Wall clock time and date at job start Mon Mar 30 2020 06:20:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50708 * 119.99346 * 2 1 4 4 C 1.53002 * 109.46958 * 125.00392 * 3 2 1 5 5 H 1.08995 * 109.47089 * 304.99862 * 4 3 2 6 6 C 1.52996 * 109.47019 * 184.99717 * 4 3 2 7 7 N 1.46904 * 109.47215 * 64.99284 * 4 3 2 8 8 C 1.46896 * 110.99978 * 204.99910 * 7 4 3 9 9 C 1.50700 * 109.47082 * 180.02562 * 8 7 4 10 10 C 1.38318 * 119.96924 * 269.72335 * 9 8 7 11 11 C 1.38277 * 120.13852 * 179.76314 * 10 9 8 12 12 C 1.38123 * 120.06962 * 0.51582 * 11 10 9 13 13 C 1.38851 * 119.93253 * 359.74106 * 12 11 10 14 14 O 1.35742 * 120.07214 * 179.97438 * 13 12 11 15 15 C 1.34828 * 116.99935 * 354.49043 * 14 13 12 16 16 H 1.07996 * 120.00312 * 5.05057 * 15 14 13 17 17 C 1.38661 * 120.00031 * 185.05555 * 15 14 13 18 18 N 1.31556 * 120.00067 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 120.00065 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.47186 * 359.97438 * 19 17 15 21 21 H 1.48501 * 109.47163 * 120.00031 * 19 17 15 22 22 H 1.48506 * 109.47294 * 240.00345 * 19 17 15 23 23 C 1.38084 * 119.96207 * 90.00149 * 9 8 7 24 24 H 1.08001 * 120.00451 * 359.97438 * 1 2 3 25 25 H 1.08006 * 119.99724 * 180.02562 * 1 2 3 26 26 H 1.07993 * 120.00188 * 180.02562 * 2 1 3 27 27 H 1.08994 * 109.47595 * 5.00160 * 3 2 1 28 28 H 1.08996 * 109.46370 * 244.99933 * 3 2 1 29 29 H 1.08994 * 109.47220 * 59.99992 * 6 4 3 30 30 H 1.09000 * 109.46984 * 179.97438 * 6 4 3 31 31 H 1.09004 * 109.47123 * 299.99455 * 6 4 3 32 32 H 1.00898 * 111.00176 * 328.95961 * 7 4 3 33 33 H 1.09004 * 109.47446 * 300.00177 * 8 7 4 34 34 H 1.09000 * 109.46785 * 60.00498 * 8 7 4 35 35 H 1.08005 * 119.93001 * 0.02562 * 10 9 8 36 36 H 1.08007 * 119.96371 * 180.25721 * 11 10 9 37 37 H 1.07999 * 120.03460 * 179.76420 * 12 11 10 38 38 H 0.96995 * 120.00082 * 180.02562 * 18 17 15 39 39 H 1.08003 * 120.03695 * 359.95436 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3053 0.0000 4 6 3.0350 1.3333 1.1816 5 1 2.4883 1.1470 2.1060 6 6 3.7090 2.7048 1.2552 7 7 4.0574 0.2942 0.9996 8 6 4.6207 -0.1219 2.2909 9 6 5.6639 -1.1857 2.0644 10 6 5.3004 -2.5203 2.0611 11 6 6.2538 -3.4990 1.8488 12 6 7.5746 -3.1470 1.6499 13 6 7.9436 -1.8084 1.6580 14 8 9.2409 -1.4594 1.4633 15 6 10.1389 -2.4618 1.3819 16 1 9.8042 -3.4885 1.3892 17 6 11.4922 -2.1744 1.2891 18 7 11.9000 -0.9236 1.2809 19 14 12.7364 -3.5631 1.1771 20 1 12.0267 -4.8672 1.2078 21 1 13.4987 -3.4436 -0.0917 22 1 13.6729 -3.4827 2.3268 23 6 6.9826 -0.8273 1.8662 24 1 -0.5401 0.9353 0.0004 25 1 -0.5400 -0.9354 0.0004 26 1 1.8500 -0.9352 -0.0004 27 1 1.3585 2.1317 0.0896 28 1 2.6211 1.4027 -0.9314 29 1 2.9504 3.4757 1.3902 30 1 4.4009 2.7249 2.0972 31 1 4.2558 2.8910 0.3308 32 1 3.6839 -0.4965 0.4963 33 1 5.0788 0.7371 2.7813 34 1 3.8265 -0.5200 2.9223 35 1 4.2690 -2.7982 2.2205 36 1 5.9662 -4.5400 1.8427 37 1 8.3194 -3.9121 1.4880 38 1 12.8466 -0.7226 1.2156 39 1 7.2665 0.2147 1.8726 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000162637144.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:43 Heat of formation + Delta-G solvation = 7.183052 kcal Electronic energy + Delta-G solvation = -18675.074093 eV Core-core repulsion = 15776.449424 eV Total energy + Delta-G solvation = -2898.624669 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.10361 -37.91584 -36.43542 -34.06509 -32.27795 -31.67160 -29.55168 -28.60769 -26.85039 -25.44286 -24.30204 -21.58978 -20.96426 -20.57725 -19.74367 -17.66942 -16.94884 -15.91950 -15.89424 -15.05694 -14.73442 -14.50404 -14.33367 -13.89621 -13.52731 -13.31202 -13.11462 -12.76089 -12.53739 -12.30579 -12.09799 -11.89622 -11.67296 -11.48254 -11.23077 -11.06738 -10.92250 -10.75035 -10.65888 -10.50679 -10.37585 -9.51462 -9.29591 -8.82058 -8.33254 -8.02804 -7.20116 -6.41513 -4.00491 2.06293 2.15676 2.40217 3.14125 3.15623 3.21150 3.99104 4.23436 4.62009 4.69890 4.87375 4.91005 5.09666 5.16780 5.25194 5.32908 5.46508 5.52899 5.60042 5.70294 5.72887 5.79740 5.82268 5.92945 5.97181 6.00933 6.21071 6.29752 6.40570 6.42043 6.53475 6.70359 6.95975 7.10471 7.15154 7.33533 7.38223 7.47512 7.54386 7.85934 8.03696 9.04268 9.75538 10.76746 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.032794 B = 0.003696 C = 0.003463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 853.616634 B = 7573.805413 C = 8082.416153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.154 4.154 3 C -0.098 4.098 4 C 0.087 3.913 5 H 0.042 0.958 6 C -0.142 4.142 7 N -0.678 5.678 8 C 0.106 3.894 9 C -0.047 4.047 10 C -0.208 4.208 11 C -0.076 4.076 12 C -0.233 4.233 13 C 0.152 3.848 14 O -0.179 6.179 15 C -0.391 4.391 16 H 0.092 0.908 17 C 0.038 3.962 18 N -0.863 5.863 19 Si 0.940 3.060 20 H -0.267 1.267 21 H -0.276 1.276 22 H -0.276 1.276 23 C -0.166 4.166 24 H 0.095 0.905 25 H 0.095 0.905 26 H 0.109 0.891 27 H 0.072 0.928 28 H 0.083 0.917 29 H 0.052 0.948 30 H 0.056 0.944 31 H 0.063 0.937 32 H 0.342 0.658 33 H 0.077 0.923 34 H 0.032 0.968 35 H 0.100 0.900 36 H 0.106 0.894 37 H 0.126 0.874 38 H 0.269 0.731 39 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.577 1.744 -0.199 17.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.173 4.173 3 C -0.135 4.135 4 C -0.023 4.023 5 H 0.060 0.940 6 C -0.199 4.199 7 N -0.311 5.311 8 C -0.022 4.022 9 C -0.048 4.048 10 C -0.228 4.228 11 C -0.094 4.094 12 C -0.252 4.252 13 C 0.099 3.901 14 O -0.082 6.082 15 C -0.467 4.467 16 H 0.109 0.891 17 C -0.166 4.166 18 N -0.498 5.498 19 Si 0.765 3.235 20 H -0.191 1.191 21 H -0.202 1.202 22 H -0.202 1.202 23 C -0.186 4.186 24 H 0.113 0.887 25 H 0.114 0.886 26 H 0.127 0.873 27 H 0.090 0.910 28 H 0.102 0.898 29 H 0.071 0.929 30 H 0.075 0.925 31 H 0.082 0.918 32 H 0.162 0.838 33 H 0.095 0.905 34 H 0.050 0.950 35 H 0.118 0.882 36 H 0.124 0.876 37 H 0.143 0.857 38 H 0.079 0.921 39 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -16.741 2.555 -0.365 16.939 hybrid contribution -0.082 -1.424 0.287 1.455 sum -16.823 1.130 -0.079 16.862 Atomic orbital electron populations 1.23824 0.95897 1.01709 1.01953 1.23041 0.96139 0.98841 0.99236 1.20987 0.97711 0.95229 0.99583 1.21485 0.90916 0.93357 0.96492 0.94042 1.21810 1.00308 0.94913 1.02918 1.60564 1.35788 1.14828 1.19913 1.20839 0.94826 0.96437 0.90097 1.19166 0.93036 0.93198 0.99416 1.20413 0.98209 0.92479 1.11653 1.20684 0.92835 0.97968 0.97942 1.21177 0.96667 0.96394 1.10994 1.19360 0.86157 0.92345 0.92268 1.83981 1.11427 1.35167 1.77671 1.21365 0.85923 0.87122 1.52321 0.89093 1.25280 0.96821 0.97752 0.96700 1.70050 1.16050 1.17477 1.46235 0.85658 0.79872 0.79714 0.78230 1.19140 1.20165 1.20180 1.20029 0.91223 0.98290 1.09031 0.88685 0.88626 0.87315 0.90953 0.89849 0.92933 0.92473 0.91753 0.83832 0.90507 0.94973 0.88157 0.87619 0.85679 0.92123 0.86516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.63 14.32 29.01 0.42 -1.22 16 2 C -0.15 -1.43 9.02 -36.02 -0.32 -1.76 16 3 C -0.10 -0.92 5.26 -27.88 -0.15 -1.06 16 4 C 0.09 0.95 2.64 -67.71 -0.18 0.77 16 5 H 0.04 0.45 7.80 -51.93 -0.40 0.05 16 6 C -0.14 -1.51 9.41 37.16 0.35 -1.16 16 7 N -0.68 -9.05 6.30 -107.99 -0.68 -9.73 16 8 C 0.11 1.55 5.61 -4.98 -0.03 1.52 16 9 C -0.05 -0.86 5.39 -104.65 -0.56 -1.42 16 10 C -0.21 -3.63 9.70 -39.54 -0.38 -4.01 16 11 C -0.08 -1.42 10.04 -39.61 -0.40 -1.82 16 12 C -0.23 -5.16 9.17 -39.40 -0.36 -5.52 16 13 C 0.15 3.75 6.65 -39.11 -0.26 3.49 16 14 O -0.18 -5.20 9.76 0.08 0.00 -5.20 16 15 C -0.39 -11.08 9.49 30.89 0.29 -10.79 16 16 H 0.09 2.39 5.20 -52.49 -0.27 2.12 16 17 C 0.04 1.07 5.49 -17.51 -0.10 0.97 16 18 N -0.86 -25.60 13.67 55.48 0.76 -24.84 16 19 Si 0.94 20.74 29.55 -169.99 -5.02 15.72 16 20 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 21 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 22 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 23 C -0.17 -3.60 9.65 -39.39 -0.38 -3.98 16 24 H 0.09 0.70 7.84 -52.49 -0.41 0.29 16 25 H 0.10 0.71 8.06 -52.48 -0.42 0.29 16 26 H 0.11 1.03 6.94 -52.49 -0.36 0.67 16 27 H 0.07 0.59 7.79 -51.93 -0.40 0.18 16 28 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.06 0.65 7.45 -51.93 -0.39 0.26 16 31 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.34 4.42 6.74 -39.29 -0.26 4.16 16 33 H 0.08 1.12 7.38 -51.93 -0.38 0.74 16 34 H 0.03 0.43 8.00 -51.93 -0.42 0.01 16 35 H 0.10 1.48 8.06 -52.48 -0.42 1.06 16 36 H 0.11 1.66 8.06 -52.48 -0.42 1.24 16 37 H 0.13 2.78 5.64 -52.49 -0.30 2.48 16 38 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 39 H 0.12 2.53 8.06 -52.48 -0.42 2.10 16 LS Contribution 328.17 15.07 4.95 4.95 Total: -1.00 -30.34 328.17 -7.76 -38.10 By element: Atomic # 1 Polarization: 12.69 SS G_CDS: -5.70 Total: 6.99 kcal Atomic # 6 Polarization: -23.93 SS G_CDS: -2.06 Total: -25.99 kcal Atomic # 7 Polarization: -34.65 SS G_CDS: 0.08 Total: -34.57 kcal Atomic # 8 Polarization: -5.20 SS G_CDS: 0.00 Total: -5.20 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -30.34 -7.76 -38.10 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000162637144.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.282 kcal (2) G-P(sol) polarization free energy of solvation -30.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.098 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds