Wall clock time and date at job start Mon Mar 30 2020 06:20:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50706 * 119.99480 * 2 1 4 4 C 1.53006 * 109.46920 * 125.00450 * 3 2 1 5 5 H 1.09000 * 109.46671 * 304.99901 * 4 3 2 6 6 C 1.52998 * 109.47007 * 185.00002 * 4 3 2 7 7 N 1.46898 * 109.47095 * 64.99862 * 4 3 2 8 8 C 1.46902 * 111.00020 * 204.99984 * 7 4 3 9 9 C 1.50697 * 109.47272 * 179.97438 * 8 7 4 10 10 C 1.38305 * 119.93136 * 269.72837 * 9 8 7 11 11 C 1.38105 * 120.06682 * 179.71991 * 10 9 8 12 12 C 1.38884 * 119.92766 * 0.57662 * 11 10 9 13 13 O 1.35752 * 120.06094 * 179.67805 * 12 11 10 14 14 C 1.34839 * 116.99404 * 174.48300 * 13 12 11 15 15 H 1.08006 * 119.99939 * 5.06066 * 14 13 12 16 16 C 1.38646 * 120.00079 * 185.05644 * 14 13 12 17 17 N 1.31559 * 120.00577 * 180.02562 * 16 14 13 18 18 Si 1.86806 * 119.99989 * 0.02562 * 16 14 13 19 19 H 1.48498 * 109.47181 * 89.99863 * 18 16 14 20 20 H 1.48497 * 109.47110 * 210.00265 * 18 16 14 21 21 H 1.48504 * 109.46974 * 330.00103 * 18 16 14 22 22 C 1.38873 * 119.86313 * 359.69672 * 12 11 10 23 23 C 1.38092 * 119.93314 * 0.02562 * 22 12 11 24 24 H 1.08006 * 119.99744 * 179.97438 * 1 2 3 25 25 H 1.07995 * 120.00486 * 359.97438 * 1 2 3 26 26 H 1.07995 * 120.00486 * 180.02562 * 2 1 3 27 27 H 1.08992 * 109.47290 * 5.00295 * 3 2 1 28 28 H 1.08999 * 109.47248 * 245.00053 * 3 2 1 29 29 H 1.09000 * 109.47323 * 299.99500 * 6 4 3 30 30 H 1.08996 * 109.47438 * 59.99968 * 6 4 3 31 31 H 1.09002 * 109.46662 * 179.97438 * 6 4 3 32 32 H 1.00897 * 110.99904 * 81.04556 * 7 4 3 33 33 H 1.08999 * 109.47302 * 300.00224 * 8 7 4 34 34 H 1.09004 * 109.46876 * 59.99934 * 8 7 4 35 35 H 1.07994 * 119.96661 * 359.97438 * 10 9 8 36 36 H 1.07996 * 120.03339 * 180.26834 * 11 10 9 37 37 H 0.96995 * 120.00562 * 179.97438 * 17 16 14 38 38 H 1.08002 * 120.03512 * 179.97438 * 22 12 11 39 39 H 1.08001 * 119.96812 * 179.97438 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 6 3.0350 1.3332 1.1816 5 1 2.4883 1.1469 2.1060 6 6 3.7090 2.7047 1.2553 7 7 4.0574 0.2942 0.9995 8 6 4.6208 -0.1220 2.2908 9 6 5.6631 -1.1866 2.0644 10 6 5.2977 -2.5205 2.0616 11 6 6.2497 -3.4982 1.8486 12 6 7.5769 -3.1412 1.6491 13 8 8.5159 -4.1004 1.4460 14 6 9.7623 -3.6828 1.1456 15 1 9.9958 -2.6283 1.1563 16 6 10.7442 -4.6070 0.8231 17 7 11.9604 -4.1997 0.5305 18 14 10.3402 -6.4307 0.8040 19 1 9.8769 -6.8210 -0.5518 20 1 11.5540 -7.2104 1.1559 21 1 9.2682 -6.7106 1.7929 22 6 7.9415 -1.8012 1.6581 23 6 6.9840 -0.8280 1.8659 24 1 -0.5400 -0.9354 -0.0004 25 1 -0.5401 0.9352 0.0004 26 1 1.8500 -0.9352 -0.0004 27 1 1.3585 2.1316 0.0896 28 1 2.6212 1.4028 -0.9314 29 1 4.2558 2.8910 0.3309 30 1 2.9504 3.4756 1.3904 31 1 4.4009 2.7248 2.0973 32 1 4.7832 0.6072 0.3724 33 1 5.0788 0.7369 2.7813 34 1 3.8265 -0.5201 2.9223 35 1 4.2664 -2.7977 2.2220 36 1 5.9630 -4.5394 1.8422 37 1 12.6474 -4.8463 0.3052 38 1 8.9729 -1.5205 1.5036 39 1 7.2670 0.2142 1.8734 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000162636878.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:39 Heat of formation + Delta-G solvation = 7.310137 kcal Electronic energy + Delta-G solvation = -18603.820742 eV Core-core repulsion = 15705.201584 eV Total energy + Delta-G solvation = -2898.619158 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.25676 -37.96570 -36.58834 -34.09582 -32.42857 -31.39129 -30.23640 -28.58297 -26.77686 -25.53820 -23.83996 -22.06365 -21.10979 -20.39203 -19.72446 -17.87930 -17.29523 -16.01587 -15.40894 -15.12314 -14.64545 -14.55312 -13.95871 -13.85352 -13.77828 -13.48033 -13.27687 -12.76708 -12.62807 -12.53168 -12.38561 -12.15391 -11.76942 -11.55484 -11.25577 -11.18418 -10.89296 -10.76240 -10.67768 -10.57525 -10.15277 -9.38646 -9.37795 -8.87220 -8.34002 -8.23146 -7.31351 -6.41977 -4.08711 2.14208 2.19093 2.28438 3.22081 3.25942 3.40539 4.17693 4.23698 4.59267 4.70434 4.87223 4.92010 5.01923 5.10696 5.22635 5.24859 5.31265 5.40124 5.45684 5.60309 5.68358 5.70058 5.77117 5.87482 5.88597 5.94619 6.03635 6.13503 6.35458 6.58586 6.66524 6.74642 6.80003 7.00394 7.14275 7.26258 7.29653 7.47957 7.62264 7.79905 8.03863 8.93455 9.56118 10.65731 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.032879 B = 0.003621 C = 0.003425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 851.398710 B = 7730.982077 C = 8172.309335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.126 4.126 3 C -0.084 4.084 4 C 0.085 3.915 5 H 0.076 0.924 6 C -0.184 4.184 7 N -0.678 5.678 8 C 0.117 3.883 9 C -0.175 4.175 10 C -0.054 4.054 11 C -0.194 4.194 12 C 0.161 3.839 13 O -0.218 6.218 14 C -0.390 4.390 15 H 0.106 0.894 16 C 0.063 3.937 17 N -0.880 5.880 18 Si 0.905 3.095 19 H -0.273 1.273 20 H -0.282 1.282 21 H -0.259 1.259 22 C -0.222 4.222 23 C -0.068 4.068 24 H 0.093 0.907 25 H 0.089 0.911 26 H 0.117 0.883 27 H 0.064 0.936 28 H 0.072 0.928 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.055 0.945 32 H 0.342 0.658 33 H 0.028 0.972 34 H 0.070 0.930 35 H 0.113 0.887 36 H 0.116 0.884 37 H 0.279 0.721 38 H 0.132 0.868 39 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.375 10.149 1.265 20.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.255 4.255 2 C -0.144 4.144 3 C -0.121 4.121 4 C -0.025 4.025 5 H 0.094 0.906 6 C -0.243 4.243 7 N -0.309 5.309 8 C -0.012 4.012 9 C -0.176 4.176 10 C -0.073 4.073 11 C -0.213 4.213 12 C 0.109 3.891 13 O -0.123 6.123 14 C -0.465 4.465 15 H 0.123 0.877 16 C -0.140 4.140 17 N -0.518 5.518 18 Si 0.731 3.269 19 H -0.199 1.199 20 H -0.208 1.208 21 H -0.184 1.184 22 C -0.241 4.241 23 C -0.086 4.086 24 H 0.111 0.889 25 H 0.107 0.893 26 H 0.135 0.865 27 H 0.082 0.918 28 H 0.091 0.909 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.074 0.926 32 H 0.161 0.839 33 H 0.046 0.954 34 H 0.088 0.912 35 H 0.131 0.869 36 H 0.134 0.866 37 H 0.089 0.911 38 H 0.149 0.851 39 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -17.605 9.320 1.197 19.956 hybrid contribution 0.720 0.127 0.116 0.740 sum -16.885 9.447 1.313 19.392 Atomic orbital electron populations 1.23775 0.96102 1.01260 1.04386 1.22986 0.95310 0.99281 0.96788 1.20788 0.97372 0.95260 0.98702 1.21540 0.93301 0.89253 0.98416 0.90588 1.22526 1.01229 0.98399 1.02120 1.60672 1.17098 1.40094 1.13050 1.20658 0.95175 0.95023 0.90298 1.19200 0.93510 0.93834 1.11100 1.20466 0.97671 0.91779 0.97411 1.20228 0.90619 0.99495 1.10998 1.19141 0.88870 0.88162 0.92926 1.83578 1.18849 1.32372 1.77492 1.20767 0.82313 0.96185 1.47247 0.87664 1.24466 0.94006 1.00131 0.95390 1.69644 1.01783 1.35857 1.44561 0.86180 0.78295 0.82907 0.79518 1.19858 1.20799 1.18351 1.21232 1.00700 0.92485 1.09655 1.20641 0.92365 0.97938 0.97695 0.88899 0.89265 0.86456 0.91756 0.90912 0.92316 0.92281 0.92553 0.83898 0.95355 0.91199 0.86918 0.86601 0.91052 0.85060 0.87692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -2.00 14.32 29.02 0.42 -1.58 16 2 C -0.13 -1.27 9.25 -36.02 -0.33 -1.60 16 3 C -0.08 -0.76 5.34 -27.88 -0.15 -0.91 16 4 C 0.09 0.81 2.58 -67.71 -0.17 0.63 16 5 H 0.08 0.75 7.80 -51.93 -0.40 0.34 16 6 C -0.18 -1.54 9.16 37.16 0.34 -1.20 16 7 N -0.68 -7.85 5.93 -107.99 -0.64 -8.49 16 8 C 0.12 1.48 5.61 -4.98 -0.03 1.45 16 9 C -0.18 -2.82 5.40 -104.57 -0.56 -3.39 16 10 C -0.05 -0.93 9.69 -39.61 -0.38 -1.31 16 11 C -0.19 -3.86 9.99 -39.39 -0.39 -4.25 16 12 C 0.16 3.72 6.65 -39.11 -0.26 3.46 16 13 O -0.22 -5.78 8.59 0.02 0.00 -5.78 16 14 C -0.39 -11.00 9.95 30.88 0.31 -10.70 16 15 H 0.11 3.03 5.44 -52.48 -0.29 2.75 16 16 C 0.06 1.78 5.49 -17.52 -0.10 1.68 16 17 N -0.88 -25.49 13.96 55.48 0.77 -24.71 16 18 Si 0.91 21.74 28.62 -169.99 -4.86 16.87 16 19 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 20 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 21 H -0.26 -6.25 7.11 56.52 0.40 -5.85 16 22 C -0.22 -4.74 9.17 -39.40 -0.36 -5.10 16 23 C -0.07 -1.19 9.69 -39.61 -0.38 -1.58 16 24 H 0.09 0.80 8.06 -52.48 -0.42 0.38 16 25 H 0.09 0.72 7.84 -52.49 -0.41 0.31 16 26 H 0.12 1.35 8.03 -52.49 -0.42 0.93 16 27 H 0.06 0.51 7.79 -51.93 -0.40 0.10 16 28 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.06 0.49 8.13 -51.93 -0.42 0.06 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.06 0.50 7.45 -51.93 -0.39 0.11 16 32 H 0.34 4.06 8.46 -39.29 -0.33 3.73 16 33 H 0.03 0.34 7.38 -51.93 -0.38 -0.04 16 34 H 0.07 0.85 8.00 -51.93 -0.42 0.44 16 35 H 0.11 1.64 8.06 -52.49 -0.42 1.22 16 36 H 0.12 2.16 8.06 -52.49 -0.42 1.74 16 37 H 0.28 7.46 8.31 -40.82 -0.34 7.12 16 38 H 0.13 2.97 5.64 -52.49 -0.30 2.67 16 39 H 0.10 1.60 8.06 -52.49 -0.42 1.18 16 LS Contribution 329.49 15.07 4.97 4.97 Total: -1.00 -28.58 329.49 -7.67 -36.25 By element: Atomic # 1 Polarization: 11.11 SS G_CDS: -5.84 Total: 5.27 kcal Atomic # 6 Polarization: -22.32 SS G_CDS: -2.06 Total: -24.38 kcal Atomic # 7 Polarization: -33.33 SS G_CDS: 0.13 Total: -33.20 kcal Atomic # 8 Polarization: -5.78 SS G_CDS: 0.00 Total: -5.78 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -4.86 Total: 16.87 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -28.58 -7.67 -36.25 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000162636878.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.555 kcal (2) G-P(sol) polarization free energy of solvation -28.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.245 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds