Wall clock time and date at job start Mon Mar 30 2020 06:20:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50698 * 120.00029 * 2 1 4 4 C 1.53001 * 109.46807 * 124.99993 * 3 2 1 5 5 H 1.09000 * 109.47207 * 54.99812 * 4 3 2 6 6 C 1.53005 * 109.46982 * 174.99986 * 4 3 2 7 7 N 1.46896 * 109.47308 * 294.99638 * 4 3 2 8 8 C 1.46897 * 111.00241 * 154.99846 * 7 4 3 9 9 C 1.50699 * 109.47454 * 180.02562 * 8 7 4 10 10 C 1.38307 * 119.92800 * 269.72998 * 9 8 7 11 11 C 1.38098 * 120.06479 * 179.72291 * 10 9 8 12 12 C 1.38880 * 119.93297 * 0.57269 * 11 10 9 13 13 O 1.35746 * 120.06858 * 179.68420 * 12 11 10 14 14 C 1.34837 * 117.00040 * 174.48442 * 13 12 11 15 15 H 1.08006 * 119.99808 * 5.05299 * 14 13 12 16 16 C 1.38651 * 120.00163 * 185.05219 * 14 13 12 17 17 N 1.31553 * 120.00232 * 0.02562 * 16 14 13 18 18 Si 1.86801 * 119.99718 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.47325 * 90.00664 * 18 16 14 20 20 H 1.48504 * 109.46936 * 210.00183 * 18 16 14 21 21 H 1.48497 * 109.47571 * 330.00077 * 18 16 14 22 22 C 1.38875 * 119.86096 * 359.70174 * 12 11 10 23 23 C 1.38102 * 119.93039 * 0.02562 * 22 12 11 24 24 H 1.07996 * 119.99702 * 0.02562 * 1 2 3 25 25 H 1.08004 * 119.99921 * 179.72357 * 1 2 3 26 26 H 1.07996 * 119.99702 * 179.97438 * 2 1 3 27 27 H 1.09002 * 109.47038 * 244.99815 * 3 2 1 28 28 H 1.08994 * 109.47409 * 4.99853 * 3 2 1 29 29 H 1.09001 * 109.47165 * 180.02562 * 6 4 3 30 30 H 1.08997 * 109.46815 * 299.99944 * 6 4 3 31 31 H 1.09000 * 109.47292 * 59.99877 * 6 4 3 32 32 H 1.00896 * 111.00778 * 278.95914 * 7 4 3 33 33 H 1.08999 * 109.47519 * 300.00557 * 8 7 4 34 34 H 1.09000 * 109.46884 * 60.00495 * 8 7 4 35 35 H 1.08000 * 119.96827 * 359.97438 * 10 9 8 36 36 H 1.08006 * 120.03513 * 180.27401 * 11 10 9 37 37 H 0.96998 * 120.00453 * 180.02562 * 17 16 14 38 38 H 1.08001 * 120.03709 * 179.97438 * 22 12 11 39 39 H 1.08001 * 119.96391 * 179.97438 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3330 1.1817 5 1 3.6826 0.4572 1.1404 6 6 3.8876 2.6015 1.1111 7 7 2.2765 1.3222 2.4396 8 6 3.0817 0.7662 3.5352 9 6 2.2721 0.7708 4.8062 10 6 2.3145 1.8678 5.6474 11 6 1.5692 1.8774 6.8100 12 6 0.7859 0.7791 7.1401 13 8 0.0573 0.7830 8.2854 14 6 -0.7682 -0.2635 8.4893 15 1 -0.7675 -1.0943 7.7991 16 6 -1.6179 -0.2731 9.5849 17 7 -1.6191 0.7391 10.4253 18 14 -2.7619 -1.7226 9.8669 19 1 -2.0756 -2.7395 10.7037 20 1 -3.9892 -1.2567 10.5613 21 1 -3.1307 -2.3238 8.5601 22 6 0.7499 -0.3232 6.2961 23 6 1.4931 -0.3244 5.1321 24 1 -0.5399 0.9353 -0.0004 25 1 -0.5400 -0.9353 -0.0045 26 1 1.8500 -0.9353 0.0004 27 1 2.6213 1.4025 -0.9314 28 1 1.3587 2.1316 0.0895 29 1 4.5800 2.6212 1.9526 30 1 4.4504 2.6095 0.1777 31 1 3.2400 3.4773 1.1524 32 1 1.9432 2.2465 2.6689 33 1 3.3695 -0.2566 3.2918 34 1 3.9770 1.3727 3.6721 35 1 2.9279 2.7195 5.3928 36 1 1.5993 2.7362 7.4643 37 1 -2.2132 0.7322 11.1920 38 1 0.1420 -1.1790 6.5502 39 1 1.4658 -1.1816 4.4756 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000162636997.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:41 Heat of formation + Delta-G solvation = 6.253811 kcal Electronic energy + Delta-G solvation = -18675.408725 eV Core-core repulsion = 15776.743761 eV Total energy + Delta-G solvation = -2898.664964 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.08500 -37.85694 -36.41928 -33.96135 -32.32541 -31.24143 -30.12512 -28.40379 -26.68750 -25.51495 -23.89977 -21.93953 -20.97085 -20.43784 -19.74466 -17.94913 -16.92583 -15.80264 -15.61677 -14.78081 -14.60068 -14.40385 -14.13387 -13.70186 -13.63709 -13.52768 -13.12798 -12.68738 -12.67343 -12.55095 -12.29627 -11.75492 -11.73238 -11.49395 -11.22080 -10.96276 -10.84727 -10.75042 -10.64949 -10.47315 -10.41153 -9.29940 -9.19251 -8.81237 -8.24882 -8.12607 -7.14750 -6.42932 -4.01677 2.25620 2.33260 2.44505 3.14213 3.15503 3.20328 3.98786 4.25605 4.67325 4.71613 4.96266 5.12025 5.16372 5.20512 5.29163 5.33966 5.41540 5.47384 5.52762 5.67908 5.70054 5.78480 5.85917 5.92696 5.95779 5.96647 6.09892 6.24693 6.46919 6.71976 6.73815 6.89523 6.94808 7.06971 7.20014 7.25774 7.44535 7.47358 7.56365 7.86730 8.02492 9.02956 9.73406 10.75234 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.026692 B = 0.003894 C = 0.003531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1048.757092 B = 7189.649001 C = 7927.118100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.134 4.134 3 C -0.082 4.082 4 C 0.085 3.915 5 H 0.075 0.925 6 C -0.183 4.183 7 N -0.675 5.675 8 C 0.119 3.881 9 C -0.183 4.183 10 C -0.069 4.069 11 C -0.194 4.194 12 C 0.155 3.845 13 O -0.179 6.179 14 C -0.391 4.391 15 H 0.092 0.908 16 C 0.039 3.961 17 N -0.864 5.864 18 Si 0.940 3.060 19 H -0.273 1.273 20 H -0.277 1.277 21 H -0.267 1.267 22 C -0.235 4.235 23 C -0.048 4.048 24 H 0.092 0.908 25 H 0.091 0.909 26 H 0.100 0.900 27 H 0.068 0.932 28 H 0.066 0.934 29 H 0.055 0.945 30 H 0.058 0.942 31 H 0.057 0.943 32 H 0.341 0.659 33 H 0.067 0.933 34 H 0.026 0.974 35 H 0.106 0.894 36 H 0.115 0.885 37 H 0.270 0.730 38 H 0.126 0.874 39 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.891 0.387 -17.344 19.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.152 4.152 3 C -0.119 4.119 4 C -0.026 4.026 5 H 0.093 0.907 6 C -0.242 4.242 7 N -0.306 5.306 8 C -0.009 4.009 9 C -0.184 4.184 10 C -0.088 4.088 11 C -0.213 4.213 12 C 0.102 3.898 13 O -0.082 6.082 14 C -0.468 4.468 15 H 0.109 0.891 16 C -0.165 4.165 17 N -0.499 5.499 18 Si 0.765 3.235 19 H -0.199 1.199 20 H -0.203 1.203 21 H -0.192 1.192 22 C -0.254 4.254 23 C -0.067 4.067 24 H 0.110 0.890 25 H 0.109 0.891 26 H 0.119 0.881 27 H 0.087 0.913 28 H 0.084 0.916 29 H 0.074 0.926 30 H 0.077 0.923 31 H 0.076 0.924 32 H 0.159 0.841 33 H 0.086 0.914 34 H 0.044 0.956 35 H 0.124 0.876 36 H 0.133 0.867 37 H 0.079 0.921 38 H 0.143 0.857 39 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 7.434 0.012 -17.069 18.617 hybrid contribution -0.002 -0.042 0.395 0.398 sum 7.431 -0.031 -16.673 18.255 Atomic orbital electron populations 1.23686 0.95983 1.01332 1.01970 1.22637 0.95844 0.97706 0.98981 1.20765 0.98125 0.96124 0.96925 1.21543 0.93362 0.97097 0.90570 0.90654 1.22531 1.00652 0.99037 1.02026 1.60651 1.38885 1.29249 1.01848 1.20626 0.92805 0.99070 0.88395 1.19126 1.05379 0.96561 0.97375 1.20471 0.97828 0.96745 0.93770 1.20163 1.03196 0.98393 0.99581 1.19392 0.91053 0.92957 0.86445 1.83975 1.48420 1.44169 1.31685 1.21336 1.16887 0.97316 1.11222 0.89065 1.25281 0.97453 0.98559 0.95212 1.70036 1.37006 1.29789 1.13058 0.85721 0.79088 0.79713 0.78973 1.19901 1.20257 1.19163 1.21167 1.06389 1.00388 0.97503 1.20563 0.94314 0.96819 0.95018 0.88986 0.89084 0.88148 0.91327 0.91555 0.92611 0.92311 0.92413 0.84069 0.91411 0.95580 0.87577 0.86684 0.92055 0.85654 0.87573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.12 14.32 29.01 0.42 -1.70 16 2 C -0.13 -1.41 9.25 -36.03 -0.33 -1.75 16 3 C -0.08 -0.77 5.34 -27.88 -0.15 -0.91 16 4 C 0.08 0.83 2.58 -67.71 -0.17 0.66 16 5 H 0.08 0.75 7.80 -51.93 -0.40 0.34 16 6 C -0.18 -1.56 9.16 37.16 0.34 -1.22 16 7 N -0.68 -8.36 5.95 -107.99 -0.64 -9.00 16 8 C 0.12 1.61 5.61 -4.98 -0.03 1.58 16 9 C -0.18 -3.13 5.40 -104.58 -0.56 -3.70 16 10 C -0.07 -1.24 9.69 -39.61 -0.38 -1.62 16 11 C -0.19 -4.15 9.99 -39.40 -0.39 -4.54 16 12 C 0.16 3.81 6.65 -39.11 -0.26 3.55 16 13 O -0.18 -5.19 9.76 0.04 0.00 -5.19 16 14 C -0.39 -11.09 9.49 30.89 0.29 -10.79 16 15 H 0.09 2.40 5.20 -52.48 -0.27 2.13 16 16 C 0.04 1.08 5.49 -17.52 -0.10 0.99 16 17 N -0.86 -25.57 13.67 55.48 0.76 -24.81 16 18 Si 0.94 20.74 29.55 -169.99 -5.02 15.71 16 19 H -0.27 -5.87 7.11 56.52 0.40 -5.46 16 20 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 21 H -0.27 -5.68 7.11 56.52 0.40 -5.27 16 22 C -0.24 -5.22 9.17 -39.40 -0.36 -5.58 16 23 C -0.05 -0.91 9.69 -39.61 -0.38 -1.30 16 24 H 0.09 0.99 7.84 -52.49 -0.41 0.58 16 25 H 0.09 0.95 8.06 -52.48 -0.42 0.52 16 26 H 0.10 1.02 8.06 -52.49 -0.42 0.59 16 27 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.07 0.65 7.79 -51.93 -0.40 0.24 16 29 H 0.05 0.50 7.45 -51.93 -0.39 0.11 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.06 0.49 8.13 -51.93 -0.42 0.06 16 32 H 0.34 4.28 8.46 -39.29 -0.33 3.95 16 33 H 0.07 0.89 8.00 -51.93 -0.42 0.48 16 34 H 0.03 0.33 7.38 -51.93 -0.38 -0.06 16 35 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 36 H 0.12 2.38 8.06 -52.48 -0.42 1.96 16 37 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 38 H 0.13 2.80 5.64 -52.49 -0.30 2.50 16 39 H 0.11 1.79 8.06 -52.49 -0.42 1.36 16 LS Contribution 330.65 15.07 4.98 4.98 Total: -1.00 -30.10 330.65 -7.83 -37.93 By element: Atomic # 1 Polarization: 12.53 SS G_CDS: -5.83 Total: 6.71 kcal Atomic # 6 Polarization: -24.25 SS G_CDS: -2.08 Total: -26.33 kcal Atomic # 7 Polarization: -33.93 SS G_CDS: 0.12 Total: -33.81 kcal Atomic # 8 Polarization: -5.19 SS G_CDS: 0.00 Total: -5.19 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.71 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -30.10 -7.83 -37.93 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000162636997.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.179 kcal (2) G-P(sol) polarization free energy of solvation -30.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.926 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds