Wall clock time and date at job start Mon Mar 30 2020 06:20:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50700 * 120.00161 * 2 1 4 4 C 1.53005 * 109.47090 * 124.99872 * 3 2 1 5 5 H 1.08999 * 109.46341 * 55.00306 * 4 3 2 6 6 C 1.52998 * 109.46998 * 175.00110 * 4 3 2 7 7 N 1.46903 * 109.47111 * 295.00341 * 4 3 2 8 8 C 1.46903 * 110.99533 * 155.00014 * 7 4 3 9 9 C 1.50698 * 109.46952 * 179.97438 * 8 7 4 10 10 C 1.38324 * 119.96481 * 269.72551 * 9 8 7 11 11 C 1.38279 * 120.13519 * 179.76706 * 10 9 8 12 12 C 1.38119 * 120.07018 * 0.50588 * 11 10 9 13 13 C 1.38857 * 119.93111 * 359.74904 * 12 11 10 14 14 O 1.35752 * 120.06695 * 179.97438 * 13 12 11 15 15 C 1.34826 * 117.00143 * 354.48853 * 14 13 12 16 16 H 1.08003 * 120.00067 * 5.05506 * 15 14 13 17 17 C 1.38659 * 119.99730 * 185.05735 * 15 14 13 18 18 N 1.31564 * 119.99502 * 179.97438 * 17 15 14 19 19 Si 1.86792 * 120.00271 * 359.97438 * 17 15 14 20 20 H 1.48496 * 109.47210 * 89.99762 * 19 17 15 21 21 H 1.48498 * 109.47258 * 210.00248 * 19 17 15 22 22 H 1.48503 * 109.47094 * 330.00139 * 19 17 15 23 23 C 1.38083 * 119.96524 * 89.99822 * 9 8 7 24 24 H 1.07999 * 119.99773 * 180.02562 * 1 2 3 25 25 H 1.08007 * 120.00106 * 359.71912 * 1 2 3 26 26 H 1.08001 * 120.00029 * 180.02562 * 2 1 3 27 27 H 1.08997 * 109.47531 * 245.00502 * 3 2 1 28 28 H 1.09007 * 109.47042 * 5.00534 * 3 2 1 29 29 H 1.09002 * 109.47024 * 180.02562 * 6 4 3 30 30 H 1.09000 * 109.47329 * 300.00360 * 6 4 3 31 31 H 1.09005 * 109.47021 * 60.00263 * 6 4 3 32 32 H 1.00900 * 110.99524 * 278.95099 * 7 4 3 33 33 H 1.09000 * 109.47095 * 299.99645 * 8 7 4 34 34 H 1.08999 * 109.46961 * 60.00088 * 8 7 4 35 35 H 1.07997 * 119.93225 * 359.97438 * 10 9 8 36 36 H 1.08003 * 119.96572 * 180.25121 * 11 10 9 37 37 H 1.08004 * 120.03200 * 179.77072 * 12 11 10 38 38 H 0.97005 * 119.99478 * 180.02562 * 18 17 15 39 39 H 1.07998 * 120.03116 * 359.95621 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0351 1.3330 1.1817 5 1 3.6827 0.4572 1.1403 6 6 3.8876 2.6015 1.1111 7 7 2.2765 1.3222 2.4397 8 6 3.0819 0.7662 3.5352 9 6 2.2727 0.7718 4.8065 10 6 2.3155 1.8689 5.6479 11 6 1.5707 1.8798 6.8128 12 6 0.7895 0.7902 7.1450 13 6 0.7485 -0.3148 6.3051 14 8 -0.0179 -1.3874 6.6292 15 6 -0.6245 -1.3649 7.8331 16 1 -0.5563 -0.4851 8.4558 17 6 -1.3358 -2.4714 8.2717 18 7 -1.9273 -2.4496 9.4466 19 14 -1.4543 -3.9927 7.1943 20 1 -0.3252 -4.9066 7.5025 21 1 -2.7399 -4.6875 7.4586 22 1 -1.3921 -3.5935 5.7654 23 6 1.4937 -0.3206 5.1330 24 1 -0.5400 -0.9353 0.0004 25 1 -0.5401 0.9353 0.0046 26 1 1.8500 -0.9353 -0.0004 27 1 2.6213 1.4027 -0.9314 28 1 1.3586 2.1317 0.0897 29 1 4.5800 2.6212 1.9527 30 1 4.4504 2.6096 0.1777 31 1 3.2399 3.4773 1.1524 32 1 1.9433 2.2466 2.6689 33 1 3.3697 -0.2566 3.2918 34 1 3.9771 1.3728 3.6721 35 1 2.9293 2.7201 5.3927 36 1 1.6030 2.7395 7.4658 37 1 0.2109 0.7979 8.0570 38 1 -2.4247 -3.2238 9.7536 39 1 1.4636 -1.1783 4.4775 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000162637277.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:44 Heat of formation + Delta-G solvation = -8.773231 kcal Electronic energy + Delta-G solvation = -18858.259497 eV Core-core repulsion = 15958.942912 eV Total energy + Delta-G solvation = -2899.316585 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.91257 -39.09509 -37.96472 -35.04316 -34.44327 -32.85253 -31.14322 -30.04377 -27.42025 -27.29246 -25.73171 -23.28475 -22.11550 -21.79342 -20.62906 -19.65126 -18.85541 -16.90001 -16.67177 -16.60477 -16.38978 -15.77468 -15.64464 -15.29333 -14.99709 -14.59537 -14.47753 -14.29314 -14.10495 -13.65721 -13.48483 -13.17339 -12.95705 -12.81036 -12.48902 -12.42444 -12.37916 -12.18927 -11.89739 -11.68953 -11.63284 -11.26419 -10.91405 -10.03821 -9.69573 -9.22653 -9.02801 -8.50440 -6.22848 0.51320 0.70202 1.30012 1.34120 1.51141 1.59776 2.27733 2.74016 3.04401 3.09419 3.49921 3.90760 4.00511 4.09782 4.21869 4.32757 4.41436 4.42321 4.49016 4.56646 4.61618 4.68707 4.75222 4.82701 4.98586 5.01224 5.03478 5.16685 5.20196 5.26516 5.36496 5.40415 5.68433 5.74762 5.79426 5.88775 5.92432 6.05366 6.18837 6.28652 6.56797 6.84310 7.60155 8.61379 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.020607 B = 0.004769 C = 0.004046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1358.407747 B = 5870.426477 C = 6918.514061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.136 4.136 3 C -0.079 4.079 4 C 0.088 3.912 5 H 0.078 0.922 6 C -0.177 4.177 7 N -0.687 5.687 8 C 0.114 3.886 9 C -0.039 4.039 10 C -0.173 4.173 11 C -0.076 4.076 12 C -0.240 4.240 13 C 0.117 3.883 14 O -0.248 6.248 15 C -0.399 4.399 16 H 0.081 0.919 17 C 0.011 3.989 18 N -0.924 5.924 19 Si 0.969 3.031 20 H -0.265 1.265 21 H -0.266 1.266 22 H -0.266 1.266 23 C -0.171 4.171 24 H 0.087 0.913 25 H 0.093 0.907 26 H 0.102 0.898 27 H 0.090 0.910 28 H 0.064 0.936 29 H 0.056 0.944 30 H 0.073 0.927 31 H 0.060 0.940 32 H 0.344 0.656 33 H 0.075 0.925 34 H 0.060 0.940 35 H 0.148 0.852 36 H 0.140 0.860 37 H 0.106 0.894 38 H 0.285 0.715 39 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.109 9.314 -18.261 23.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C -0.154 4.154 3 C -0.116 4.116 4 C -0.022 4.022 5 H 0.096 0.904 6 C -0.236 4.236 7 N -0.319 5.319 8 C -0.015 4.015 9 C -0.039 4.039 10 C -0.192 4.192 11 C -0.094 4.094 12 C -0.259 4.259 13 C 0.068 3.932 14 O -0.156 6.156 15 C -0.476 4.476 16 H 0.098 0.902 17 C -0.187 4.187 18 N -0.565 5.565 19 Si 0.791 3.209 20 H -0.190 1.190 21 H -0.190 1.190 22 H -0.191 1.191 23 C -0.191 4.191 24 H 0.105 0.895 25 H 0.111 0.889 26 H 0.120 0.880 27 H 0.108 0.892 28 H 0.083 0.917 29 H 0.075 0.925 30 H 0.092 0.908 31 H 0.079 0.921 32 H 0.163 0.837 33 H 0.093 0.907 34 H 0.078 0.922 35 H 0.166 0.834 36 H 0.158 0.842 37 H 0.124 0.876 38 H 0.094 0.906 39 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 11.626 8.409 -18.381 23.318 hybrid contribution -0.145 -0.042 0.764 0.779 sum 11.481 8.367 -17.617 22.631 Atomic orbital electron populations 1.23774 0.96543 1.01345 1.03099 1.22861 0.95790 0.98720 0.97994 1.20785 0.98065 0.94996 0.97773 1.21571 0.93368 0.98325 0.88903 0.90376 1.22453 1.00379 0.97841 1.02918 1.60518 1.39510 1.29624 1.02210 1.20761 0.93127 1.00808 0.86771 1.19641 0.95798 0.92413 0.96075 1.21021 1.03461 0.99285 0.95444 1.21111 0.94432 0.96671 0.97197 1.21321 1.06425 0.96022 1.02144 1.19655 0.91121 0.87383 0.94999 1.83518 1.57360 1.39118 1.35557 1.20719 1.30979 1.03408 0.92463 0.90170 1.25252 0.95064 1.01228 0.97179 1.69733 1.34335 1.32831 1.19558 0.85241 0.78441 0.77983 0.79196 1.18960 1.19019 1.19072 1.20241 1.01317 1.01359 0.96148 0.89484 0.88870 0.87969 0.89172 0.91742 0.92510 0.90838 0.92139 0.83714 0.90657 0.92237 0.83412 0.84180 0.87601 0.90577 0.86622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -4.73 14.32 67.78 0.97 -3.76 16 2 C -0.14 -2.75 9.25 25.65 0.24 -2.51 16 3 C -0.08 -1.24 5.34 29.85 0.16 -1.09 16 4 C 0.09 1.38 2.58 44.92 0.12 1.50 16 5 H 0.08 1.25 7.80 -2.39 -0.02 1.23 16 6 C -0.18 -2.09 9.16 71.98 0.66 -1.43 16 7 N -0.69 -14.44 5.95 -495.56 -2.95 -17.39 16 8 C 0.11 2.58 5.61 85.56 0.48 3.06 16 9 C -0.04 -1.20 5.39 -19.88 -0.11 -1.31 16 10 C -0.17 -5.03 9.70 22.30 0.22 -4.81 16 11 C -0.08 -2.61 10.04 22.25 0.22 -2.39 16 12 C -0.24 -10.78 9.17 22.39 0.21 -10.57 16 13 C 0.12 5.68 6.65 22.58 0.15 5.83 16 14 O -0.25 -13.97 8.59 -22.73 -0.20 -14.17 16 15 C -0.40 -24.20 9.95 67.92 0.68 -23.52 16 16 H 0.08 5.07 5.44 -2.91 -0.02 5.06 16 17 C 0.01 0.65 5.49 84.83 0.47 1.12 16 18 N -0.92 -56.15 13.96 21.62 0.30 -55.85 16 19 Si 0.97 46.71 28.62 68.60 1.96 48.67 16 20 H -0.26 -12.21 7.11 99.48 0.71 -11.51 16 21 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 22 H -0.27 -12.98 7.11 99.48 0.71 -12.27 16 23 C -0.17 -6.86 9.65 22.39 0.22 -6.64 16 24 H 0.09 1.98 8.06 -2.91 -0.02 1.95 16 25 H 0.09 2.02 7.84 -2.91 -0.02 1.99 16 26 H 0.10 2.02 8.06 -2.91 -0.02 2.00 16 27 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 28 H 0.06 1.06 7.79 -2.38 -0.02 1.05 16 29 H 0.06 0.68 7.45 -2.39 -0.02 0.66 16 30 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.06 0.70 8.13 -2.38 -0.02 0.68 16 32 H 0.34 6.95 8.46 -89.69 -0.76 6.19 16 33 H 0.08 1.75 8.00 -2.39 -0.02 1.73 16 34 H 0.06 1.08 7.38 -2.39 -0.02 1.07 16 35 H 0.15 3.10 8.06 -2.91 -0.02 3.07 16 36 H 0.14 3.90 8.06 -2.91 -0.02 3.88 16 37 H 0.11 5.24 5.64 -2.91 -0.02 5.22 16 38 H 0.28 15.84 8.31 -92.70 -0.77 15.07 16 39 H 0.12 4.57 8.06 -2.91 -0.02 4.55 16 Total: -1.00 -67.12 329.53 4.06 -63.07 By element: Atomic # 1 Polarization: 21.92 SS G_CDS: 0.27 Total: 22.19 kcal Atomic # 6 Polarization: -51.19 SS G_CDS: 4.67 Total: -46.52 kcal Atomic # 7 Polarization: -70.58 SS G_CDS: -2.65 Total: -73.23 kcal Atomic # 8 Polarization: -13.97 SS G_CDS: -0.20 Total: -14.17 kcal Atomic # 14 Polarization: 46.71 SS G_CDS: 1.96 Total: 48.67 kcal Total: -67.12 4.06 -63.07 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000162637277.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.293 kcal (2) G-P(sol) polarization free energy of solvation -67.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.066 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds