Wall clock time and date at job start Mon Mar 30 2020 06:40:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46898 * 110.99969 * 2 1 4 4 C 1.50703 * 109.46949 * 293.95220 * 3 2 1 5 5 H 1.08003 * 119.99904 * 0.02562 * 4 3 2 6 6 C 1.37875 * 119.99952 * 180.02562 * 4 3 2 7 7 N 1.31518 * 119.99750 * 179.97438 * 6 4 3 8 8 Si 1.86798 * 120.00076 * 359.97438 * 6 4 3 9 9 H 1.48504 * 109.46855 * 90.00460 * 8 6 4 10 10 H 1.48502 * 109.47133 * 209.99667 * 8 6 4 11 11 H 1.48498 * 109.47226 * 330.00232 * 8 6 4 12 12 C 1.46898 * 111.00043 * 123.95150 * 2 1 3 13 13 C 1.53002 * 109.47412 * 75.54021 * 12 2 1 14 14 H 1.08999 * 109.43764 * 303.55221 * 13 12 2 15 15 C 1.53071 * 109.43871 * 63.38652 * 13 12 2 16 16 C 1.53408 * 108.29799 * 168.24208 * 15 13 12 17 17 O 1.42822 * 108.41305 * 295.34758 * 16 15 13 18 18 C 1.35841 * 117.86008 * 49.16758 * 17 16 15 19 19 C 1.39148 * 118.50142 * 162.78474 * 18 17 16 20 20 C 1.37973 * 120.21439 * 179.82048 * 19 18 17 21 21 C 1.38292 * 119.95985 * 359.97245 * 20 19 18 22 22 C 1.38105 * 119.98259 * 0.07852 * 21 20 19 23 23 C 1.38373 * 121.80533 * 342.74814 * 18 17 16 24 24 H 1.09006 * 109.47303 * 297.45457 * 1 2 3 25 25 H 1.09002 * 109.47206 * 57.45383 * 1 2 3 26 26 H 1.08996 * 109.47078 * 177.45370 * 1 2 3 27 27 H 1.08997 * 109.47720 * 53.95118 * 3 2 1 28 28 H 1.09004 * 109.47287 * 173.95778 * 3 2 1 29 29 H 0.96999 * 119.99671 * 180.02562 * 7 6 4 30 30 H 1.09000 * 109.47012 * 315.54395 * 12 2 1 31 31 H 1.08996 * 109.47488 * 195.54505 * 12 2 1 32 32 H 1.09000 * 109.66931 * 48.55659 * 15 13 12 33 33 H 1.09003 * 109.72123 * 287.95867 * 15 13 12 34 34 H 1.09001 * 109.67740 * 175.60602 * 16 15 13 35 35 H 1.08995 * 109.68218 * 55.09465 * 16 15 13 36 36 H 1.08000 * 119.89186 * 359.80779 * 19 18 17 37 37 H 1.08001 * 120.01818 * 179.97438 * 20 19 18 38 38 H 1.07994 * 120.00344 * 180.02562 * 21 20 19 39 39 H 1.07994 * 119.83928 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6369 2.0471 -1.2985 5 1 1.0739 1.5114 -2.0485 6 6 2.0276 3.3491 -1.5290 7 7 1.7152 3.9385 -2.6624 8 14 3.0008 4.2758 -0.2315 9 1 4.4532 4.0624 -0.4558 10 1 2.6935 5.7257 -0.3240 11 1 2.6294 3.7761 1.1167 12 6 1.9954 -0.7659 1.1376 13 6 1.8420 -2.2626 0.8596 14 1 0.7951 -2.4884 0.6566 15 6 2.6888 -2.6442 -0.3571 16 6 2.7556 -4.1748 -0.4365 17 8 3.4519 -4.6562 0.7138 18 6 3.0665 -4.1903 1.9302 19 6 3.4607 -4.8920 3.0654 20 6 3.0921 -4.4483 4.3187 21 6 2.3289 -3.3025 4.4489 22 6 1.9349 -2.6041 3.3245 23 6 2.2998 -3.0461 2.0635 24 1 -0.3634 0.4738 0.9120 25 1 -0.3634 0.5529 -0.8663 26 1 -0.3633 -1.0266 -0.0457 27 1 1.5611 1.9274 0.8308 28 1 3.0798 1.3444 0.1082 29 1 1.9904 4.8544 -2.8247 30 1 1.4408 -0.5051 2.0390 31 1 3.0499 -0.5288 1.2785 32 1 3.6941 -2.2378 -0.2465 33 1 2.2297 -2.2490 -1.2633 34 1 3.2886 -4.4725 -1.3395 35 1 1.7464 -4.5859 -0.4536 36 1 4.0569 -5.7869 2.9649 37 1 3.3995 -4.9956 5.1976 38 1 2.0404 -2.9543 5.4297 39 1 1.3393 -1.7094 3.4288 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000162439861.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:30 Heat of formation + Delta-G solvation = -11.672217 kcal Electronic energy + Delta-G solvation = -19635.169720 eV Core-core repulsion = 16735.727425 eV Total energy + Delta-G solvation = -2899.442295 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.72915 -37.45873 -37.19839 -34.17171 -32.31932 -30.61005 -30.18958 -28.37623 -27.20915 -24.95994 -23.79434 -22.92057 -21.59510 -20.15923 -19.54078 -17.79350 -16.86031 -16.60143 -16.01866 -15.09365 -14.78330 -14.53885 -14.44293 -14.06763 -13.68260 -13.51961 -13.16252 -12.98769 -12.75960 -12.37850 -12.12319 -11.86970 -11.59325 -11.40182 -11.10325 -10.93993 -10.78236 -10.66487 -10.46423 -10.30328 -10.17514 -9.84563 -9.31217 -8.77620 -8.58987 -8.12617 -7.40919 -6.07511 -4.04876 1.31154 1.42794 3.26794 3.33936 3.34423 3.36208 3.75439 4.39987 4.51456 4.75879 4.85398 4.92408 4.99614 5.12668 5.24681 5.28596 5.33355 5.36822 5.49279 5.55379 5.61637 5.88297 5.95405 6.00392 6.01960 6.11480 6.22854 6.26251 6.36403 6.43331 6.50147 6.58095 6.65283 6.79514 6.83623 6.97110 7.48229 7.55990 7.85855 8.01198 8.62842 9.00558 9.54396 11.05555 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.027624 B = 0.004856 C = 0.004526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1013.370356 B = 5764.674509 C = 6184.927509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 N -0.530 5.530 3 C 0.162 3.838 4 C -0.509 4.509 5 H 0.081 0.919 6 C 0.069 3.931 7 N -0.900 5.900 8 Si 0.874 3.126 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.269 1.269 12 C 0.062 3.938 13 C -0.040 4.040 14 H 0.082 0.918 15 C -0.141 4.141 16 C 0.059 3.941 17 O -0.320 6.320 18 C 0.134 3.866 19 C -0.154 4.154 20 C -0.094 4.094 21 C -0.156 4.156 22 C -0.084 4.084 23 C -0.147 4.147 24 H 0.011 0.989 25 H 0.080 0.920 26 H 0.047 0.953 27 H -0.012 1.012 28 H 0.023 0.977 29 H 0.264 0.736 30 H 0.030 0.970 31 H 0.068 0.932 32 H 0.075 0.925 33 H 0.099 0.901 34 H 0.106 0.894 35 H 0.061 0.939 36 H 0.126 0.874 37 H 0.124 0.876 38 H 0.120 0.880 39 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.998 -16.574 11.302 20.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 N -0.253 5.253 3 C 0.036 3.964 4 C -0.547 4.547 5 H 0.099 0.901 6 C -0.133 4.133 7 N -0.539 5.539 8 Si 0.701 3.299 9 H -0.201 1.201 10 H -0.212 1.212 11 H -0.193 1.193 12 C -0.066 4.066 13 C -0.058 4.058 14 H 0.100 0.900 15 C -0.179 4.179 16 C -0.016 4.016 17 O -0.235 6.235 18 C 0.089 3.911 19 C -0.173 4.173 20 C -0.112 4.112 21 C -0.174 4.174 22 C -0.102 4.102 23 C -0.148 4.148 24 H 0.030 0.970 25 H 0.099 0.901 26 H 0.066 0.934 27 H 0.005 0.995 28 H 0.041 0.959 29 H 0.073 0.927 30 H 0.048 0.952 31 H 0.086 0.914 32 H 0.094 0.906 33 H 0.118 0.882 34 H 0.124 0.876 35 H 0.079 0.921 36 H 0.144 0.856 37 H 0.142 0.858 38 H 0.138 0.862 39 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 1.322 -16.743 10.704 19.916 hybrid contribution 0.119 1.259 1.336 1.840 sum 1.441 -15.484 12.040 19.666 Atomic orbital electron populations 1.22286 0.88318 0.99673 1.01028 1.61868 1.07288 1.16370 1.39774 1.20200 0.94830 0.84102 0.97292 1.21024 1.35629 0.97212 1.00839 0.90106 1.24891 0.95781 0.97363 0.95249 1.69893 1.46884 1.13326 1.23826 0.86885 0.80945 0.79327 0.82739 1.20125 1.21178 1.19343 1.22160 1.00279 0.91717 0.92491 1.20024 0.99778 0.94674 0.91369 0.90009 1.22144 1.01695 0.93989 1.00061 1.23087 0.96968 0.95249 0.86301 1.85950 1.58397 1.66293 1.12818 1.18718 0.94927 0.92138 0.85303 1.20560 1.04936 1.01271 0.90544 1.20870 0.97551 0.96401 0.96342 1.21002 1.01172 0.96785 0.98473 1.21029 0.98643 0.99202 0.91358 1.19958 1.02476 0.96170 0.96191 0.97012 0.90131 0.93436 0.99451 0.95889 0.92656 0.95216 0.91359 0.90635 0.88207 0.87606 0.92107 0.85571 0.85786 0.86158 0.85718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.65 9.20 60.06 0.55 1.21 16 2 N -0.53 -10.65 4.30 -244.37 -1.05 -11.70 16 3 C 0.16 3.88 3.77 -4.98 -0.02 3.86 16 4 C -0.51 -14.25 9.03 -34.44 -0.31 -14.56 16 5 H 0.08 2.45 7.36 -52.48 -0.39 2.06 16 6 C 0.07 1.97 5.47 -17.82 -0.10 1.88 16 7 N -0.90 -27.37 13.96 55.43 0.77 -26.60 16 8 Si 0.87 21.45 27.47 -169.99 -4.67 16.78 16 9 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 10 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 11 H -0.27 -6.39 6.54 56.52 0.37 -6.02 16 12 C 0.06 1.05 4.02 -3.82 -0.02 1.03 16 13 C -0.04 -0.57 2.42 -91.70 -0.22 -0.80 16 14 H 0.08 1.16 6.79 -51.93 -0.35 0.81 16 15 C -0.14 -1.98 5.23 -26.48 -0.14 -2.12 16 16 C 0.06 0.70 7.02 37.37 0.26 0.96 16 17 O -0.32 -4.43 10.27 -19.24 -0.20 -4.63 16 18 C 0.13 1.86 6.47 -39.19 -0.25 1.61 16 19 C -0.15 -1.87 9.94 -39.34 -0.39 -2.26 16 20 C -0.09 -1.00 10.04 -39.66 -0.40 -1.40 16 21 C -0.16 -1.75 10.04 -39.61 -0.40 -2.15 16 22 C -0.08 -1.08 9.10 -39.53 -0.36 -1.44 16 23 C -0.15 -2.04 5.43 -104.44 -0.57 -2.61 16 24 H 0.01 0.21 8.11 -51.93 -0.42 -0.21 16 25 H 0.08 1.66 6.79 -51.93 -0.35 1.31 16 26 H 0.05 0.74 6.77 -51.93 -0.35 0.39 16 27 H -0.01 -0.30 7.18 -51.93 -0.37 -0.67 16 28 H 0.02 0.56 7.26 -51.93 -0.38 0.18 16 29 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 30 H 0.03 0.48 6.19 -51.93 -0.32 0.16 16 31 H 0.07 1.20 7.73 -51.93 -0.40 0.80 16 32 H 0.07 1.15 8.09 -51.93 -0.42 0.73 16 33 H 0.10 1.47 8.06 -51.93 -0.42 1.06 16 34 H 0.11 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.13 1.31 8.06 -52.49 -0.42 0.89 16 37 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 38 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 39 H 0.12 1.52 6.40 -52.49 -0.34 1.18 16 LS Contribution 309.44 15.07 4.66 4.66 Total: -1.00 -30.54 309.44 -8.63 -39.17 By element: Atomic # 1 Polarization: 4.89 SS G_CDS: -5.79 Total: -0.91 kcal Atomic # 6 Polarization: -14.42 SS G_CDS: -2.36 Total: -16.77 kcal Atomic # 7 Polarization: -38.02 SS G_CDS: -0.28 Total: -38.30 kcal Atomic # 8 Polarization: -4.43 SS G_CDS: -0.20 Total: -4.63 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -4.67 Total: 16.78 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -30.54 -8.63 -39.17 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000162439861.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.496 kcal (2) G-P(sol) polarization free energy of solvation -30.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds