Wall clock time and date at job start Mon Mar 30 2020 06:20:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31006 * 1 3 3 C 1.50697 * 120.00037 * 2 1 4 4 C 1.52998 * 109.47078 * 125.00454 * 3 2 1 5 5 H 1.09000 * 109.46977 * 304.99658 * 4 3 2 6 6 C 1.53004 * 109.47138 * 184.99988 * 4 3 2 7 7 N 1.46898 * 109.47139 * 64.99685 * 4 3 2 8 8 C 1.46903 * 111.00085 * 205.00082 * 7 4 3 9 9 C 1.50700 * 109.47166 * 180.02562 * 8 7 4 10 10 C 1.38120 * 120.03058 * 259.95554 * 9 8 7 11 11 C 1.38287 * 120.06813 * 180.02562 * 10 9 8 12 12 C 1.38327 * 120.13531 * 0.02562 * 11 10 9 13 13 C 1.38073 * 120.06843 * 0.02562 * 12 11 10 14 14 C 1.38851 * 120.03966 * 79.99541 * 9 8 7 15 15 O 1.35762 * 120.06687 * 359.96259 * 14 9 8 16 16 C 1.34830 * 116.99794 * 174.42273 * 15 14 9 17 17 H 1.07994 * 120.00245 * 5.05908 * 16 15 14 18 18 C 1.38652 * 119.99573 * 185.06196 * 16 15 14 19 19 N 1.31561 * 120.00249 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 119.99913 * 179.97438 * 18 16 15 21 21 H 1.48505 * 109.47105 * 0.02562 * 20 18 16 22 22 H 1.48502 * 109.47447 * 119.99890 * 20 18 16 23 23 H 1.48505 * 109.47249 * 240.00015 * 20 18 16 24 24 H 1.08002 * 120.00258 * 180.02562 * 1 2 3 25 25 H 1.08002 * 119.99602 * 359.97438 * 1 2 3 26 26 H 1.08002 * 119.99602 * 180.02562 * 2 1 3 27 27 H 1.08997 * 109.47347 * 5.00106 * 3 2 1 28 28 H 1.09001 * 109.46952 * 245.00779 * 3 2 1 29 29 H 1.09000 * 109.47197 * 59.99588 * 6 4 3 30 30 H 1.08997 * 109.46895 * 180.02562 * 6 4 3 31 31 H 1.09000 * 109.46917 * 299.99707 * 6 4 3 32 32 H 1.00903 * 110.99874 * 81.05038 * 7 4 3 33 33 H 1.08994 * 109.47275 * 60.00079 * 8 7 4 34 34 H 1.08997 * 109.46854 * 300.00028 * 8 7 4 35 35 H 1.07996 * 119.97052 * 0.02562 * 10 9 8 36 36 H 1.08000 * 119.93139 * 180.27719 * 11 10 9 37 37 H 1.07997 * 119.96100 * 179.97438 * 12 11 10 38 38 H 1.08000 * 120.03012 * 180.02562 * 13 12 11 39 39 H 0.97001 * 119.99596 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 3.0352 1.3330 1.1815 5 1 2.4884 1.1468 2.1060 6 6 3.7093 2.7045 1.2552 7 7 4.0575 0.2939 0.9995 8 6 4.6208 -0.1224 2.2908 9 6 5.6639 -1.1862 2.0643 10 6 5.3479 -2.5166 2.2590 11 6 6.3046 -3.4934 2.0519 12 6 7.5806 -3.1416 1.6498 13 6 7.9028 -1.8133 1.4544 14 6 6.9437 -0.8300 1.6604 15 8 7.2573 0.4769 1.4682 16 6 8.5451 0.7627 1.1894 17 1 9.2571 -0.0367 1.0470 18 6 8.9552 2.0831 1.0855 19 7 8.0878 3.0570 1.2585 20 14 10.7396 2.4792 0.6999 21 1 11.5061 1.2160 0.5514 22 1 10.8126 3.2536 -0.5652 23 1 11.3185 3.2830 1.8063 24 1 -0.5401 -0.9353 0.0004 25 1 -0.5399 0.9354 0.0004 26 1 1.8500 -0.9354 -0.0004 27 1 1.3587 2.1316 0.0896 28 1 2.6212 1.4026 -0.9315 29 1 2.9507 3.4755 1.3902 30 1 4.4018 2.7242 2.0967 31 1 4.2560 2.8907 0.3308 32 1 4.7834 0.6068 0.3724 33 1 3.8266 -0.5204 2.9223 34 1 5.0789 0.7366 2.7811 35 1 4.3528 -2.7944 2.5734 36 1 6.0540 -4.5333 2.2005 37 1 8.3256 -3.9068 1.4892 38 1 8.8990 -1.5394 1.1400 39 1 8.3749 3.9807 1.1861 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000162630309.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:35 Heat of formation + Delta-G solvation = 5.222506 kcal Electronic energy + Delta-G solvation = -19488.634318 eV Core-core repulsion = 16589.924633 eV Total energy + Delta-G solvation = -2898.709685 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.19570 -37.24019 -36.31585 -33.92776 -32.30807 -31.51950 -29.18246 -28.42926 -26.29186 -25.39798 -24.15081 -21.58200 -20.57234 -20.42530 -19.43465 -17.93813 -16.83863 -15.60691 -15.10658 -14.78907 -14.64477 -14.31159 -14.00056 -13.64690 -13.52472 -13.24423 -13.01633 -12.62242 -12.29075 -11.96625 -11.87976 -11.69356 -11.34799 -11.31400 -11.04567 -10.86682 -10.69788 -10.63548 -10.49242 -10.41369 -10.38734 -9.32370 -9.09166 -8.85841 -8.11378 -7.73920 -7.18834 -6.47332 -4.05310 2.17971 2.40881 2.53416 3.10535 3.12675 3.17338 3.94967 4.49682 4.88335 5.07223 5.15039 5.25976 5.39675 5.44323 5.60906 5.63350 5.66098 5.78453 5.89885 5.90972 5.99367 6.10085 6.14834 6.25148 6.26789 6.32002 6.41332 6.50714 6.73813 6.74642 6.91564 6.94194 7.02240 7.12148 7.28809 7.39638 7.43808 7.63504 7.86268 7.95207 8.04582 8.99774 9.68530 10.70312 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.015415 B = 0.006651 C = 0.004874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1816.000581 B = 4208.632946 C = 5743.281789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.118 4.118 3 C -0.084 4.084 4 C 0.088 3.912 5 H 0.070 0.930 6 C -0.178 4.178 7 N -0.677 5.677 8 C 0.119 3.881 9 C -0.156 4.156 10 C -0.061 4.061 11 C -0.214 4.214 12 C -0.076 4.076 13 C -0.234 4.234 14 C 0.157 3.843 15 O -0.176 6.176 16 C -0.390 4.390 17 H 0.090 0.910 18 C 0.041 3.959 19 N -0.862 5.862 20 Si 0.937 3.063 21 H -0.268 1.268 22 H -0.277 1.277 23 H -0.277 1.277 24 H 0.090 0.910 25 H 0.088 0.912 26 H 0.116 0.884 27 H 0.062 0.938 28 H 0.072 0.928 29 H 0.049 0.951 30 H 0.063 0.937 31 H 0.060 0.940 32 H 0.351 0.649 33 H 0.062 0.938 34 H 0.042 0.958 35 H 0.110 0.890 36 H 0.104 0.896 37 H 0.105 0.895 38 H 0.125 0.875 39 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.778 -4.336 -0.276 8.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.263 4.263 2 C -0.136 4.136 3 C -0.122 4.122 4 C -0.022 4.022 5 H 0.088 0.912 6 C -0.237 4.237 7 N -0.308 5.308 8 C -0.009 4.009 9 C -0.157 4.157 10 C -0.080 4.080 11 C -0.233 4.233 12 C -0.094 4.094 13 C -0.253 4.253 14 C 0.104 3.896 15 O -0.080 6.080 16 C -0.467 4.467 17 H 0.108 0.892 18 C -0.163 4.163 19 N -0.497 5.497 20 Si 0.763 3.237 21 H -0.192 1.192 22 H -0.202 1.202 23 H -0.203 1.203 24 H 0.109 0.891 25 H 0.107 0.893 26 H 0.134 0.866 27 H 0.081 0.919 28 H 0.091 0.909 29 H 0.068 0.932 30 H 0.082 0.918 31 H 0.079 0.921 32 H 0.170 0.830 33 H 0.081 0.919 34 H 0.060 0.940 35 H 0.128 0.872 36 H 0.122 0.878 37 H 0.123 0.877 38 H 0.143 0.857 39 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -8.367 -4.368 -0.296 9.443 hybrid contribution 1.634 0.866 0.003 1.849 sum -6.734 -3.502 -0.292 7.595 Atomic orbital electron populations 1.23727 0.96088 1.01023 1.05419 1.23024 0.95220 0.99449 0.95892 1.20801 0.97383 0.94833 0.99160 1.21468 0.93121 0.90105 0.97525 0.91185 1.22448 1.00594 0.97169 1.03464 1.60787 1.17384 1.39765 1.12898 1.20497 0.94023 0.95533 0.90874 1.18858 0.92871 0.94294 1.09695 1.20532 0.97929 0.91498 0.98002 1.20591 0.94481 0.98092 1.10143 1.20748 0.95915 0.95255 0.97521 1.21150 1.00804 0.92819 1.10571 1.19216 0.92647 0.85444 0.92341 1.83943 1.29129 1.18484 1.76434 1.21333 0.83084 0.92970 1.49270 0.89223 1.25210 0.99837 0.94392 0.96847 1.70028 1.34095 0.99566 1.46011 0.85697 0.80792 0.78956 0.78296 1.19189 1.20229 1.20254 0.89144 0.89327 0.86625 0.91909 0.90913 0.93220 0.91784 0.92059 0.82968 0.91925 0.94025 0.87151 0.87776 0.87692 0.85688 0.92247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.23 -2.65 14.32 29.01 0.42 -2.24 16 2 C -0.12 -1.57 9.25 -36.03 -0.33 -1.90 16 3 C -0.08 -1.14 5.34 -27.89 -0.15 -1.29 16 4 C 0.09 1.36 2.58 -67.71 -0.17 1.19 16 5 H 0.07 1.05 7.80 -51.93 -0.40 0.65 16 6 C -0.18 -2.93 9.16 37.16 0.34 -2.59 16 7 N -0.68 -12.06 5.93 -107.99 -0.64 -12.71 16 8 C 0.12 2.25 5.28 -4.97 -0.03 2.23 16 9 C -0.16 -3.19 5.41 -104.44 -0.56 -3.76 16 10 C -0.06 -1.11 9.66 -39.61 -0.38 -1.49 16 11 C -0.21 -3.77 10.04 -39.53 -0.40 -4.17 16 12 C -0.08 -1.41 10.04 -39.61 -0.40 -1.81 16 13 C -0.23 -5.08 9.17 -39.40 -0.36 -5.44 16 14 C 0.16 3.68 6.62 -39.11 -0.26 3.42 16 15 O -0.18 -4.71 8.95 0.01 0.00 -4.71 16 16 C -0.39 -10.52 9.49 30.89 0.29 -10.22 16 17 H 0.09 2.29 5.20 -52.49 -0.27 2.01 16 18 C 0.04 1.09 5.49 -17.51 -0.10 1.00 16 19 N -0.86 -24.08 13.67 55.48 0.76 -23.33 16 20 Si 0.94 20.20 29.55 -169.99 -5.02 15.18 16 21 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 22 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 23 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 24 H 0.09 0.96 8.06 -52.49 -0.42 0.54 16 25 H 0.09 0.96 7.84 -52.49 -0.41 0.55 16 26 H 0.12 1.66 8.03 -52.49 -0.42 1.24 16 27 H 0.06 0.77 7.79 -51.93 -0.40 0.36 16 28 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 29 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.06 1.21 7.45 -51.93 -0.39 0.82 16 31 H 0.06 1.09 8.13 -51.93 -0.42 0.67 16 32 H 0.35 7.16 8.41 -39.29 -0.33 6.83 16 33 H 0.06 1.06 7.92 -51.93 -0.41 0.64 16 34 H 0.04 0.89 7.15 -51.93 -0.37 0.52 16 35 H 0.11 1.73 8.04 -52.49 -0.42 1.31 16 36 H 0.10 1.55 8.06 -52.49 -0.42 1.12 16 37 H 0.10 1.66 8.06 -52.49 -0.42 1.23 16 38 H 0.13 2.72 5.64 -52.49 -0.30 2.43 16 39 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 LS Contribution 329.46 15.07 4.96 4.96 Total: -1.00 -27.54 329.46 -7.84 -35.38 By element: Atomic # 1 Polarization: 18.10 SS G_CDS: -5.80 Total: 12.30 kcal Atomic # 6 Polarization: -24.99 SS G_CDS: -2.09 Total: -27.08 kcal Atomic # 7 Polarization: -36.15 SS G_CDS: 0.12 Total: -36.03 kcal Atomic # 8 Polarization: -4.71 SS G_CDS: 0.00 Total: -4.71 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -5.02 Total: 15.18 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -27.54 -7.84 -35.38 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000162630309.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.604 kcal (2) G-P(sol) polarization free energy of solvation -27.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.382 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds