16 15 C -0.13 -4.26 10.05 22.27 0.22 -4.04 16 16 C -0.14 -4.54 10.05 22.27 0.22 -4.31 16 17 C -0.13 -4.71 10.05 22.27 0.22 -4.49 16 18 C -0.14 -6.29 9.67 22.27 0.22 -6.08 16 19 C 0.06 1.96 2.96 45.94 0.14 2.10 16 20 H 0.08 2.90 6.82 -2.39 -0.02 2.88 16 21 C -0.14 -3.76 6.10 31.61 0.19 -3.57 16 22 C 0.04 1.03 7.57 72.48 0.55 1.58 16 23 O -0.40 -13.50 11.65 -148.98 -1.74 -15.24 16 24 C 0.02 0.69 6.18 72.49 0.45 1.14 16 25 H 0.00 0.11 6.29 -2.39 -0.02 0.09 16 26 H 0.08 2.38 6.04 -2.39 -0.01 2.37 16 27 H 0.06 2.47 7.17 -2.38 -0.02 2.46 16 28 H 0.26 14.29 8.31 -92.71 -0.77 13.52 16 29 H 0.12 4.60 7.91 -2.91 -0.02 4.58 16 30 H 0.14 3.64 8.06 -2.91 -0.02 3.62 16 31 H 0.14 3.44 8.06 -2.91 -0.02 3.41 16 32 H 0.13 3.94 8.06 -2.91 -0.02 3.92 16 33 H 0.09 4.33 8.00 -2.91 -0.02 4.31 16 34 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 35 H 0.09 2.41 6.63 -2.39 -0.02 2.39 16 36 H 0.12 2.26 8.14 -2.39 -0.02 2.24 16 37 H 0.06 1.51 8.06 -2.39 -0.02 1.49 16 38 H 0.05 2.15 5.59 -2.39 -0.01 2.14 16 39 H 0.07 2.79 8.14 -2.39 -0.02 2.78 16 Total: -1.00 -60.16 310.17 2.12 -58.05 By element: Atomic # 1 Polarization: 21.77 SS G_CDS: 1.03 Total: 22.80 kcal Atomic # 6 Polarization: -38.57 SS G_CDS: 4.10 Total: -34.48 kcal Atomic # 7 Polarization: -72.96 SS G_CDS: -3.30 Total: -76.26 kcal Atomic # 8 Polarization: -13.50 SS G_CDS: -1.74 Total: -15.24 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 2.03 Total: 45.13 kcal Total: -60.16 2.12 -58.05 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000159411022.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.302 kcal (2) G-P(sol) polarization free energy of solvation -60.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.047 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds