Wall clock time and date at job start Mon Mar 30 2020 06:40:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46898 * 110.99969 * 2 1 4 4 C 1.50703 * 109.46949 * 293.95220 * 3 2 1 5 5 H 1.08003 * 119.99904 * 0.02562 * 4 3 2 6 6 C 1.37875 * 119.99952 * 180.02562 * 4 3 2 7 7 N 1.31518 * 119.99750 * 179.97438 * 6 4 3 8 8 Si 1.86798 * 120.00076 * 359.97438 * 6 4 3 9 9 H 1.48504 * 109.46855 * 90.00460 * 8 6 4 10 10 H 1.48502 * 109.47133 * 209.99667 * 8 6 4 11 11 H 1.48498 * 109.47226 * 330.00232 * 8 6 4 12 12 C 1.46898 * 111.00043 * 123.95150 * 2 1 3 13 13 C 1.53002 * 109.47412 * 75.54021 * 12 2 1 14 14 H 1.08999 * 109.43764 * 303.55221 * 13 12 2 15 15 C 1.53071 * 109.43871 * 63.38652 * 13 12 2 16 16 C 1.53408 * 108.29799 * 168.24208 * 15 13 12 17 17 O 1.42822 * 108.41305 * 295.34758 * 16 15 13 18 18 C 1.35841 * 117.86008 * 49.16758 * 17 16 15 19 19 C 1.39148 * 118.50142 * 162.78474 * 18 17 16 20 20 C 1.37973 * 120.21439 * 179.82048 * 19 18 17 21 21 C 1.38292 * 119.95985 * 359.97245 * 20 19 18 22 22 C 1.38105 * 119.98259 * 0.07852 * 21 20 19 23 23 C 1.38373 * 121.80533 * 342.74814 * 18 17 16 24 24 H 1.09006 * 109.47303 * 297.45457 * 1 2 3 25 25 H 1.09002 * 109.47206 * 57.45383 * 1 2 3 26 26 H 1.08996 * 109.47078 * 177.45370 * 1 2 3 27 27 H 1.08997 * 109.47720 * 53.95118 * 3 2 1 28 28 H 1.09004 * 109.47287 * 173.95778 * 3 2 1 29 29 H 0.96999 * 119.99671 * 180.02562 * 7 6 4 30 30 H 1.09000 * 109.47012 * 315.54395 * 12 2 1 31 31 H 1.08996 * 109.47488 * 195.54505 * 12 2 1 32 32 H 1.09000 * 109.66931 * 48.55659 * 15 13 12 33 33 H 1.09003 * 109.72123 * 287.95867 * 15 13 12 34 34 H 1.09001 * 109.67740 * 175.60602 * 16 15 13 35 35 H 1.08995 * 109.68218 * 55.09465 * 16 15 13 36 36 H 1.08000 * 119.89186 * 359.80779 * 19 18 17 37 37 H 1.08001 * 120.01818 * 179.97438 * 20 19 18 38 38 H 1.07994 * 120.00344 * 180.02562 * 21 20 19 39 39 H 1.07994 * 119.83928 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6369 2.0471 -1.2985 5 1 1.0739 1.5114 -2.0485 6 6 2.0276 3.3491 -1.5290 7 7 1.7152 3.9385 -2.6624 8 14 3.0008 4.2758 -0.2315 9 1 4.4532 4.0624 -0.4558 10 1 2.6935 5.7257 -0.3240 11 1 2.6294 3.7761 1.1167 12 6 1.9954 -0.7659 1.1376 13 6 1.8420 -2.2626 0.8596 14 1 0.7951 -2.4884 0.6566 15 6 2.6888 -2.6442 -0.3571 16 6 2.7556 -4.1748 -0.4365 17 8 3.4519 -4.6562 0.7138 18 6 3.0665 -4.1903 1.9302 19 6 3.4607 -4.8920 3.0654 20 6 3.0921 -4.4483 4.3187 21 6 2.3289 -3.3025 4.4489 22 6 1.9349 -2.6041 3.3245 23 6 2.2998 -3.0461 2.0635 24 1 -0.3634 0.4738 0.9120 25 1 -0.3634 0.5529 -0.8663 26 1 -0.3633 -1.0266 -0.0457 27 1 1.5611 1.9274 0.8308 28 1 3.0798 1.3444 0.1082 29 1 1.9904 4.8544 -2.8247 30 1 1.4408 -0.5051 2.0390 31 1 3.0499 -0.5288 1.2785 32 1 3.6941 -2.2378 -0.2465 33 1 2.2297 -2.2490 -1.2633 34 1 3.2886 -4.4725 -1.3395 35 1 1.7464 -4.5859 -0.4536 36 1 4.0569 -5.7869 2.9649 37 1 3.3995 -4.9956 5.1976 38 1 2.0404 -2.9543 5.4297 39 1 1.3393 -1.7094 3.4288 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000162439861.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:29 Heat of formation + Delta-G solvation = -30.490812 kcal Electronic energy + Delta-G solvation = -19635.985755 eV Core-core repulsion = 16735.727425 eV Total energy + Delta-G solvation = -2900.258330 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.72582 -38.70005 -38.36489 -35.58223 -34.33306 -31.56516 -31.12958 -30.16872 -28.62825 -26.46672 -24.85888 -24.11237 -22.94957 -21.69283 -20.64284 -18.98391 -18.74718 -17.60631 -17.07423 -16.60124 -16.21510 -15.92596 -15.79567 -15.15773 -15.07520 -14.72435 -14.46200 -14.36589 -14.10508 -13.85804 -13.51909 -13.17494 -12.92965 -12.72754 -12.47031 -12.41604 -12.37042 -11.97324 -11.87326 -11.75844 -11.56946 -11.51368 -11.11009 -10.79113 -9.71930 -9.10181 -9.00459 -8.29103 -6.32030 0.39350 0.50618 1.33663 1.34117 1.44633 2.32954 2.40975 2.82812 3.03965 3.15817 3.70482 3.76407 3.89035 3.93773 4.22643 4.26240 4.29932 4.36902 4.43644 4.55666 4.56763 4.64034 4.66202 4.74797 4.83489 4.85850 4.93676 5.02247 5.10606 5.16016 5.22108 5.30917 5.40808 5.51693 5.57909 5.63866 5.91472 5.97149 6.33992 6.51902 6.62430 6.74329 7.31647 8.87311 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.027624 B = 0.004856 C = 0.004526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1013.370356 B = 5764.674509 C = 6184.927509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 N -0.541 5.541 3 C 0.172 3.828 4 C -0.514 4.514 5 H 0.042 0.958 6 C 0.010 3.990 7 N -0.947 5.947 8 Si 0.943 3.057 9 H -0.267 1.267 10 H -0.281 1.281 11 H -0.253 1.253 12 C 0.067 3.933 13 C -0.032 4.032 14 H 0.085 0.915 15 C -0.139 4.139 16 C 0.062 3.938 17 O -0.332 6.332 18 C 0.113 3.887 19 C -0.162 4.162 20 C -0.087 4.087 21 C -0.156 4.156 22 C -0.097 4.097 23 C -0.163 4.163 24 H 0.019 0.981 25 H 0.050 0.950 26 H 0.078 0.922 27 H -0.013 1.013 28 H 0.024 0.976 29 H 0.267 0.733 30 H 0.042 0.958 31 H 0.058 0.942 32 H 0.058 0.942 33 H 0.087 0.913 34 H 0.126 0.874 35 H 0.072 0.928 36 H 0.140 0.860 37 H 0.157 0.843 38 H 0.145 0.855 39 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.621 -17.828 14.014 22.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 N -0.264 5.264 3 C 0.044 3.956 4 C -0.552 4.552 5 H 0.060 0.940 6 C -0.187 4.187 7 N -0.588 5.588 8 Si 0.767 3.233 9 H -0.192 1.192 10 H -0.206 1.206 11 H -0.177 1.177 12 C -0.061 4.061 13 C -0.050 4.050 14 H 0.103 0.897 15 C -0.177 4.177 16 C -0.012 4.012 17 O -0.246 6.246 18 C 0.068 3.932 19 C -0.181 4.181 20 C -0.105 4.105 21 C -0.174 4.174 22 C -0.115 4.115 23 C -0.165 4.165 24 H 0.037 0.963 25 H 0.069 0.931 26 H 0.097 0.903 27 H 0.004 0.996 28 H 0.042 0.958 29 H 0.076 0.924 30 H 0.060 0.940 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.106 0.894 34 H 0.143 0.857 35 H 0.090 0.910 36 H 0.158 0.842 37 H 0.174 0.826 38 H 0.163 0.837 39 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 1.937 -18.023 13.428 22.559 hybrid contribution -0.118 1.559 0.487 1.638 sum 1.820 -16.464 13.914 21.633 Atomic orbital electron populations 1.22235 0.87382 1.01248 0.99934 1.61760 1.08232 1.14427 1.42002 1.19953 0.94832 0.85970 0.94797 1.21247 1.34788 0.97449 1.01716 0.94009 1.25791 0.96987 0.98439 0.97519 1.70041 1.48600 1.13944 1.26167 0.85778 0.79476 0.77824 0.80246 1.19173 1.20635 1.17729 1.22164 0.99524 0.92771 0.91608 1.19894 1.00049 0.92974 0.92096 0.89698 1.22065 1.00444 0.95758 0.99404 1.23167 0.97991 0.93442 0.86646 1.85931 1.58944 1.66507 1.13225 1.19005 0.95669 0.92735 0.85810 1.20877 1.04907 1.01673 0.90594 1.21274 0.96274 0.96073 0.96898 1.21344 1.00409 0.96548 0.99050 1.21180 0.99052 0.99692 0.91541 1.19919 1.03652 0.96670 0.96215 0.96272 0.93137 0.90337 0.99563 0.95836 0.92435 0.94040 0.92356 0.92355 0.89446 0.85659 0.90954 0.84189 0.82580 0.83683 0.85463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.48 9.20 127.69 1.17 2.65 16 2 N -0.54 -21.73 4.30 -927.05 -3.99 -25.72 16 3 C 0.17 8.22 3.77 85.56 0.32 8.54 16 4 C -0.51 -29.55 9.03 25.60 0.23 -29.32 16 5 H 0.04 2.66 7.36 -2.91 -0.02 2.64 16 6 C 0.01 0.58 5.47 84.65 0.46 1.05 16 7 N -0.95 -59.06 13.96 21.45 0.30 -58.76 16 8 Si 0.94 44.18 27.47 68.60 1.88 46.06 16 9 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 10 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 11 H -0.25 -11.16 6.54 99.48 0.65 -10.51 16 12 C 0.07 2.21 4.02 86.30 0.35 2.55 16 13 C -0.03 -0.88 2.42 -11.50 -0.03 -0.91 16 14 H 0.09 2.29 6.79 -2.39 -0.02 2.28 16 15 C -0.14 -3.87 5.23 30.76 0.16 -3.71 16 16 C 0.06 1.41 7.02 72.12 0.51 1.92 16 17 O -0.33 -8.78 10.27 -91.76 -0.94 -9.72 16 18 C 0.11 2.96 6.47 22.52 0.15 3.11 16 19 C -0.16 -3.52 9.94 22.43 0.22 -3.29 16 20 C -0.09 -1.57 10.04 22.22 0.22 -1.34 16 21 C -0.16 -2.98 10.04 22.25 0.22 -2.76 16 22 C -0.10 -2.27 9.10 22.30 0.20 -2.06 16 23 C -0.16 -4.32 5.43 -19.75 -0.11 -4.42 16 24 H 0.02 0.66 8.11 -2.38 -0.02 0.64 16 25 H 0.05 2.15 6.79 -2.39 -0.02 2.13 16 26 H 0.08 2.37 6.77 -2.39 -0.02 2.35 16 27 H -0.01 -0.64 7.18 -2.39 -0.02 -0.65 16 28 H 0.02 1.13 7.26 -2.38 -0.02 1.11 16 29 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16 30 H 0.04 1.27 6.19 -2.39 -0.01 1.25 16 31 H 0.06 2.02 7.73 -2.39 -0.02 2.00 16 32 H 0.06 1.80 8.09 -2.39 -0.02 1.78 16 33 H 0.09 2.62 8.06 -2.39 -0.02 2.60 16 34 H 0.13 2.30 8.14 -2.39 -0.02 2.28 16 35 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 36 H 0.14 2.56 8.06 -2.91 -0.02 2.53 16 37 H 0.16 1.75 8.06 -2.91 -0.02 1.73 16 38 H 0.15 2.02 8.06 -2.91 -0.02 2.00 16 39 H 0.13 2.83 6.40 -2.91 -0.02 2.81 16 Total: -1.00 -66.76 309.44 2.31 -64.45 By element: Atomic # 1 Polarization: 10.72 SS G_CDS: 0.97 Total: 11.69 kcal Atomic # 6 Polarization: -32.10 SS G_CDS: 4.09 Total: -28.01 kcal Atomic # 7 Polarization: -80.78 SS G_CDS: -3.69 Total: -84.47 kcal Atomic # 8 Polarization: -8.78 SS G_CDS: -0.94 Total: -9.72 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 1.88 Total: 46.06 kcal Total: -66.76 2.31 -64.45 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000162439861.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.956 kcal (2) G-P(sol) polarization free energy of solvation -66.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds