Wall clock time and date at job start Mon Mar 30 2020 06:40:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46902 * 111.00517 * 2 1 4 4 C 1.50705 * 109.46841 * 293.95855 * 3 2 1 5 5 H 1.07997 * 120.00075 * 359.97438 * 4 3 2 6 6 C 1.37874 * 119.99947 * 180.02562 * 4 3 2 7 7 N 1.31516 * 120.00127 * 359.97438 * 6 4 3 8 8 Si 1.86800 * 120.00177 * 179.97438 * 6 4 3 9 9 H 1.48496 * 109.47302 * 59.99632 * 8 6 4 10 10 H 1.48500 * 109.47224 * 179.97438 * 8 6 4 11 11 H 1.48507 * 109.46613 * 299.99377 * 8 6 4 12 12 C 1.46904 * 111.00218 * 123.95485 * 2 1 3 13 13 C 1.52998 * 109.46683 * 66.03973 * 12 2 1 14 14 H 1.08996 * 109.41155 * 307.59361 * 13 12 2 15 15 C 1.53082 * 109.43523 * 187.68798 * 13 12 2 16 16 C 1.53412 * 108.32372 * 191.69954 * 15 13 12 17 17 O 1.42816 * 108.39034 * 64.68637 * 16 15 13 18 18 C 1.35850 * 117.87607 * 310.87754 * 17 16 15 19 19 C 1.39143 * 118.50475 * 197.12500 * 18 17 16 20 20 C 1.37969 * 120.21417 * 180.22468 * 19 18 17 21 21 C 1.38290 * 119.96334 * 0.02562 * 20 19 18 22 22 C 1.38106 * 119.97545 * 359.90127 * 21 20 19 23 23 C 1.38365 * 121.80305 * 17.19217 * 18 17 16 24 24 H 1.09003 * 109.46887 * 296.04945 * 1 2 3 25 25 H 1.09006 * 109.47232 * 56.04075 * 1 2 3 26 26 H 1.08998 * 109.47447 * 176.04888 * 1 2 3 27 27 H 1.09001 * 109.46750 * 53.95125 * 3 2 1 28 28 H 1.08994 * 109.47246 * 173.95581 * 3 2 1 29 29 H 0.96996 * 120.00086 * 179.97438 * 7 6 4 30 30 H 1.09000 * 109.46916 * 306.04495 * 12 2 1 31 31 H 1.08997 * 109.47220 * 186.04604 * 12 2 1 32 32 H 1.09002 * 109.69251 * 71.98374 * 15 13 12 33 33 H 1.08993 * 109.70229 * 311.42635 * 15 13 12 34 34 H 1.08996 * 109.67812 * 184.40912 * 16 15 13 35 35 H 1.08997 * 109.68025 * 304.96195 * 16 15 13 36 36 H 1.08000 * 119.89619 * 0.23255 * 19 18 17 37 37 H 1.08005 * 120.01735 * 180.02562 * 20 19 18 38 38 H 1.07989 * 120.01144 * 179.97438 * 21 20 19 39 39 H 1.08005 * 119.83661 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3714 0.0000 4 6 1.6369 2.0471 -1.2985 5 1 1.0746 1.5113 -2.0487 6 6 2.0278 3.3491 -1.5290 7 7 2.7131 4.0015 -0.6155 8 14 1.5839 4.1865 -3.1387 9 1 0.1068 4.2238 -3.2864 10 1 2.1161 5.5728 -3.1387 11 1 2.1757 3.4286 -4.2704 12 6 1.9955 -0.7660 1.1376 13 6 1.6313 -2.2426 0.9703 14 1 0.5591 -2.3339 0.7974 15 6 2.0095 -3.0076 2.2412 16 6 1.9125 -4.5100 1.9466 17 8 2.8941 -4.8408 0.9634 18 6 2.9601 -4.0693 -0.1528 19 6 3.6343 -4.5657 -1.2642 20 6 3.7269 -3.8101 -2.4148 21 6 3.1488 -2.5548 -2.4652 22 6 2.4777 -2.0596 -1.3644 23 6 2.3795 -2.8146 -0.2074 24 1 -0.3633 0.4513 0.9233 25 1 -0.3634 0.5741 -0.8524 26 1 -0.3634 -1.0252 -0.0708 27 1 1.5612 1.9273 0.8309 28 1 3.0798 1.3443 0.1082 29 1 2.9883 4.9173 -0.7778 30 1 1.5612 -0.3873 2.0628 31 1 3.0797 -0.6611 1.1756 32 1 1.3223 -2.7458 3.0457 33 1 3.0291 -2.7553 2.5323 34 1 2.1014 -5.0759 2.8588 35 1 0.9185 -4.7462 1.5668 36 1 4.0864 -5.5458 -1.2261 37 1 4.2506 -4.1987 -3.2758 38 1 3.2212 -1.9625 -3.3652 39 1 2.0274 -1.0787 -1.4061 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000162439735.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:28 Heat of formation + Delta-G solvation = -8.161317 kcal Electronic energy + Delta-G solvation = -19980.934362 eV Core-core repulsion = 17081.644311 eV Total energy + Delta-G solvation = -2899.290051 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.52230 -37.38509 -36.88846 -34.05669 -32.35257 -30.32843 -29.77287 -27.89390 -26.94662 -25.06730 -23.51234 -22.68614 -21.50272 -20.33327 -19.51346 -17.37122 -16.45925 -16.34462 -15.88014 -15.08005 -14.66185 -14.47700 -14.33414 -14.00035 -13.63826 -13.22671 -12.84432 -12.76596 -12.41205 -12.06816 -11.95988 -11.55124 -11.25594 -11.20452 -10.92588 -10.91461 -10.81200 -10.66151 -10.47448 -10.35124 -10.08121 -9.81814 -9.22626 -8.46365 -8.30094 -7.79703 -7.22915 -6.06078 -4.08128 1.75249 1.90583 3.31574 3.36109 3.38528 3.48788 4.18220 4.38798 4.65698 4.79239 4.92341 5.11233 5.18395 5.27895 5.30950 5.39474 5.50759 5.62977 5.75123 5.77421 5.88019 5.97211 6.03043 6.03276 6.13163 6.22083 6.29683 6.45851 6.58105 6.69821 6.75729 7.08629 7.17579 7.22740 7.25981 7.44386 7.72838 7.79726 8.00807 8.10572 8.45658 8.98696 9.56415 11.04745 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.025317 B = 0.005647 C = 0.004923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1105.725798 B = 4957.214258 C = 5686.558455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.533 5.533 3 C 0.190 3.810 4 C -0.510 4.510 5 H 0.064 0.936 6 C 0.057 3.943 7 N -0.898 5.898 8 Si 0.898 3.102 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.275 1.275 12 C 0.063 3.937 13 C -0.043 4.043 14 H 0.082 0.918 15 C -0.155 4.155 16 C 0.065 3.935 17 O -0.324 6.324 18 C 0.119 3.881 19 C -0.168 4.168 20 C -0.095 4.095 21 C -0.161 4.161 22 C -0.076 4.076 23 C -0.150 4.150 24 H 0.014 0.986 25 H 0.077 0.923 26 H 0.047 0.953 27 H -0.007 1.007 28 H 0.031 0.969 29 H 0.262 0.738 30 H 0.029 0.971 31 H 0.071 0.929 32 H 0.080 0.920 33 H 0.077 0.923 34 H 0.101 0.899 35 H 0.060 0.940 36 H 0.119 0.881 37 H 0.118 0.882 38 H 0.119 0.881 39 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.852 -15.050 3.137 15.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 N -0.257 5.257 3 C 0.065 3.935 4 C -0.549 4.549 5 H 0.082 0.918 6 C -0.145 4.145 7 N -0.537 5.537 8 Si 0.725 3.275 9 H -0.203 1.203 10 H -0.214 1.214 11 H -0.201 1.201 12 C -0.065 4.065 13 C -0.062 4.062 14 H 0.100 0.900 15 C -0.193 4.193 16 C -0.010 4.010 17 O -0.238 6.238 18 C 0.075 3.925 19 C -0.187 4.187 20 C -0.113 4.113 21 C -0.179 4.179 22 C -0.093 4.093 23 C -0.150 4.150 24 H 0.032 0.968 25 H 0.095 0.905 26 H 0.066 0.934 27 H 0.011 0.989 28 H 0.049 0.951 29 H 0.072 0.928 30 H 0.048 0.952 31 H 0.089 0.911 32 H 0.099 0.901 33 H 0.096 0.904 34 H 0.120 0.880 35 H 0.078 0.922 36 H 0.137 0.863 37 H 0.136 0.864 38 H 0.137 0.863 39 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -1.494 -15.235 2.807 15.564 hybrid contribution -0.481 1.083 0.003 1.185 sum -1.976 -14.153 2.810 14.564 Atomic orbital electron populations 1.22317 0.88936 0.99687 1.00930 1.62013 1.07022 1.17706 1.38944 1.19777 0.95527 0.81343 0.96815 1.21097 1.35113 0.97027 1.01629 0.91830 1.24976 0.95201 0.97356 0.96929 1.69945 1.38117 1.11545 1.34097 0.86570 0.78675 0.78399 0.83825 1.20299 1.21387 1.20088 1.22069 1.00431 0.91278 0.92732 1.20120 0.99505 0.95169 0.91402 0.90023 1.22272 1.03435 0.95195 0.98440 1.22868 0.91338 0.95906 0.90908 1.85924 1.55529 1.53994 1.28374 1.18784 0.97728 0.89853 0.86179 1.20369 1.05479 1.01037 0.91801 1.20903 0.98936 0.94791 0.96704 1.21220 1.00991 0.96014 0.99720 1.22756 0.94329 1.02212 0.90023 1.19751 1.04292 0.93522 0.97481 0.96757 0.90457 0.93408 0.98928 0.95092 0.92832 0.95237 0.91063 0.90137 0.90438 0.88046 0.92215 0.86318 0.86417 0.86281 0.79466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.54 9.14 60.06 0.55 1.09 16 2 N -0.53 -10.73 1.45 -244.37 -0.35 -11.08 16 3 C 0.19 4.75 4.72 -4.97 -0.02 4.73 16 4 C -0.51 -13.75 8.46 -34.44 -0.29 -14.04 16 5 H 0.06 1.67 7.12 -52.49 -0.37 1.30 16 6 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 7 N -0.90 -26.24 13.29 55.43 0.74 -25.50 16 8 Si 0.90 21.21 29.54 -169.99 -5.02 16.19 16 9 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 10 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 11 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 12 C 0.06 1.10 4.08 -3.82 -0.02 1.09 16 13 C -0.04 -0.65 2.40 -91.68 -0.22 -0.87 16 14 H 0.08 1.19 6.23 -51.93 -0.32 0.86 16 15 C -0.16 -1.87 5.49 -26.48 -0.15 -2.02 16 16 C 0.07 0.74 7.03 37.37 0.26 1.00 16 17 O -0.32 -4.76 10.27 -19.27 -0.20 -4.95 16 18 C 0.12 1.91 6.47 -39.20 -0.25 1.65 16 19 C -0.17 -2.53 9.94 -39.34 -0.39 -2.92 16 20 C -0.10 -1.39 10.04 -39.66 -0.40 -1.79 16 21 C -0.16 -2.65 10.05 -39.61 -0.40 -3.04 16 22 C -0.08 -1.35 9.02 -39.53 -0.36 -1.71 16 23 C -0.15 -2.49 5.43 -104.43 -0.57 -3.05 16 24 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 25 H 0.08 1.51 6.76 -51.93 -0.35 1.16 16 26 H 0.05 0.75 6.32 -51.93 -0.33 0.42 16 27 H -0.01 -0.19 8.12 -51.93 -0.42 -0.61 16 28 H 0.03 0.84 7.93 -51.93 -0.41 0.43 16 29 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 30 H 0.03 0.50 8.11 -51.93 -0.42 0.07 16 31 H 0.07 1.32 7.92 -51.93 -0.41 0.91 16 32 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.08 0.99 8.10 -51.93 -0.42 0.57 16 34 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.12 1.56 8.06 -52.49 -0.42 1.13 16 37 H 0.12 1.39 8.06 -52.48 -0.42 0.97 16 38 H 0.12 1.82 8.06 -52.49 -0.42 1.40 16 39 H 0.19 3.75 4.78 -52.48 -0.25 3.50 16 LS Contribution 310.03 15.07 4.67 4.67 Total: -1.00 -29.28 310.03 -8.32 -37.60 By element: Atomic # 1 Polarization: 7.29 SS G_CDS: -5.81 Total: 1.48 kcal Atomic # 6 Polarization: -16.06 SS G_CDS: -2.35 Total: -18.41 kcal Atomic # 7 Polarization: -36.97 SS G_CDS: 0.38 Total: -36.58 kcal Atomic # 8 Polarization: -4.76 SS G_CDS: -0.20 Total: -4.95 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -29.28 -8.32 -37.60 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000162439735.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.439 kcal (2) G-P(sol) polarization free energy of solvation -29.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.600 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds