Wall clock time and date at job start Mon Mar 30 2020 06:20:38
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.30998 * 1
3 3 C 1.50706 * 119.99480 * 2 1
4 4 C 1.53006 * 109.46920 * 125.00450 * 3 2 1
5 5 H 1.09000 * 109.46671 * 304.99901 * 4 3 2
6 6 C 1.52998 * 109.47007 * 185.00002 * 4 3 2
7 7 N 1.46898 * 109.47095 * 64.99862 * 4 3 2
8 8 C 1.46902 * 111.00020 * 204.99984 * 7 4 3
9 9 C 1.50697 * 109.47272 * 179.97438 * 8 7 4
10 10 C 1.38305 * 119.93136 * 269.72837 * 9 8 7
11 11 C 1.38105 * 120.06682 * 179.71991 * 10 9 8
12 12 C 1.38884 * 119.92766 * 0.57662 * 11 10 9
13 13 O 1.35752 * 120.06094 * 179.67805 * 12 11 10
14 14 C 1.34839 * 116.99404 * 174.48300 * 13 12 11
15 15 H 1.08006 * 119.99939 * 5.06066 * 14 13 12
16 16 C 1.38646 * 120.00079 * 185.05644 * 14 13 12
17 17 N 1.31559 * 120.00577 * 180.02562 * 16 14 13
18 18 Si 1.86806 * 119.99989 * 0.02562 * 16 14 13
19 19 H 1.48498 * 109.47181 * 89.99863 * 18 16 14
20 20 H 1.48497 * 109.47110 * 210.00265 * 18 16 14
21 21 H 1.48504 * 109.46974 * 330.00103 * 18 16 14
22 22 C 1.38873 * 119.86313 * 359.69672 * 12 11 10
23 23 C 1.38092 * 119.93314 * 0.02562 * 22 12 11
24 24 H 1.08006 * 119.99744 * 179.97438 * 1 2 3
25 25 H 1.07995 * 120.00486 * 359.97438 * 1 2 3
26 26 H 1.07995 * 120.00486 * 180.02562 * 2 1 3
27 27 H 1.08992 * 109.47290 * 5.00295 * 3 2 1
28 28 H 1.08999 * 109.47248 * 245.00053 * 3 2 1
29 29 H 1.09000 * 109.47323 * 299.99500 * 6 4 3
30 30 H 1.08996 * 109.47438 * 59.99968 * 6 4 3
31 31 H 1.09002 * 109.46662 * 179.97438 * 6 4 3
32 32 H 1.00897 * 110.99904 * 81.04556 * 7 4 3
33 33 H 1.08999 * 109.47302 * 300.00224 * 8 7 4
34 34 H 1.09004 * 109.46876 * 59.99934 * 8 7 4
35 35 H 1.07994 * 119.96661 * 359.97438 * 10 9 8
36 36 H 1.07996 * 120.03339 * 180.26834 * 11 10 9
37 37 H 0.96995 * 120.00562 * 179.97438 * 17 16 14
38 38 H 1.08002 * 120.03512 * 179.97438 * 22 12 11
39 39 H 1.08001 * 119.96812 * 179.97438 * 23 22 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.3100 0.0000 0.0000
3 6 2.0634 1.3052 0.0000
4 6 3.0350 1.3332 1.1816
5 1 2.4883 1.1469 2.1060
6 6 3.7090 2.7047 1.2553
7 7 4.0574 0.2942 0.9995
8 6 4.6208 -0.1220 2.2908
9 6 5.6631 -1.1866 2.0644
10 6 5.2977 -2.5205 2.0616
11 6 6.2497 -3.4982 1.8486
12 6 7.5769 -3.1412 1.6491
13 8 8.5159 -4.1004 1.4460
14 6 9.7623 -3.6828 1.1456
15 1 9.9958 -2.6283 1.1563
16 6 10.7442 -4.6070 0.8231
17 7 11.9604 -4.1997 0.5305
18 14 10.3402 -6.4307 0.8040
19 1 9.8769 -6.8210 -0.5518
20 1 11.5540 -7.2104 1.1559
21 1 9.2682 -6.7106 1.7929
22 6 7.9415 -1.8012 1.6581
23 6 6.9840 -0.8280 1.8659
24 1 -0.5400 -0.9354 -0.0004
25 1 -0.5401 0.9352 0.0004
26 1 1.8500 -0.9352 -0.0004
27 1 1.3585 2.1316 0.0896
28 1 2.6212 1.4028 -0.9314
29 1 4.2558 2.8910 0.3309
30 1 2.9504 3.4756 1.3904
31 1 4.4009 2.7248 2.0973
32 1 4.7832 0.6072 0.3724
33 1 5.0788 0.7369 2.7813
34 1 3.8265 -0.5201 2.9223
35 1 4.2664 -2.7977 2.2220
36 1 5.9630 -4.5394 1.8422
37 1 12.6474 -4.8463 0.3052
38 1 8.9729 -1.5205 1.5036
39 1 7.2670 0.2142 1.8734
RHF calculation, no. of doubly occupied orbitals= 49
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000162636878.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 06:20:38
Heat of formation + Delta-G solvation = -9.255381 kcal
Electronic energy + Delta-G solvation = -18604.539077 eV
Core-core repulsion = 15705.201584 eV
Total energy + Delta-G solvation = -2899.337493 eV
No. of doubly occupied orbitals = 49
Molecular weight
(most abundant/longest-lived isotopes) = 261.147 amu
Computer time = 0.44 seconds
Orbital eigenvalues (eV)
-40.90464 -39.11039 -37.95240 -35.02412 -34.42061 -32.49813 -31.79310 -29.83641
-27.53059 -27.31926 -25.17435 -23.66219 -21.92783 -21.83211 -20.47764 -19.80145
-19.10267 -17.01080 -16.63699 -16.44148 -16.03523 -15.74288 -15.56717 -15.41692
-15.13938 -14.49422 -14.38971 -14.23724 -14.07220 -13.94626 -13.52510 -13.16222
-12.99047 -12.85201 -12.51868 -12.44141 -12.26851 -11.98232 -11.93185 -11.73485
-11.60242 -11.26755 -10.90144 -10.10806 -9.78963 -9.24870 -8.94575 -8.50402
-6.22963 0.58655 0.63955 1.31138 1.35331 1.51814 1.55685 2.27958
2.74044 3.02221 3.16253 3.50546 3.95373 4.04032 4.08366 4.18635
4.25630 4.31108 4.47357 4.54883 4.58856 4.62012 4.75602 4.79218
4.82174 4.96684 5.00933 5.08241 5.17680 5.23915 5.28059 5.34684
5.38210 5.59183 5.77282 5.82600 5.91645 5.93702 6.00454 6.21295
6.29495 6.53879 6.84184 7.59218 8.61343
Molecular weight = 261.15amu
Principal moments of inertia in cm(-1)
A = 0.032879 B = 0.003621 C = 0.003425
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 851.398710 B = 7730.982077 C = 8172.309335
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.212 4.212
2 C -0.141 4.141
3 C -0.080 4.080
4 C 0.089 3.911
5 H 0.078 0.922
6 C -0.180 4.180
7 N -0.685 5.685
8 C 0.121 3.879
9 C -0.147 4.147
10 C -0.050 4.050
11 C -0.194 4.194
12 C 0.119 3.881
13 O -0.247 6.247
14 C -0.399 4.399
15 H 0.081 0.919
16 C 0.010 3.990
17 N -0.924 5.924
18 Si 0.971 3.029
19 H -0.266 1.266
20 H -0.267 1.267
21 H -0.263 1.263
22 C -0.238 4.238
23 C -0.067 4.067
24 H 0.095 0.905
25 H 0.102 0.898
26 H 0.101 0.899
27 H 0.079 0.921
28 H 0.068 0.932
29 H 0.057 0.943
30 H 0.071 0.929
31 H 0.052 0.948
32 H 0.341 0.659
33 H 0.042 0.958
34 H 0.084 0.916
35 H 0.148 0.852
36 H 0.126 0.874
37 H 0.285 0.715
38 H 0.106 0.894
39 H 0.132 0.868
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -20.672 11.071 1.792 23.518
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.248 4.248
2 C -0.160 4.160
3 C -0.117 4.117
4 C -0.021 4.021
5 H 0.096 0.904
6 C -0.239 4.239
7 N -0.316 5.316
8 C -0.007 4.007
9 C -0.148 4.148
10 C -0.068 4.068
11 C -0.213 4.213
12 C 0.070 3.930
13 O -0.154 6.154
14 C -0.476 4.476
15 H 0.098 0.902
16 C -0.189 4.189
17 N -0.565 5.565
18 Si 0.793 3.207
19 H -0.191 1.191
20 H -0.192 1.192
21 H -0.187 1.187
22 C -0.257 4.257
23 C -0.085 4.085
24 H 0.114 0.886
25 H 0.120 0.880
26 H 0.119 0.881
27 H 0.098 0.902
28 H 0.087 0.913
29 H 0.076 0.924
30 H 0.090 0.910
31 H 0.071 0.929
32 H 0.159 0.841
33 H 0.060 0.940
34 H 0.102 0.898
35 H 0.166 0.834
36 H 0.144 0.856
37 H 0.094 0.906
38 H 0.124 0.876
39 H 0.150 0.850
Dipole moment (debyes) X Y Z Total
from point charges -20.945 10.276 1.732 23.394
hybrid contribution 1.421 0.103 0.001 1.425
sum -19.524 10.379 1.733 22.179
Atomic orbital electron populations
1.23932 0.95889 1.02080 1.02941 1.22963 0.95704 0.99107 0.98188
1.20767 0.97406 0.95255 0.98286 1.21549 0.92680 0.89145 0.98687
0.90390 1.22475 1.01426 0.98014 1.01953 1.60628 1.17253 1.41487
1.12244 1.20645 0.94526 0.94289 0.91240 1.19690 0.93645 0.94786
1.06721 1.20899 0.98673 0.91469 0.95774 1.20532 0.89620 1.00994
1.10162 1.19682 0.89717 0.88531 0.95038 1.83520 1.18412 1.33349
1.80141 1.20710 0.83743 0.95406 1.47697 0.90195 1.25279 0.93801
1.04539 0.95234 1.69726 1.02764 1.37411 1.46634 0.85216 0.78324
0.77614 0.79551 1.19074 1.19152 1.18739 1.21248 1.00549 0.93071
1.10811 1.20919 0.92380 0.98477 0.96746 0.88631 0.87957 0.88126
0.90218 0.91339 0.92377 0.90954 0.92875 0.84108 0.94018 0.89771
0.83390 0.85591 0.90570 0.87581 0.84979
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.21 -3.30 14.32 67.78 0.97 -2.33 16
2 C -0.14 -2.51 9.25 25.65 0.24 -2.27 16
3 C -0.08 -1.20 5.34 29.85 0.16 -1.05 16
4 C 0.09 1.39 2.58 44.92 0.12 1.50 16
5 H 0.08 1.22 7.80 -2.39 -0.02 1.20 16
6 C -0.18 -2.40 9.16 71.98 0.66 -1.74 16
7 N -0.69 -13.59 5.93 -495.57 -2.94 -16.53 16
8 C 0.12 2.59 5.61 85.56 0.48 3.07 16
9 C -0.15 -4.31 5.40 -19.83 -0.11 -4.41 16
10 C -0.05 -1.54 9.69 22.25 0.22 -1.33 16
11 C -0.19 -7.52 9.99 22.39 0.22 -7.29 16
12 C 0.12 5.65 6.65 22.58 0.15 5.80 16
13 O -0.25 -13.61 8.59 -22.86 -0.20 -13.81 16
14 C -0.40 -23.85 9.95 67.92 0.68 -23.17 16
15 H 0.08 5.00 5.44 -2.91 -0.02 4.98 16
16 C 0.01 0.57 5.49 84.83 0.47 1.03 16
17 N -0.92 -55.77 13.96 21.61 0.30 -55.47 16
18 Si 0.97 45.96 28.62 68.60 1.96 47.92 16
19 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16
20 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16
21 H -0.26 -12.44 7.11 99.48 0.71 -11.74 16
22 C -0.24 -10.48 9.17 22.39 0.21 -10.28 16
23 C -0.07 -2.26 9.69 22.25 0.22 -2.05 16
24 H 0.10 1.41 8.06 -2.91 -0.02 1.39 16
25 H 0.10 1.32 7.84 -2.91 -0.02 1.30 16
26 H 0.10 2.12 8.03 -2.91 -0.02 2.09 16
27 H 0.08 0.98 7.79 -2.39 -0.02 0.96 16
28 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16
29 H 0.06 0.79 8.13 -2.39 -0.02 0.77 16
30 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16
31 H 0.05 0.75 7.45 -2.39 -0.02 0.74 16
32 H 0.34 7.09 8.46 -89.70 -0.76 6.33 16
33 H 0.04 0.82 7.38 -2.39 -0.02 0.80 16
34 H 0.08 1.64 8.00 -2.38 -0.02 1.62 16
35 H 0.15 3.61 8.06 -2.91 -0.02 3.59 16
36 H 0.13 4.55 8.06 -2.91 -0.02 4.53 16
37 H 0.28 15.73 8.31 -92.71 -0.77 14.96 16
38 H 0.11 5.17 5.64 -2.91 -0.02 5.15 16
39 H 0.13 3.73 8.06 -2.91 -0.02 3.71 16
Total: -1.00 -64.69 329.49 4.06 -60.62
By element:
Atomic # 1 Polarization: 21.51 SS G_CDS: 0.27 Total: 21.78 kcal
Atomic # 6 Polarization: -49.19 SS G_CDS: 4.67 Total: -44.52 kcal
Atomic # 7 Polarization: -69.36 SS G_CDS: -2.64 Total: -72.00 kcal
Atomic # 8 Polarization: -13.61 SS G_CDS: -0.20 Total: -13.81 kcal
Atomic # 14 Polarization: 45.96 SS G_CDS: 1.96 Total: 47.92 kcal
Total: -64.69 4.06 -60.62 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000162636878.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 51.369 kcal
(2) G-P(sol) polarization free energy of solvation -64.689 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.319 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.064 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.625 kcal
(6) G-S(sol) free energy of system = (1) + (5) -9.255 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.45 seconds