Wall clock time and date at job start Mon Mar 30 2020 06:20:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50706 * 119.99480 * 2 1 4 4 C 1.53006 * 109.46920 * 125.00450 * 3 2 1 5 5 H 1.09000 * 109.46671 * 304.99901 * 4 3 2 6 6 C 1.52998 * 109.47007 * 185.00002 * 4 3 2 7 7 N 1.46898 * 109.47095 * 64.99862 * 4 3 2 8 8 C 1.46902 * 111.00020 * 204.99984 * 7 4 3 9 9 C 1.50697 * 109.47272 * 179.97438 * 8 7 4 10 10 C 1.38305 * 119.93136 * 269.72837 * 9 8 7 11 11 C 1.38105 * 120.06682 * 179.71991 * 10 9 8 12 12 C 1.38884 * 119.92766 * 0.57662 * 11 10 9 13 13 O 1.35752 * 120.06094 * 179.67805 * 12 11 10 14 14 C 1.34839 * 116.99404 * 174.48300 * 13 12 11 15 15 H 1.08006 * 119.99939 * 5.06066 * 14 13 12 16 16 C 1.38646 * 120.00079 * 185.05644 * 14 13 12 17 17 N 1.31559 * 120.00577 * 180.02562 * 16 14 13 18 18 Si 1.86806 * 119.99989 * 0.02562 * 16 14 13 19 19 H 1.48498 * 109.47181 * 89.99863 * 18 16 14 20 20 H 1.48497 * 109.47110 * 210.00265 * 18 16 14 21 21 H 1.48504 * 109.46974 * 330.00103 * 18 16 14 22 22 C 1.38873 * 119.86313 * 359.69672 * 12 11 10 23 23 C 1.38092 * 119.93314 * 0.02562 * 22 12 11 24 24 H 1.08006 * 119.99744 * 179.97438 * 1 2 3 25 25 H 1.07995 * 120.00486 * 359.97438 * 1 2 3 26 26 H 1.07995 * 120.00486 * 180.02562 * 2 1 3 27 27 H 1.08992 * 109.47290 * 5.00295 * 3 2 1 28 28 H 1.08999 * 109.47248 * 245.00053 * 3 2 1 29 29 H 1.09000 * 109.47323 * 299.99500 * 6 4 3 30 30 H 1.08996 * 109.47438 * 59.99968 * 6 4 3 31 31 H 1.09002 * 109.46662 * 179.97438 * 6 4 3 32 32 H 1.00897 * 110.99904 * 81.04556 * 7 4 3 33 33 H 1.08999 * 109.47302 * 300.00224 * 8 7 4 34 34 H 1.09004 * 109.46876 * 59.99934 * 8 7 4 35 35 H 1.07994 * 119.96661 * 359.97438 * 10 9 8 36 36 H 1.07996 * 120.03339 * 180.26834 * 11 10 9 37 37 H 0.96995 * 120.00562 * 179.97438 * 17 16 14 38 38 H 1.08002 * 120.03512 * 179.97438 * 22 12 11 39 39 H 1.08001 * 119.96812 * 179.97438 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 6 3.0350 1.3332 1.1816 5 1 2.4883 1.1469 2.1060 6 6 3.7090 2.7047 1.2553 7 7 4.0574 0.2942 0.9995 8 6 4.6208 -0.1220 2.2908 9 6 5.6631 -1.1866 2.0644 10 6 5.2977 -2.5205 2.0616 11 6 6.2497 -3.4982 1.8486 12 6 7.5769 -3.1412 1.6491 13 8 8.5159 -4.1004 1.4460 14 6 9.7623 -3.6828 1.1456 15 1 9.9958 -2.6283 1.1563 16 6 10.7442 -4.6070 0.8231 17 7 11.9604 -4.1997 0.5305 18 14 10.3402 -6.4307 0.8040 19 1 9.8769 -6.8210 -0.5518 20 1 11.5540 -7.2104 1.1559 21 1 9.2682 -6.7106 1.7929 22 6 7.9415 -1.8012 1.6581 23 6 6.9840 -0.8280 1.8659 24 1 -0.5400 -0.9354 -0.0004 25 1 -0.5401 0.9352 0.0004 26 1 1.8500 -0.9352 -0.0004 27 1 1.3585 2.1316 0.0896 28 1 2.6212 1.4028 -0.9314 29 1 4.2558 2.8910 0.3309 30 1 2.9504 3.4756 1.3904 31 1 4.4009 2.7248 2.0973 32 1 4.7832 0.6072 0.3724 33 1 5.0788 0.7369 2.7813 34 1 3.8265 -0.5201 2.9223 35 1 4.2664 -2.7977 2.2220 36 1 5.9630 -4.5394 1.8422 37 1 12.6474 -4.8463 0.3052 38 1 8.9729 -1.5205 1.5036 39 1 7.2670 0.2142 1.8734 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000162636878.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:38 Heat of formation + Delta-G solvation = -9.255381 kcal Electronic energy + Delta-G solvation = -18604.539077 eV Core-core repulsion = 15705.201584 eV Total energy + Delta-G solvation = -2899.337493 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.90464 -39.11039 -37.95240 -35.02412 -34.42061 -32.49813 -31.79310 -29.83641 -27.53059 -27.31926 -25.17435 -23.66219 -21.92783 -21.83211 -20.47764 -19.80145 -19.10267 -17.01080 -16.63699 -16.44148 -16.03523 -15.74288 -15.56717 -15.41692 -15.13938 -14.49422 -14.38971 -14.23724 -14.07220 -13.94626 -13.52510 -13.16222 -12.99047 -12.85201 -12.51868 -12.44141 -12.26851 -11.98232 -11.93185 -11.73485 -11.60242 -11.26755 -10.90144 -10.10806 -9.78963 -9.24870 -8.94575 -8.50402 -6.22963 0.58655 0.63955 1.31138 1.35331 1.51814 1.55685 2.27958 2.74044 3.02221 3.16253 3.50546 3.95373 4.04032 4.08366 4.18635 4.25630 4.31108 4.47357 4.54883 4.58856 4.62012 4.75602 4.79218 4.82174 4.96684 5.00933 5.08241 5.17680 5.23915 5.28059 5.34684 5.38210 5.59183 5.77282 5.82600 5.91645 5.93702 6.00454 6.21295 6.29495 6.53879 6.84184 7.59218 8.61343 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.032879 B = 0.003621 C = 0.003425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 851.398710 B = 7730.982077 C = 8172.309335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.141 4.141 3 C -0.080 4.080 4 C 0.089 3.911 5 H 0.078 0.922 6 C -0.180 4.180 7 N -0.685 5.685 8 C 0.121 3.879 9 C -0.147 4.147 10 C -0.050 4.050 11 C -0.194 4.194 12 C 0.119 3.881 13 O -0.247 6.247 14 C -0.399 4.399 15 H 0.081 0.919 16 C 0.010 3.990 17 N -0.924 5.924 18 Si 0.971 3.029 19 H -0.266 1.266 20 H -0.267 1.267 21 H -0.263 1.263 22 C -0.238 4.238 23 C -0.067 4.067 24 H 0.095 0.905 25 H 0.102 0.898 26 H 0.101 0.899 27 H 0.079 0.921 28 H 0.068 0.932 29 H 0.057 0.943 30 H 0.071 0.929 31 H 0.052 0.948 32 H 0.341 0.659 33 H 0.042 0.958 34 H 0.084 0.916 35 H 0.148 0.852 36 H 0.126 0.874 37 H 0.285 0.715 38 H 0.106 0.894 39 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.672 11.071 1.792 23.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C -0.160 4.160 3 C -0.117 4.117 4 C -0.021 4.021 5 H 0.096 0.904 6 C -0.239 4.239 7 N -0.316 5.316 8 C -0.007 4.007 9 C -0.148 4.148 10 C -0.068 4.068 11 C -0.213 4.213 12 C 0.070 3.930 13 O -0.154 6.154 14 C -0.476 4.476 15 H 0.098 0.902 16 C -0.189 4.189 17 N -0.565 5.565 18 Si 0.793 3.207 19 H -0.191 1.191 20 H -0.192 1.192 21 H -0.187 1.187 22 C -0.257 4.257 23 C -0.085 4.085 24 H 0.114 0.886 25 H 0.120 0.880 26 H 0.119 0.881 27 H 0.098 0.902 28 H 0.087 0.913 29 H 0.076 0.924 30 H 0.090 0.910 31 H 0.071 0.929 32 H 0.159 0.841 33 H 0.060 0.940 34 H 0.102 0.898 35 H 0.166 0.834 36 H 0.144 0.856 37 H 0.094 0.906 38 H 0.124 0.876 39 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -20.945 10.276 1.732 23.394 hybrid contribution 1.421 0.103 0.001 1.425 sum -19.524 10.379 1.733 22.179 Atomic orbital electron populations 1.23932 0.95889 1.02080 1.02941 1.22963 0.95704 0.99107 0.98188 1.20767 0.97406 0.95255 0.98286 1.21549 0.92680 0.89145 0.98687 0.90390 1.22475 1.01426 0.98014 1.01953 1.60628 1.17253 1.41487 1.12244 1.20645 0.94526 0.94289 0.91240 1.19690 0.93645 0.94786 1.06721 1.20899 0.98673 0.91469 0.95774 1.20532 0.89620 1.00994 1.10162 1.19682 0.89717 0.88531 0.95038 1.83520 1.18412 1.33349 1.80141 1.20710 0.83743 0.95406 1.47697 0.90195 1.25279 0.93801 1.04539 0.95234 1.69726 1.02764 1.37411 1.46634 0.85216 0.78324 0.77614 0.79551 1.19074 1.19152 1.18739 1.21248 1.00549 0.93071 1.10811 1.20919 0.92380 0.98477 0.96746 0.88631 0.87957 0.88126 0.90218 0.91339 0.92377 0.90954 0.92875 0.84108 0.94018 0.89771 0.83390 0.85591 0.90570 0.87581 0.84979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -3.30 14.32 67.78 0.97 -2.33 16 2 C -0.14 -2.51 9.25 25.65 0.24 -2.27 16 3 C -0.08 -1.20 5.34 29.85 0.16 -1.05 16 4 C 0.09 1.39 2.58 44.92 0.12 1.50 16 5 H 0.08 1.22 7.80 -2.39 -0.02 1.20 16 6 C -0.18 -2.40 9.16 71.98 0.66 -1.74 16 7 N -0.69 -13.59 5.93 -495.57 -2.94 -16.53 16 8 C 0.12 2.59 5.61 85.56 0.48 3.07 16 9 C -0.15 -4.31 5.40 -19.83 -0.11 -4.41 16 10 C -0.05 -1.54 9.69 22.25 0.22 -1.33 16 11 C -0.19 -7.52 9.99 22.39 0.22 -7.29 16 12 C 0.12 5.65 6.65 22.58 0.15 5.80 16 13 O -0.25 -13.61 8.59 -22.86 -0.20 -13.81 16 14 C -0.40 -23.85 9.95 67.92 0.68 -23.17 16 15 H 0.08 5.00 5.44 -2.91 -0.02 4.98 16 16 C 0.01 0.57 5.49 84.83 0.47 1.03 16 17 N -0.92 -55.77 13.96 21.61 0.30 -55.47 16 18 Si 0.97 45.96 28.62 68.60 1.96 47.92 16 19 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 20 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 21 H -0.26 -12.44 7.11 99.48 0.71 -11.74 16 22 C -0.24 -10.48 9.17 22.39 0.21 -10.28 16 23 C -0.07 -2.26 9.69 22.25 0.22 -2.05 16 24 H 0.10 1.41 8.06 -2.91 -0.02 1.39 16 25 H 0.10 1.32 7.84 -2.91 -0.02 1.30 16 26 H 0.10 2.12 8.03 -2.91 -0.02 2.09 16 27 H 0.08 0.98 7.79 -2.39 -0.02 0.96 16 28 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 29 H 0.06 0.79 8.13 -2.39 -0.02 0.77 16 30 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.05 0.75 7.45 -2.39 -0.02 0.74 16 32 H 0.34 7.09 8.46 -89.70 -0.76 6.33 16 33 H 0.04 0.82 7.38 -2.39 -0.02 0.80 16 34 H 0.08 1.64 8.00 -2.38 -0.02 1.62 16 35 H 0.15 3.61 8.06 -2.91 -0.02 3.59 16 36 H 0.13 4.55 8.06 -2.91 -0.02 4.53 16 37 H 0.28 15.73 8.31 -92.71 -0.77 14.96 16 38 H 0.11 5.17 5.64 -2.91 -0.02 5.15 16 39 H 0.13 3.73 8.06 -2.91 -0.02 3.71 16 Total: -1.00 -64.69 329.49 4.06 -60.62 By element: Atomic # 1 Polarization: 21.51 SS G_CDS: 0.27 Total: 21.78 kcal Atomic # 6 Polarization: -49.19 SS G_CDS: 4.67 Total: -44.52 kcal Atomic # 7 Polarization: -69.36 SS G_CDS: -2.64 Total: -72.00 kcal Atomic # 8 Polarization: -13.61 SS G_CDS: -0.20 Total: -13.81 kcal Atomic # 14 Polarization: 45.96 SS G_CDS: 1.96 Total: 47.92 kcal Total: -64.69 4.06 -60.62 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000162636878.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.369 kcal (2) G-P(sol) polarization free energy of solvation -64.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.625 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds