Wall clock time and date at job start Mon Mar 30 2020 06:20:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50698 * 120.00029 * 2 1 4 4 C 1.53001 * 109.46807 * 124.99993 * 3 2 1 5 5 H 1.09000 * 109.47207 * 54.99812 * 4 3 2 6 6 C 1.53005 * 109.46982 * 174.99986 * 4 3 2 7 7 N 1.46896 * 109.47308 * 294.99638 * 4 3 2 8 8 C 1.46897 * 111.00241 * 154.99846 * 7 4 3 9 9 C 1.50699 * 109.47454 * 180.02562 * 8 7 4 10 10 C 1.38307 * 119.92800 * 269.72998 * 9 8 7 11 11 C 1.38098 * 120.06479 * 179.72291 * 10 9 8 12 12 C 1.38880 * 119.93297 * 0.57269 * 11 10 9 13 13 O 1.35746 * 120.06858 * 179.68420 * 12 11 10 14 14 C 1.34837 * 117.00040 * 174.48442 * 13 12 11 15 15 H 1.08006 * 119.99808 * 5.05299 * 14 13 12 16 16 C 1.38651 * 120.00163 * 185.05219 * 14 13 12 17 17 N 1.31553 * 120.00232 * 0.02562 * 16 14 13 18 18 Si 1.86801 * 119.99718 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.47325 * 90.00664 * 18 16 14 20 20 H 1.48504 * 109.46936 * 210.00183 * 18 16 14 21 21 H 1.48497 * 109.47571 * 330.00077 * 18 16 14 22 22 C 1.38875 * 119.86096 * 359.70174 * 12 11 10 23 23 C 1.38102 * 119.93039 * 0.02562 * 22 12 11 24 24 H 1.07996 * 119.99702 * 0.02562 * 1 2 3 25 25 H 1.08004 * 119.99921 * 179.72357 * 1 2 3 26 26 H 1.07996 * 119.99702 * 179.97438 * 2 1 3 27 27 H 1.09002 * 109.47038 * 244.99815 * 3 2 1 28 28 H 1.08994 * 109.47409 * 4.99853 * 3 2 1 29 29 H 1.09001 * 109.47165 * 180.02562 * 6 4 3 30 30 H 1.08997 * 109.46815 * 299.99944 * 6 4 3 31 31 H 1.09000 * 109.47292 * 59.99877 * 6 4 3 32 32 H 1.00896 * 111.00778 * 278.95914 * 7 4 3 33 33 H 1.08999 * 109.47519 * 300.00557 * 8 7 4 34 34 H 1.09000 * 109.46884 * 60.00495 * 8 7 4 35 35 H 1.08000 * 119.96827 * 359.97438 * 10 9 8 36 36 H 1.08006 * 120.03513 * 180.27401 * 11 10 9 37 37 H 0.96998 * 120.00453 * 180.02562 * 17 16 14 38 38 H 1.08001 * 120.03709 * 179.97438 * 22 12 11 39 39 H 1.08001 * 119.96391 * 179.97438 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3330 1.1817 5 1 3.6826 0.4572 1.1404 6 6 3.8876 2.6015 1.1111 7 7 2.2765 1.3222 2.4396 8 6 3.0817 0.7662 3.5352 9 6 2.2721 0.7708 4.8062 10 6 2.3145 1.8678 5.6474 11 6 1.5692 1.8774 6.8100 12 6 0.7859 0.7791 7.1401 13 8 0.0573 0.7830 8.2854 14 6 -0.7682 -0.2635 8.4893 15 1 -0.7675 -1.0943 7.7991 16 6 -1.6179 -0.2731 9.5849 17 7 -1.6191 0.7391 10.4253 18 14 -2.7619 -1.7226 9.8669 19 1 -2.0756 -2.7395 10.7037 20 1 -3.9892 -1.2567 10.5613 21 1 -3.1307 -2.3238 8.5601 22 6 0.7499 -0.3232 6.2961 23 6 1.4931 -0.3244 5.1321 24 1 -0.5399 0.9353 -0.0004 25 1 -0.5400 -0.9353 -0.0045 26 1 1.8500 -0.9353 0.0004 27 1 2.6213 1.4025 -0.9314 28 1 1.3587 2.1316 0.0895 29 1 4.5800 2.6212 1.9526 30 1 4.4504 2.6095 0.1777 31 1 3.2400 3.4773 1.1524 32 1 1.9432 2.2465 2.6689 33 1 3.3695 -0.2566 3.2918 34 1 3.9770 1.3727 3.6721 35 1 2.9279 2.7195 5.3928 36 1 1.5993 2.7362 7.4643 37 1 -2.2132 0.7322 11.1920 38 1 0.1420 -1.1790 6.5502 39 1 1.4658 -1.1816 4.4756 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000162636997.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:40 Heat of formation + Delta-G solvation = -11.958039 kcal Electronic energy + Delta-G solvation = -18676.198450 eV Core-core repulsion = 15776.743761 eV Total energy + Delta-G solvation = -2899.454689 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.78768 -39.02925 -37.88055 -34.97237 -34.24848 -32.40194 -31.76033 -29.71687 -27.47759 -27.38098 -25.25210 -23.60461 -22.01000 -21.74373 -20.58413 -19.82446 -18.81851 -16.88837 -16.53174 -16.43983 -16.17564 -15.72942 -15.50689 -15.27770 -14.91528 -14.63330 -14.43042 -14.25092 -13.93303 -13.61235 -13.46505 -13.16945 -12.89016 -12.74885 -12.48337 -12.36767 -12.27481 -12.13147 -11.93167 -11.66134 -11.60847 -11.16273 -10.79045 -10.01013 -9.75852 -9.20218 -8.86726 -8.47040 -6.15191 0.62029 0.70193 1.34769 1.44009 1.52424 1.62273 2.18044 2.80076 3.12423 3.53002 3.54504 3.92598 4.07528 4.10125 4.22037 4.26051 4.43716 4.46771 4.52975 4.60679 4.64275 4.74518 4.82218 4.85890 5.00922 5.02528 5.11262 5.15526 5.19335 5.22039 5.32665 5.37163 5.58588 5.73433 5.84950 5.91201 6.03636 6.07931 6.21057 6.31289 6.58463 6.97847 7.79013 8.76343 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.026692 B = 0.003894 C = 0.003531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1048.757092 B = 7189.649001 C = 7927.118100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.134 4.134 3 C -0.080 4.080 4 C 0.088 3.912 5 H 0.080 0.920 6 C -0.179 4.179 7 N -0.687 5.687 8 C 0.124 3.876 9 C -0.155 4.155 10 C -0.060 4.060 11 C -0.205 4.205 12 C 0.112 3.888 13 O -0.234 6.234 14 C -0.414 4.414 15 H 0.100 0.900 16 C -0.023 4.023 17 N -0.921 5.921 18 Si 1.018 2.982 19 H -0.262 1.262 20 H -0.270 1.270 21 H -0.254 1.254 22 C -0.245 4.245 23 C -0.051 4.051 24 H 0.089 0.911 25 H 0.091 0.909 26 H 0.106 0.894 27 H 0.088 0.912 28 H 0.061 0.939 29 H 0.054 0.946 30 H 0.072 0.928 31 H 0.056 0.944 32 H 0.340 0.660 33 H 0.078 0.922 34 H 0.046 0.954 35 H 0.146 0.854 36 H 0.112 0.888 37 H 0.273 0.727 38 H 0.115 0.885 39 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.472 -0.202 -20.203 22.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C -0.152 4.152 3 C -0.117 4.117 4 C -0.022 4.022 5 H 0.098 0.902 6 C -0.237 4.237 7 N -0.318 5.318 8 C -0.004 4.004 9 C -0.156 4.156 10 C -0.078 4.078 11 C -0.224 4.224 12 C 0.062 3.938 13 O -0.140 6.140 14 C -0.491 4.491 15 H 0.117 0.883 16 C -0.220 4.220 17 N -0.560 5.560 18 Si 0.837 3.163 19 H -0.187 1.187 20 H -0.195 1.195 21 H -0.178 1.178 22 C -0.264 4.264 23 C -0.069 4.069 24 H 0.108 0.892 25 H 0.110 0.890 26 H 0.124 0.876 27 H 0.106 0.894 28 H 0.079 0.921 29 H 0.073 0.927 30 H 0.091 0.909 31 H 0.076 0.924 32 H 0.159 0.841 33 H 0.096 0.904 34 H 0.065 0.935 35 H 0.164 0.836 36 H 0.130 0.870 37 H 0.082 0.918 38 H 0.133 0.867 39 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 9.057 -0.575 -19.989 21.953 hybrid contribution -0.249 0.226 0.965 1.022 sum 8.808 -0.349 -19.024 20.967 Atomic orbital electron populations 1.23771 0.96480 1.01355 1.03074 1.22843 0.95783 0.98586 0.98013 1.20781 0.98049 0.95199 0.97704 1.21565 0.93357 0.98097 0.89167 0.90176 1.22465 1.00406 0.98080 1.02783 1.60592 1.39458 1.29382 1.02347 1.20602 0.92673 1.00419 0.86700 1.19657 1.02961 0.94868 0.98147 1.20886 0.96767 0.98217 0.91953 1.20444 1.03388 0.97596 1.01001 1.19947 0.92171 0.95034 0.86625 1.83936 1.50543 1.45216 1.34355 1.21816 1.17479 0.97815 1.11940 0.88281 1.26577 0.98996 1.01863 0.94544 1.70179 1.38913 1.32619 1.14245 0.84599 0.76582 0.75698 0.79409 1.18702 1.19477 1.17787 1.21248 1.07110 0.99490 0.98539 1.20880 0.93616 0.98452 0.93963 0.89239 0.89044 0.87620 0.89361 0.92067 0.92733 0.90868 0.92446 0.84146 0.90390 0.93546 0.83583 0.86986 0.91830 0.86712 0.84990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -4.29 14.32 67.78 0.97 -3.32 16 2 C -0.13 -2.49 9.25 25.64 0.24 -2.25 16 3 C -0.08 -1.23 5.34 29.85 0.16 -1.07 16 4 C 0.09 1.37 2.58 44.92 0.12 1.49 16 5 H 0.08 1.22 7.80 -2.39 -0.02 1.20 16 6 C -0.18 -2.29 9.16 71.98 0.66 -1.63 16 7 N -0.69 -14.33 5.95 -495.59 -2.95 -17.28 16 8 C 0.12 2.78 5.61 85.56 0.48 3.26 16 9 C -0.16 -4.81 5.40 -19.83 -0.11 -4.92 16 10 C -0.06 -1.98 9.69 22.25 0.22 -1.76 16 11 C -0.21 -8.83 9.99 22.39 0.22 -8.60 16 12 C 0.11 5.74 6.65 22.58 0.15 5.89 16 13 O -0.23 -14.40 9.76 -22.77 -0.22 -14.62 16 14 C -0.41 -24.71 9.49 67.92 0.64 -24.06 16 15 H 0.10 5.46 5.20 -2.91 -0.02 5.44 16 16 C -0.02 -1.30 5.49 84.83 0.47 -0.83 16 17 N -0.92 -57.37 13.67 21.61 0.30 -57.07 16 18 Si 1.02 43.62 29.55 68.60 2.03 45.65 16 19 H -0.26 -10.63 7.11 99.48 0.71 -9.93 16 20 H -0.27 -11.09 7.11 99.48 0.71 -10.39 16 21 H -0.25 -10.18 7.11 99.48 0.71 -9.47 16 22 C -0.24 -11.01 9.17 22.39 0.21 -10.81 16 23 C -0.05 -1.81 9.69 22.25 0.22 -1.59 16 24 H 0.09 1.83 7.84 -2.91 -0.02 1.81 16 25 H 0.09 1.80 8.06 -2.91 -0.02 1.78 16 26 H 0.11 1.83 8.06 -2.91 -0.02 1.81 16 27 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 28 H 0.06 1.02 7.79 -2.39 -0.02 1.01 16 29 H 0.05 0.73 7.45 -2.39 -0.02 0.71 16 30 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.06 0.75 8.13 -2.39 -0.02 0.73 16 32 H 0.34 7.28 8.46 -89.70 -0.76 6.52 16 33 H 0.08 1.67 8.00 -2.39 -0.02 1.65 16 34 H 0.05 0.90 7.38 -2.39 -0.02 0.89 16 35 H 0.15 3.70 8.06 -2.91 -0.02 3.67 16 36 H 0.11 4.78 8.06 -2.91 -0.02 4.75 16 37 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 38 H 0.12 5.30 5.64 -2.91 -0.02 5.29 16 39 H 0.13 4.04 8.06 -2.91 -0.02 4.02 16 Total: -1.00 -69.59 330.65 4.06 -65.53 By element: Atomic # 1 Polarization: 27.73 SS G_CDS: 0.27 Total: 28.00 kcal Atomic # 6 Polarization: -54.84 SS G_CDS: 4.64 Total: -50.21 kcal Atomic # 7 Polarization: -71.70 SS G_CDS: -2.65 Total: -74.35 kcal Atomic # 8 Polarization: -14.40 SS G_CDS: -0.22 Total: -14.62 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 2.03 Total: 45.65 kcal Total: -69.59 4.06 -65.53 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000162636997.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.573 kcal (2) G-P(sol) polarization free energy of solvation -69.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds