Wall clock time and date at job start Mon Mar 30 2020 06:20:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31006 * 1 3 3 C 1.50697 * 120.00037 * 2 1 4 4 C 1.52998 * 109.47078 * 125.00454 * 3 2 1 5 5 H 1.09000 * 109.46977 * 304.99658 * 4 3 2 6 6 C 1.53004 * 109.47138 * 184.99988 * 4 3 2 7 7 N 1.46898 * 109.47139 * 64.99685 * 4 3 2 8 8 C 1.46903 * 111.00085 * 205.00082 * 7 4 3 9 9 C 1.50700 * 109.47166 * 180.02562 * 8 7 4 10 10 C 1.38120 * 120.03058 * 259.95554 * 9 8 7 11 11 C 1.38287 * 120.06813 * 180.02562 * 10 9 8 12 12 C 1.38327 * 120.13531 * 0.02562 * 11 10 9 13 13 C 1.38073 * 120.06843 * 0.02562 * 12 11 10 14 14 C 1.38851 * 120.03966 * 79.99541 * 9 8 7 15 15 O 1.35762 * 120.06687 * 359.96259 * 14 9 8 16 16 C 1.34830 * 116.99794 * 174.42273 * 15 14 9 17 17 H 1.07994 * 120.00245 * 5.05908 * 16 15 14 18 18 C 1.38652 * 119.99573 * 185.06196 * 16 15 14 19 19 N 1.31561 * 120.00249 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 119.99913 * 179.97438 * 18 16 15 21 21 H 1.48505 * 109.47105 * 0.02562 * 20 18 16 22 22 H 1.48502 * 109.47447 * 119.99890 * 20 18 16 23 23 H 1.48505 * 109.47249 * 240.00015 * 20 18 16 24 24 H 1.08002 * 120.00258 * 180.02562 * 1 2 3 25 25 H 1.08002 * 119.99602 * 359.97438 * 1 2 3 26 26 H 1.08002 * 119.99602 * 180.02562 * 2 1 3 27 27 H 1.08997 * 109.47347 * 5.00106 * 3 2 1 28 28 H 1.09001 * 109.46952 * 245.00779 * 3 2 1 29 29 H 1.09000 * 109.47197 * 59.99588 * 6 4 3 30 30 H 1.08997 * 109.46895 * 180.02562 * 6 4 3 31 31 H 1.09000 * 109.46917 * 299.99707 * 6 4 3 32 32 H 1.00903 * 110.99874 * 81.05038 * 7 4 3 33 33 H 1.08994 * 109.47275 * 60.00079 * 8 7 4 34 34 H 1.08997 * 109.46854 * 300.00028 * 8 7 4 35 35 H 1.07996 * 119.97052 * 0.02562 * 10 9 8 36 36 H 1.08000 * 119.93139 * 180.27719 * 11 10 9 37 37 H 1.07997 * 119.96100 * 179.97438 * 12 11 10 38 38 H 1.08000 * 120.03012 * 180.02562 * 13 12 11 39 39 H 0.97001 * 119.99596 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 3.0352 1.3330 1.1815 5 1 2.4884 1.1468 2.1060 6 6 3.7093 2.7045 1.2552 7 7 4.0575 0.2939 0.9995 8 6 4.6208 -0.1224 2.2908 9 6 5.6639 -1.1862 2.0643 10 6 5.3479 -2.5166 2.2590 11 6 6.3046 -3.4934 2.0519 12 6 7.5806 -3.1416 1.6498 13 6 7.9028 -1.8133 1.4544 14 6 6.9437 -0.8300 1.6604 15 8 7.2573 0.4769 1.4682 16 6 8.5451 0.7627 1.1894 17 1 9.2571 -0.0367 1.0470 18 6 8.9552 2.0831 1.0855 19 7 8.0878 3.0570 1.2585 20 14 10.7396 2.4792 0.6999 21 1 11.5061 1.2160 0.5514 22 1 10.8126 3.2536 -0.5652 23 1 11.3185 3.2830 1.8063 24 1 -0.5401 -0.9353 0.0004 25 1 -0.5399 0.9354 0.0004 26 1 1.8500 -0.9354 -0.0004 27 1 1.3587 2.1316 0.0896 28 1 2.6212 1.4026 -0.9315 29 1 2.9507 3.4755 1.3902 30 1 4.4018 2.7242 2.0967 31 1 4.2560 2.8907 0.3308 32 1 4.7834 0.6068 0.3724 33 1 3.8266 -0.5204 2.9223 34 1 5.0789 0.7366 2.7811 35 1 4.3528 -2.7944 2.5734 36 1 6.0540 -4.5333 2.2005 37 1 8.3256 -3.9068 1.4892 38 1 8.8990 -1.5394 1.1400 39 1 8.3749 3.9807 1.1861 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000162630309.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:35 Heat of formation + Delta-G solvation = -10.427574 kcal Electronic energy + Delta-G solvation = -19489.312957 eV Core-core repulsion = 16589.924633 eV Total energy + Delta-G solvation = -2899.388323 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.86494 -38.62991 -37.95883 -35.13897 -34.23694 -32.92155 -30.72365 -29.96600 -27.48977 -27.33963 -25.63959 -23.25652 -21.99388 -21.84865 -20.46875 -19.75523 -18.61503 -16.95914 -16.55116 -16.48911 -16.20822 -15.75301 -15.42493 -15.25830 -15.13586 -14.66964 -14.41008 -14.17326 -13.69826 -13.56173 -13.35761 -13.15647 -12.96274 -12.76161 -12.51808 -12.31214 -12.21134 -12.08979 -11.97792 -11.88058 -11.61567 -11.08116 -10.78422 -10.11310 -9.65426 -9.23731 -8.87952 -8.43985 -6.09629 0.61017 0.80998 1.34616 1.41587 1.50719 1.55474 2.17394 2.85794 3.14423 3.49421 3.58915 3.93128 4.09998 4.11693 4.23153 4.26123 4.35711 4.51112 4.53901 4.57485 4.66621 4.72357 4.77247 4.84676 4.93192 5.00050 5.14694 5.16377 5.21133 5.24285 5.34546 5.38399 5.71468 5.78000 5.83654 5.91948 6.00383 6.04615 6.22295 6.31774 6.41158 7.02018 7.82390 8.77492 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.015415 B = 0.006651 C = 0.004874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1816.000581 B = 4208.632946 C = 5743.281789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.140 4.140 3 C -0.076 4.076 4 C 0.090 3.910 5 H 0.081 0.919 6 C -0.169 4.169 7 N -0.670 5.670 8 C 0.126 3.874 9 C -0.164 4.164 10 C -0.060 4.060 11 C -0.194 4.194 12 C -0.077 4.077 13 C -0.252 4.252 14 C 0.119 3.881 15 O -0.216 6.216 16 C -0.410 4.410 17 H 0.094 0.906 18 C -0.015 4.015 19 N -0.910 5.910 20 Si 1.009 2.991 21 H -0.256 1.256 22 H -0.270 1.270 23 H -0.271 1.271 24 H 0.104 0.896 25 H 0.102 0.898 26 H 0.102 0.898 27 H 0.082 0.918 28 H 0.061 0.939 29 H 0.076 0.924 30 H 0.029 0.971 31 H 0.039 0.961 32 H 0.332 0.668 33 H 0.089 0.911 34 H 0.005 0.995 35 H 0.145 0.855 36 H 0.147 0.853 37 H 0.139 0.861 38 H 0.114 0.886 39 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.105 -6.665 -0.180 11.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.159 4.159 3 C -0.113 4.113 4 C -0.020 4.020 5 H 0.099 0.901 6 C -0.228 4.228 7 N -0.299 5.299 8 C -0.002 4.002 9 C -0.165 4.165 10 C -0.079 4.079 11 C -0.212 4.212 12 C -0.095 4.095 13 C -0.271 4.271 14 C 0.068 3.932 15 O -0.122 6.122 16 C -0.487 4.487 17 H 0.112 0.888 18 C -0.214 4.214 19 N -0.548 5.548 20 Si 0.830 3.170 21 H -0.179 1.179 22 H -0.195 1.195 23 H -0.197 1.197 24 H 0.122 0.878 25 H 0.120 0.880 26 H 0.120 0.880 27 H 0.101 0.899 28 H 0.079 0.921 29 H 0.095 0.905 30 H 0.048 0.952 31 H 0.058 0.942 32 H 0.149 0.851 33 H 0.107 0.893 34 H 0.023 0.977 35 H 0.162 0.838 36 H 0.165 0.835 37 H 0.157 0.843 38 H 0.131 0.869 39 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -9.720 -6.752 -0.189 11.836 hybrid contribution 1.860 1.336 0.030 2.290 sum -7.860 -5.416 -0.160 9.547 Atomic orbital electron populations 1.23937 0.95425 1.02346 1.02328 1.22866 0.95817 0.98463 0.98711 1.20711 0.97057 0.96138 0.97432 1.21571 0.92720 0.88519 0.99151 0.90128 1.22350 1.00445 0.99145 1.00809 1.60880 1.16693 1.40499 1.11809 1.20448 0.94270 0.94098 0.91424 1.19224 0.92151 0.95992 1.09169 1.20970 0.99790 0.90287 0.96832 1.21141 0.93363 1.00053 1.06665 1.21141 0.97493 0.94403 0.96463 1.21286 1.00173 0.94255 1.11384 1.19767 0.94443 0.84929 0.94048 1.83928 1.29019 1.20444 1.78827 1.21735 0.83769 0.93605 1.49562 0.88832 1.26343 1.04457 0.93945 0.96625 1.70171 1.36378 0.99895 1.48369 0.84648 0.75120 0.79020 0.78209 1.17945 1.19545 1.19660 0.87789 0.87971 0.87967 0.89913 0.92088 0.90468 0.95176 0.94182 0.85133 0.89278 0.97721 0.83760 0.83508 0.84321 0.86858 0.92208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -4.16 14.32 67.77 0.97 -3.19 16 2 C -0.14 -3.49 9.25 25.64 0.24 -3.25 16 3 C -0.08 -1.99 5.34 29.85 0.16 -1.84 16 4 C 0.09 2.81 2.58 44.92 0.12 2.93 16 5 H 0.08 2.36 7.80 -2.39 -0.02 2.34 16 6 C -0.17 -5.85 9.16 71.98 0.66 -5.19 16 7 N -0.67 -24.61 5.93 -495.58 -2.94 -27.55 16 8 C 0.13 4.89 5.28 85.56 0.45 5.35 16 9 C -0.16 -6.75 5.41 -19.75 -0.11 -6.86 16 10 C -0.06 -2.02 9.66 22.25 0.22 -1.81 16 11 C -0.19 -6.03 10.04 22.30 0.22 -5.80 16 12 C -0.08 -2.67 10.04 22.25 0.22 -2.45 16 13 C -0.25 -11.04 9.17 22.39 0.21 -10.84 16 14 C 0.12 5.79 6.62 22.57 0.15 5.94 16 15 O -0.22 -12.35 8.95 -22.87 -0.20 -12.55 16 16 C -0.41 -23.40 9.49 67.92 0.64 -22.76 16 17 H 0.09 5.03 5.20 -2.91 -0.02 5.01 16 18 C -0.02 -0.86 5.49 84.83 0.47 -0.39 16 19 N -0.91 -54.04 13.67 21.61 0.30 -53.74 16 20 Si 1.01 42.82 29.55 68.60 2.03 44.85 16 21 H -0.26 -10.18 7.11 99.48 0.71 -9.48 16 22 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 23 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 24 H 0.10 1.85 8.06 -2.91 -0.02 1.83 16 25 H 0.10 1.83 7.84 -2.91 -0.02 1.81 16 26 H 0.10 2.81 8.03 -2.91 -0.02 2.79 16 27 H 0.08 1.85 7.79 -2.39 -0.02 1.83 16 28 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 29 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 30 H 0.03 1.22 7.45 -2.39 -0.02 1.20 16 31 H 0.04 1.53 8.13 -2.39 -0.02 1.51 16 32 H 0.33 14.49 8.41 -89.69 -0.75 13.74 16 33 H 0.09 2.91 7.92 -2.39 -0.02 2.90 16 34 H 0.00 0.21 7.15 -2.39 -0.02 0.19 16 35 H 0.14 3.87 8.04 -2.91 -0.02 3.84 16 36 H 0.15 3.41 8.06 -2.91 -0.02 3.39 16 37 H 0.14 3.85 8.06 -2.91 -0.02 3.82 16 38 H 0.11 5.12 5.64 -2.91 -0.02 5.10 16 39 H 0.27 14.79 8.31 -92.71 -0.77 14.02 16 Total: -1.00 -64.28 329.46 4.07 -60.21 By element: Atomic # 1 Polarization: 38.67 SS G_CDS: 0.27 Total: 38.95 kcal Atomic # 6 Polarization: -54.78 SS G_CDS: 4.61 Total: -50.17 kcal Atomic # 7 Polarization: -78.65 SS G_CDS: -2.65 Total: -81.29 kcal Atomic # 8 Polarization: -12.35 SS G_CDS: -0.20 Total: -12.55 kcal Atomic # 14 Polarization: 42.82 SS G_CDS: 2.03 Total: 44.85 kcal Total: -64.28 4.07 -60.21 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000162630309.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.784 kcal (2) G-P(sol) polarization free energy of solvation -64.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.211 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds