Wall clock time and date at job start Mon Mar 30 2020 06:20:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50708 * 119.99346 * 2 1 4 4 C 1.53002 * 109.46958 * 125.00392 * 3 2 1 5 5 H 1.08995 * 109.47089 * 304.99862 * 4 3 2 6 6 C 1.52996 * 109.47019 * 184.99717 * 4 3 2 7 7 N 1.46904 * 109.47215 * 64.99284 * 4 3 2 8 8 C 1.46896 * 110.99978 * 204.99910 * 7 4 3 9 9 C 1.50700 * 109.47082 * 180.02562 * 8 7 4 10 10 C 1.38318 * 119.96924 * 269.72335 * 9 8 7 11 11 C 1.38277 * 120.13852 * 179.76314 * 10 9 8 12 12 C 1.38123 * 120.06962 * 0.51582 * 11 10 9 13 13 C 1.38851 * 119.93253 * 359.74106 * 12 11 10 14 14 O 1.35742 * 120.07214 * 179.97438 * 13 12 11 15 15 C 1.34828 * 116.99935 * 354.49043 * 14 13 12 16 16 H 1.07996 * 120.00312 * 5.05057 * 15 14 13 17 17 C 1.38661 * 120.00031 * 185.05555 * 15 14 13 18 18 N 1.31556 * 120.00067 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 120.00065 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.47186 * 359.97438 * 19 17 15 21 21 H 1.48501 * 109.47163 * 120.00031 * 19 17 15 22 22 H 1.48506 * 109.47294 * 240.00345 * 19 17 15 23 23 C 1.38084 * 119.96207 * 90.00149 * 9 8 7 24 24 H 1.08001 * 120.00451 * 359.97438 * 1 2 3 25 25 H 1.08006 * 119.99724 * 180.02562 * 1 2 3 26 26 H 1.07993 * 120.00188 * 180.02562 * 2 1 3 27 27 H 1.08994 * 109.47595 * 5.00160 * 3 2 1 28 28 H 1.08996 * 109.46370 * 244.99933 * 3 2 1 29 29 H 1.08994 * 109.47220 * 59.99992 * 6 4 3 30 30 H 1.09000 * 109.46984 * 179.97438 * 6 4 3 31 31 H 1.09004 * 109.47123 * 299.99455 * 6 4 3 32 32 H 1.00898 * 111.00176 * 328.95961 * 7 4 3 33 33 H 1.09004 * 109.47446 * 300.00177 * 8 7 4 34 34 H 1.09000 * 109.46785 * 60.00498 * 8 7 4 35 35 H 1.08005 * 119.93001 * 0.02562 * 10 9 8 36 36 H 1.08007 * 119.96371 * 180.25721 * 11 10 9 37 37 H 1.07999 * 120.03460 * 179.76420 * 12 11 10 38 38 H 0.96995 * 120.00082 * 180.02562 * 18 17 15 39 39 H 1.08003 * 120.03695 * 359.95436 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3053 0.0000 4 6 3.0350 1.3333 1.1816 5 1 2.4883 1.1470 2.1060 6 6 3.7090 2.7048 1.2552 7 7 4.0574 0.2942 0.9996 8 6 4.6207 -0.1219 2.2909 9 6 5.6639 -1.1857 2.0644 10 6 5.3004 -2.5203 2.0611 11 6 6.2538 -3.4990 1.8488 12 6 7.5746 -3.1470 1.6499 13 6 7.9436 -1.8084 1.6580 14 8 9.2409 -1.4594 1.4633 15 6 10.1389 -2.4618 1.3819 16 1 9.8042 -3.4885 1.3892 17 6 11.4922 -2.1744 1.2891 18 7 11.9000 -0.9236 1.2809 19 14 12.7364 -3.5631 1.1771 20 1 12.0267 -4.8672 1.2078 21 1 13.4987 -3.4436 -0.0917 22 1 13.6729 -3.4827 2.3268 23 6 6.9826 -0.8273 1.8662 24 1 -0.5401 0.9353 0.0004 25 1 -0.5400 -0.9354 0.0004 26 1 1.8500 -0.9352 -0.0004 27 1 1.3585 2.1317 0.0896 28 1 2.6211 1.4027 -0.9314 29 1 2.9504 3.4757 1.3902 30 1 4.4009 2.7249 2.0972 31 1 4.2558 2.8910 0.3308 32 1 3.6839 -0.4965 0.4963 33 1 5.0788 0.7371 2.7813 34 1 3.8265 -0.5200 2.9223 35 1 4.2690 -2.7982 2.2205 36 1 5.9662 -4.5400 1.8427 37 1 8.3194 -3.9121 1.4880 38 1 12.8466 -0.7226 1.2156 39 1 7.2665 0.2147 1.8726 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000162637144.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:42 Heat of formation + Delta-G solvation = -11.435288 kcal Electronic energy + Delta-G solvation = -18675.881444 eV Core-core repulsion = 15776.449424 eV Total energy + Delta-G solvation = -2899.432021 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.80715 -39.09945 -37.96005 -35.02347 -34.26977 -32.83883 -31.06872 -30.06640 -27.68768 -27.35143 -25.66898 -23.22015 -22.24860 -21.79439 -20.45955 -19.51549 -18.76537 -17.05288 -16.78759 -16.61541 -16.35567 -16.04981 -15.64777 -15.35814 -14.94250 -14.70279 -14.35911 -14.02365 -13.75143 -13.66811 -13.30719 -13.20548 -12.99359 -12.81280 -12.53240 -12.35562 -12.27220 -12.09947 -11.99554 -11.86505 -11.61466 -11.15682 -10.81020 -10.18872 -9.67472 -9.31642 -8.97340 -8.46274 -6.14886 0.53844 0.75249 1.34983 1.41431 1.43699 1.53649 2.18104 2.79612 3.11485 3.39051 3.52665 3.89940 3.99206 4.09290 4.14158 4.20937 4.33394 4.43775 4.47530 4.58141 4.61886 4.67871 4.76930 4.81405 4.96724 4.99877 5.10096 5.11663 5.13945 5.16575 5.31792 5.43611 5.67752 5.74371 5.77058 5.78227 5.86534 6.03917 6.14113 6.26653 6.51959 6.98376 7.80530 8.77484 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.032794 B = 0.003696 C = 0.003463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 853.616634 B = 7573.805413 C = 8082.416153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.171 4.171 3 C -0.091 4.091 4 C 0.090 3.910 5 H 0.049 0.951 6 C -0.142 4.142 7 N -0.691 5.691 8 C 0.112 3.888 9 C -0.038 4.038 10 C -0.184 4.184 11 C -0.071 4.071 12 C -0.245 4.245 13 C 0.112 3.888 14 O -0.235 6.235 15 C -0.413 4.413 16 H 0.101 0.899 17 C -0.025 4.025 18 N -0.922 5.922 19 Si 1.020 2.980 20 H -0.251 1.251 21 H -0.268 1.268 22 H -0.268 1.268 23 C -0.183 4.183 24 H 0.105 0.895 25 H 0.104 0.896 26 H 0.105 0.895 27 H 0.087 0.913 28 H 0.073 0.927 29 H 0.074 0.926 30 H 0.044 0.956 31 H 0.050 0.950 32 H 0.345 0.655 33 H 0.072 0.928 34 H 0.058 0.942 35 H 0.146 0.854 36 H 0.146 0.854 37 H 0.117 0.883 38 H 0.272 0.728 39 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.705 0.075 0.138 20.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.190 4.190 3 C -0.129 4.129 4 C -0.019 4.019 5 H 0.067 0.933 6 C -0.200 4.200 7 N -0.325 5.325 8 C -0.016 4.016 9 C -0.038 4.038 10 C -0.203 4.203 11 C -0.089 4.089 12 C -0.265 4.265 13 C 0.062 3.938 14 O -0.142 6.142 15 C -0.489 4.489 16 H 0.119 0.881 17 C -0.222 4.222 18 N -0.560 5.560 19 Si 0.839 3.161 20 H -0.174 1.174 21 H -0.193 1.193 22 H -0.193 1.193 23 C -0.203 4.203 24 H 0.123 0.877 25 H 0.122 0.878 26 H 0.123 0.877 27 H 0.106 0.894 28 H 0.092 0.908 29 H 0.093 0.907 30 H 0.063 0.937 31 H 0.070 0.930 32 H 0.166 0.834 33 H 0.090 0.910 34 H 0.076 0.924 35 H 0.164 0.836 36 H 0.164 0.836 37 H 0.135 0.865 38 H 0.081 0.919 39 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -19.938 0.877 -0.024 19.957 hybrid contribution 0.498 -0.872 0.216 1.027 sum -19.440 0.005 0.192 19.441 Atomic orbital electron populations 1.24013 0.95627 1.02662 1.00136 1.23023 0.96543 0.98505 1.00888 1.20920 0.97503 0.96116 0.98322 1.21525 0.90554 0.92280 0.97581 0.93258 1.21824 1.00641 0.95812 1.01704 1.60505 1.37213 1.15516 1.19297 1.20784 0.94411 0.95289 0.91163 1.19585 0.92148 0.95053 0.97029 1.20973 1.00070 0.91506 1.07740 1.21129 0.91187 1.00471 0.96090 1.21300 0.98483 0.95052 1.11629 1.19910 0.85374 0.94372 0.94144 1.83943 1.13297 1.36258 1.80674 1.21869 0.86665 0.87695 1.52691 0.88123 1.26613 0.98754 1.00811 0.95989 1.70198 1.16670 1.20218 1.48960 0.84514 0.76643 0.76382 0.78543 1.17413 1.19323 1.19325 1.20204 0.92654 0.97319 1.10157 0.87694 0.87775 0.87669 0.89426 0.90843 0.90725 0.93683 0.93050 0.83435 0.91006 0.92375 0.83625 0.83628 0.86473 0.91874 0.87957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.51 14.32 67.78 0.97 -1.54 16 2 C -0.17 -2.70 9.02 25.65 0.23 -2.47 16 3 C -0.09 -1.50 5.26 29.85 0.16 -1.34 16 4 C 0.09 1.75 2.64 44.91 0.12 1.87 16 5 H 0.05 0.91 7.80 -2.39 -0.02 0.90 16 6 C -0.14 -2.85 9.41 71.98 0.68 -2.17 16 7 N -0.69 -17.13 6.30 -495.58 -3.12 -20.25 16 8 C 0.11 3.00 5.61 85.56 0.48 3.48 16 9 C -0.04 -1.29 5.39 -19.88 -0.11 -1.40 16 10 C -0.18 -5.68 9.70 22.30 0.22 -5.46 16 11 C -0.07 -2.43 10.04 22.25 0.22 -2.21 16 12 C -0.25 -10.91 9.17 22.39 0.21 -10.71 16 13 C 0.11 5.78 6.65 22.58 0.15 5.93 16 14 O -0.23 -14.61 9.76 -22.63 -0.22 -14.83 16 15 C -0.41 -24.65 9.49 67.92 0.64 -24.00 16 16 H 0.10 5.52 5.20 -2.91 -0.02 5.50 16 17 C -0.02 -1.42 5.49 84.84 0.47 -0.96 16 18 N -0.92 -57.79 13.67 21.62 0.30 -57.50 16 19 Si 1.02 43.63 29.55 68.60 2.03 45.65 16 20 H -0.25 -9.88 7.11 99.48 0.71 -9.17 16 21 H -0.27 -10.99 7.11 99.48 0.71 -10.29 16 22 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 23 C -0.18 -8.22 9.65 22.39 0.22 -8.00 16 24 H 0.10 1.18 7.84 -2.91 -0.02 1.16 16 25 H 0.10 1.21 8.06 -2.91 -0.02 1.18 16 26 H 0.11 1.71 6.94 -2.91 -0.02 1.69 16 27 H 0.09 1.17 7.79 -2.39 -0.02 1.15 16 28 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 29 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 30 H 0.04 1.00 7.45 -2.39 -0.02 0.98 16 31 H 0.05 1.15 8.14 -2.38 -0.02 1.13 16 32 H 0.35 8.06 6.74 -89.70 -0.60 7.45 16 33 H 0.07 2.02 7.38 -2.38 -0.02 2.00 16 34 H 0.06 1.29 8.00 -2.39 -0.02 1.27 16 35 H 0.15 3.32 8.06 -2.91 -0.02 3.30 16 36 H 0.15 3.87 8.06 -2.91 -0.02 3.84 16 37 H 0.12 5.30 5.64 -2.91 -0.02 5.29 16 38 H 0.27 15.55 8.31 -92.71 -0.77 14.78 16 39 H 0.10 4.75 8.06 -2.91 -0.02 4.72 16 Total: -1.00 -70.90 328.17 4.06 -66.84 By element: Atomic # 1 Polarization: 28.65 SS G_CDS: 0.43 Total: 29.07 kcal Atomic # 6 Polarization: -53.64 SS G_CDS: 4.65 Total: -48.99 kcal Atomic # 7 Polarization: -74.92 SS G_CDS: -2.83 Total: -77.75 kcal Atomic # 8 Polarization: -14.61 SS G_CDS: -0.22 Total: -14.83 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 2.03 Total: 45.65 kcal Total: -70.90 4.06 -66.84 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000162637144.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.404 kcal (2) G-P(sol) polarization free energy of solvation -70.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.839 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds