Wall clock time and date at job start Mon Mar 30 2020 06:40:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46902 * 111.00517 * 2 1 4 4 C 1.50705 * 109.46841 * 293.95855 * 3 2 1 5 5 H 1.07997 * 120.00075 * 359.97438 * 4 3 2 6 6 C 1.37874 * 119.99947 * 180.02562 * 4 3 2 7 7 N 1.31516 * 120.00127 * 359.97438 * 6 4 3 8 8 Si 1.86800 * 120.00177 * 179.97438 * 6 4 3 9 9 H 1.48496 * 109.47302 * 59.99632 * 8 6 4 10 10 H 1.48500 * 109.47224 * 179.97438 * 8 6 4 11 11 H 1.48507 * 109.46613 * 299.99377 * 8 6 4 12 12 C 1.46904 * 111.00218 * 123.95485 * 2 1 3 13 13 C 1.52998 * 109.46683 * 66.03973 * 12 2 1 14 14 H 1.08996 * 109.41155 * 307.59361 * 13 12 2 15 15 C 1.53082 * 109.43523 * 187.68798 * 13 12 2 16 16 C 1.53412 * 108.32372 * 191.69954 * 15 13 12 17 17 O 1.42816 * 108.39034 * 64.68637 * 16 15 13 18 18 C 1.35850 * 117.87607 * 310.87754 * 17 16 15 19 19 C 1.39143 * 118.50475 * 197.12500 * 18 17 16 20 20 C 1.37969 * 120.21417 * 180.22468 * 19 18 17 21 21 C 1.38290 * 119.96334 * 0.02562 * 20 19 18 22 22 C 1.38106 * 119.97545 * 359.90127 * 21 20 19 23 23 C 1.38365 * 121.80305 * 17.19217 * 18 17 16 24 24 H 1.09003 * 109.46887 * 296.04945 * 1 2 3 25 25 H 1.09006 * 109.47232 * 56.04075 * 1 2 3 26 26 H 1.08998 * 109.47447 * 176.04888 * 1 2 3 27 27 H 1.09001 * 109.46750 * 53.95125 * 3 2 1 28 28 H 1.08994 * 109.47246 * 173.95581 * 3 2 1 29 29 H 0.96996 * 120.00086 * 179.97438 * 7 6 4 30 30 H 1.09000 * 109.46916 * 306.04495 * 12 2 1 31 31 H 1.08997 * 109.47220 * 186.04604 * 12 2 1 32 32 H 1.09002 * 109.69251 * 71.98374 * 15 13 12 33 33 H 1.08993 * 109.70229 * 311.42635 * 15 13 12 34 34 H 1.08996 * 109.67812 * 184.40912 * 16 15 13 35 35 H 1.08997 * 109.68025 * 304.96195 * 16 15 13 36 36 H 1.08000 * 119.89619 * 0.23255 * 19 18 17 37 37 H 1.08005 * 120.01735 * 180.02562 * 20 19 18 38 38 H 1.07989 * 120.01144 * 179.97438 * 21 20 19 39 39 H 1.08005 * 119.83661 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3714 0.0000 4 6 1.6369 2.0471 -1.2985 5 1 1.0746 1.5113 -2.0487 6 6 2.0278 3.3491 -1.5290 7 7 2.7131 4.0015 -0.6155 8 14 1.5839 4.1865 -3.1387 9 1 0.1068 4.2238 -3.2864 10 1 2.1161 5.5728 -3.1387 11 1 2.1757 3.4286 -4.2704 12 6 1.9955 -0.7660 1.1376 13 6 1.6313 -2.2426 0.9703 14 1 0.5591 -2.3339 0.7974 15 6 2.0095 -3.0076 2.2412 16 6 1.9125 -4.5100 1.9466 17 8 2.8941 -4.8408 0.9634 18 6 2.9601 -4.0693 -0.1528 19 6 3.6343 -4.5657 -1.2642 20 6 3.7269 -3.8101 -2.4148 21 6 3.1488 -2.5548 -2.4652 22 6 2.4777 -2.0596 -1.3644 23 6 2.3795 -2.8146 -0.2074 24 1 -0.3633 0.4513 0.9233 25 1 -0.3634 0.5741 -0.8524 26 1 -0.3634 -1.0252 -0.0708 27 1 1.5612 1.9273 0.8309 28 1 3.0798 1.3443 0.1082 29 1 2.9883 4.9173 -0.7778 30 1 1.5612 -0.3873 2.0628 31 1 3.0797 -0.6611 1.1756 32 1 1.3223 -2.7458 3.0457 33 1 3.0291 -2.7553 2.5323 34 1 2.1014 -5.0759 2.8588 35 1 0.9185 -4.7462 1.5668 36 1 4.0864 -5.5458 -1.2261 37 1 4.2506 -4.1987 -3.2758 38 1 3.2212 -1.9625 -3.3652 39 1 2.0274 -1.0787 -1.4061 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000162439735.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:27 Heat of formation + Delta-G solvation = -23.301382 kcal Electronic energy + Delta-G solvation = -19981.590884 eV Core-core repulsion = 17081.644311 eV Total energy + Delta-G solvation = -2899.946573 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.67520 -38.79918 -38.13730 -35.55151 -34.25677 -31.44058 -30.98122 -29.61786 -28.50953 -26.63568 -24.75953 -24.09828 -22.87481 -21.92995 -20.65189 -18.52630 -18.50448 -17.53438 -17.01762 -16.76575 -16.11162 -15.93850 -15.75613 -15.41589 -14.99138 -14.42945 -14.28203 -13.97255 -13.88311 -13.62818 -13.32839 -13.13301 -12.80946 -12.68369 -12.55809 -12.43172 -12.29706 -12.11096 -12.00267 -11.63789 -11.55007 -11.34053 -11.04363 -10.59870 -9.54167 -9.01337 -8.85047 -8.19471 -6.29302 0.54542 0.66277 1.42273 1.44997 1.52613 2.40665 2.46706 2.95319 3.13541 3.25790 3.75166 3.77143 3.92516 4.05592 4.25569 4.34830 4.36375 4.50723 4.58477 4.60317 4.63820 4.73396 4.74912 4.81320 4.85802 4.89190 5.07325 5.12055 5.18415 5.24243 5.31849 5.39932 5.54966 5.65211 5.87015 5.93228 6.03647 6.13636 6.28331 6.57933 6.63149 6.86557 7.40407 8.91515 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.025317 B = 0.005647 C = 0.004923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1105.725798 B = 4957.214258 C = 5686.558455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.533 5.533 3 C 0.207 3.793 4 C -0.520 4.520 5 H 0.067 0.933 6 C 0.002 3.998 7 N -0.936 5.936 8 Si 0.967 3.033 9 H -0.267 1.267 10 H -0.286 1.286 11 H -0.268 1.268 12 C 0.067 3.933 13 C -0.037 4.037 14 H 0.090 0.910 15 C -0.150 4.150 16 C 0.061 3.939 17 O -0.332 6.332 18 C 0.113 3.887 19 C -0.173 4.173 20 C -0.089 4.089 21 C -0.177 4.177 22 C -0.101 4.101 23 C -0.162 4.162 24 H 0.015 0.985 25 H 0.060 0.940 26 H 0.078 0.922 27 H -0.036 1.036 28 H -0.001 1.001 29 H 0.263 0.737 30 H 0.037 0.963 31 H 0.051 0.949 32 H 0.107 0.893 33 H 0.067 0.933 34 H 0.135 0.865 35 H 0.071 0.929 36 H 0.141 0.859 37 H 0.149 0.851 38 H 0.122 0.878 39 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.561 -17.043 2.899 17.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 N -0.256 5.256 3 C 0.081 3.919 4 C -0.558 4.558 5 H 0.085 0.915 6 C -0.196 4.196 7 N -0.576 5.576 8 Si 0.791 3.209 9 H -0.191 1.191 10 H -0.211 1.211 11 H -0.193 1.193 12 C -0.061 4.061 13 C -0.055 4.055 14 H 0.108 0.892 15 C -0.188 4.188 16 C -0.014 4.014 17 O -0.246 6.246 18 C 0.068 3.932 19 C -0.191 4.191 20 C -0.107 4.107 21 C -0.196 4.196 22 C -0.119 4.119 23 C -0.163 4.163 24 H 0.034 0.966 25 H 0.079 0.921 26 H 0.097 0.903 27 H -0.018 1.018 28 H 0.018 0.982 29 H 0.072 0.928 30 H 0.055 0.945 31 H 0.069 0.931 32 H 0.125 0.875 33 H 0.086 0.914 34 H 0.153 0.847 35 H 0.089 0.911 36 H 0.158 0.842 37 H 0.166 0.834 38 H 0.140 0.860 39 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -2.219 -17.256 2.577 17.588 hybrid contribution -0.244 1.627 0.129 1.650 sum -2.463 -15.629 2.706 16.052 Atomic orbital electron populations 1.22303 0.87507 1.01347 1.00236 1.61985 1.08234 1.14744 1.40635 1.19392 0.93503 0.83817 0.95210 1.21424 1.34755 0.97399 1.02253 0.91507 1.25884 0.95030 0.98152 1.00488 1.70081 1.39393 1.11905 1.36251 0.85475 0.78854 0.77127 0.79410 1.19145 1.21149 1.19342 1.22071 0.99141 0.92973 0.91945 1.20086 0.99694 0.93128 0.92585 0.89233 1.22267 1.03542 0.95542 0.97489 1.23185 0.91323 0.95476 0.91375 1.85919 1.56587 1.53791 1.28351 1.18944 0.97456 0.89744 0.87035 1.20736 1.04900 1.01935 0.91558 1.21196 0.98050 0.93754 0.97720 1.21365 1.01520 0.97162 0.99524 1.22601 0.95921 1.01791 0.91561 1.19875 1.04904 0.94033 0.97495 0.96595 0.92097 0.90322 1.01783 0.98246 0.92785 0.94520 0.93085 0.87500 0.91376 0.84746 0.91080 0.84163 0.83379 0.86040 0.81863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.24 9.14 127.69 1.17 2.41 16 2 N -0.53 -22.03 1.45 -927.03 -1.34 -23.37 16 3 C 0.21 10.85 4.72 85.56 0.40 11.25 16 4 C -0.52 -28.81 8.46 25.60 0.22 -28.60 16 5 H 0.07 3.58 7.12 -2.91 -0.02 3.56 16 6 C 0.00 0.14 5.46 84.65 0.46 0.60 16 7 N -0.94 -56.23 13.29 21.45 0.28 -55.95 16 8 Si 0.97 43.90 29.54 68.60 2.03 45.93 16 9 H -0.27 -11.57 7.11 99.48 0.71 -10.87 16 10 H -0.29 -12.80 7.11 99.48 0.71 -12.09 16 11 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 12 C 0.07 2.36 4.08 86.30 0.35 2.71 16 13 C -0.04 -1.05 2.40 -11.48 -0.03 -1.07 16 14 H 0.09 2.41 6.23 -2.39 -0.01 2.40 16 15 C -0.15 -3.27 5.49 30.76 0.17 -3.10 16 16 C 0.06 1.17 7.03 72.12 0.51 1.68 16 17 O -0.33 -8.89 10.27 -91.87 -0.94 -9.83 16 18 C 0.11 3.43 6.47 22.52 0.15 3.58 16 19 C -0.17 -4.83 9.94 22.42 0.22 -4.61 16 20 C -0.09 -2.46 10.04 22.22 0.22 -2.24 16 21 C -0.18 -5.79 10.05 22.25 0.22 -5.57 16 22 C -0.10 -3.66 9.02 22.30 0.20 -3.45 16 23 C -0.16 -5.29 5.43 -19.74 -0.11 -5.40 16 24 H 0.02 0.56 8.14 -2.39 -0.02 0.54 16 25 H 0.06 2.40 6.76 -2.38 -0.02 2.39 16 26 H 0.08 2.37 6.32 -2.39 -0.02 2.35 16 27 H -0.04 -2.02 8.12 -2.39 -0.02 -2.04 16 28 H 0.00 -0.03 7.93 -2.39 -0.02 -0.05 16 29 H 0.26 14.97 8.31 -92.71 -0.77 14.20 16 30 H 0.04 1.23 8.11 -2.39 -0.02 1.21 16 31 H 0.05 1.98 7.92 -2.39 -0.02 1.96 16 32 H 0.11 1.77 8.14 -2.39 -0.02 1.75 16 33 H 0.07 1.63 8.10 -2.39 -0.02 1.61 16 34 H 0.13 1.73 8.14 -2.39 -0.02 1.71 16 35 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 36 H 0.14 3.26 8.06 -2.91 -0.02 3.23 16 37 H 0.15 3.08 8.06 -2.91 -0.02 3.06 16 38 H 0.12 3.76 8.06 -2.92 -0.02 3.73 16 39 H 0.16 6.75 4.78 -2.91 -0.01 6.74 16 Total: -1.00 -64.74 310.03 5.21 -59.53 By element: Atomic # 1 Polarization: 14.47 SS G_CDS: 1.03 Total: 15.50 kcal Atomic # 6 Polarization: -35.96 SS G_CDS: 4.16 Total: -31.80 kcal Atomic # 7 Polarization: -78.27 SS G_CDS: -1.06 Total: -79.32 kcal Atomic # 8 Polarization: -8.89 SS G_CDS: -0.94 Total: -9.83 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 2.03 Total: 45.93 kcal Total: -64.74 5.21 -59.53 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000162439735.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.229 kcal (2) G-P(sol) polarization free energy of solvation -64.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.530 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds