Wall clock time and date at job start Mon Mar 30 2020 06:19:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08990 * 109.47173 * 2 1 4 4 C 1.50705 * 109.47260 * 239.99668 * 2 1 3 5 5 H 1.07991 * 119.99976 * 240.00314 * 4 2 1 6 6 C 1.37885 * 119.99592 * 60.00206 * 4 2 1 7 7 N 1.31512 * 119.99797 * 359.97438 * 6 4 2 8 8 Si 1.86793 * 119.99577 * 179.97438 * 6 4 2 9 9 H 1.48508 * 109.47084 * 90.00586 * 8 6 4 10 10 H 1.48501 * 109.46906 * 209.99925 * 8 6 4 11 11 H 1.48496 * 109.47712 * 330.00110 * 8 6 4 12 12 N 1.46499 * 109.46843 * 120.00201 * 2 1 3 13 13 C 1.34784 * 119.99893 * 274.99901 * 12 2 1 14 14 O 1.21283 * 119.99649 * 0.02562 * 13 12 2 15 15 C 1.50697 * 119.99774 * 179.72962 * 13 12 2 16 16 H 1.09001 * 109.46809 * 299.99238 * 15 13 12 17 17 C 1.52998 * 109.47737 * 59.99989 * 15 13 12 18 18 C 1.53003 * 109.46624 * 180.02562 * 15 13 12 19 19 C 1.50703 * 109.46714 * 174.99855 * 18 15 13 20 20 C 1.38239 * 119.99926 * 269.72293 * 19 18 15 21 21 C 1.38235 * 119.99599 * 179.77206 * 20 19 18 22 22 C 1.38232 * 120.00390 * 0.50348 * 21 20 19 23 23 C 1.38233 * 119.99622 * 359.74941 * 22 21 20 24 24 C 1.38232 * 120.00252 * 359.97438 * 23 22 21 25 25 H 1.08997 * 109.47450 * 300.00199 * 1 2 3 26 26 H 1.08998 * 109.47317 * 60.00174 * 1 2 3 27 27 H 1.09007 * 109.47248 * 179.97438 * 1 2 3 28 28 H 0.97008 * 119.99478 * 179.97438 * 7 6 4 29 29 H 0.97005 * 120.00261 * 95.00113 * 12 2 1 30 30 H 1.08998 * 109.46893 * 59.99480 * 17 15 13 31 31 H 1.08994 * 109.47310 * 179.97438 * 17 15 13 32 32 H 1.09006 * 109.46641 * 299.99898 * 17 15 13 33 33 H 1.08999 * 109.47096 * 294.99050 * 18 15 13 34 34 H 1.08993 * 109.47325 * 54.99830 * 18 15 13 35 35 H 1.07999 * 119.99947 * 359.97438 * 20 19 18 36 36 H 1.08002 * 119.99553 * 180.22943 * 21 20 19 37 37 H 1.07997 * 120.00126 * 179.73019 * 22 21 20 38 38 H 1.08007 * 119.99420 * 179.97438 * 23 22 21 39 39 H 1.08000 * 119.99969 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6532 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4828 7 7 0.9428 0.8296 -2.6034 8 14 2.3225 -1.1196 -4.0079 9 1 1.3448 -2.1616 -4.4124 10 1 2.4873 -0.1403 -5.1120 11 1 3.6308 -1.7567 -3.7119 12 7 2.0182 -0.6907 1.1962 13 6 2.1469 -0.0183 2.3572 14 8 1.8581 1.1584 2.4117 15 6 2.6434 -0.7302 3.5891 16 1 1.9668 -1.5493 3.8328 17 6 4.0443 -1.2866 3.3270 18 6 2.6955 0.2531 4.7602 19 6 3.0736 -0.4844 6.0188 20 6 2.0896 -1.0254 6.8250 21 6 2.4367 -1.7060 7.9771 22 6 3.7672 -1.8365 8.3285 23 6 4.7509 -1.2909 7.5250 24 6 4.4042 -0.6153 6.3700 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 0.7088 1.1612 -3.4845 29 1 2.2490 -1.6319 1.1526 30 1 4.7208 -0.4675 3.0833 31 1 4.4035 -1.8011 4.2182 32 1 4.0067 -1.9873 2.4928 33 1 3.4376 1.0244 4.5542 34 1 1.7171 0.7156 4.8900 35 1 1.0498 -0.9192 6.5530 36 1 1.6681 -2.1319 8.6050 37 1 4.0381 -2.3644 9.2308 38 1 5.7905 -1.3926 7.7998 39 1 5.1727 -0.1888 5.7425 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171821511.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:23 Heat of formation + Delta-G solvation = -36.396265 kcal Electronic energy + Delta-G solvation = -19060.592692 eV Core-core repulsion = 16160.078282 eV Total energy + Delta-G solvation = -2900.514410 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.74156 -38.73870 -35.12052 -34.41804 -32.39014 -31.04310 -30.81065 -28.62352 -26.62652 -25.25130 -23.65969 -22.55474 -21.40384 -20.22464 -19.13857 -17.20370 -16.74826 -15.76749 -15.36389 -15.30260 -14.97637 -14.52466 -14.38055 -13.51380 -13.41436 -13.27889 -12.87277 -12.61292 -12.38993 -12.27651 -11.92361 -11.64826 -11.23023 -11.13362 -11.02284 -10.93532 -10.89713 -10.74748 -10.68113 -10.30435 -10.22557 -9.03278 -9.02040 -8.92311 -8.67121 -8.53415 -7.86685 -6.11375 -4.20578 1.28898 1.32419 3.24521 3.31349 3.33556 3.45314 3.69359 4.13469 4.38829 4.79494 4.84366 4.93585 5.05744 5.08033 5.18830 5.21222 5.35968 5.45554 5.46793 5.72695 5.83083 5.86530 5.94084 6.01886 6.08581 6.31972 6.33562 6.41059 6.42590 6.65736 6.84329 6.94454 6.98523 7.17306 7.49655 7.58732 7.71335 7.93602 8.16803 8.70818 8.80094 9.17457 9.47291 10.94584 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.042013 B = 0.003729 C = 0.003586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 666.302197 B = 7506.187235 C = 7806.598399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.264 3.736 3 H 0.048 0.952 4 C -0.533 4.533 5 H 0.061 0.939 6 C 0.066 3.934 7 N -0.884 5.884 8 Si 0.901 3.099 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.274 1.274 12 N -0.708 5.708 13 C 0.505 3.495 14 O -0.557 6.557 15 C -0.106 4.106 16 H 0.090 0.910 17 C -0.145 4.145 18 C -0.063 4.063 19 C -0.071 4.071 20 C -0.118 4.118 21 C -0.120 4.120 22 C -0.131 4.131 23 C -0.121 4.121 24 C -0.115 4.115 25 H 0.014 0.986 26 H 0.090 0.910 27 H 0.025 0.975 28 H 0.264 0.736 29 H 0.388 0.612 30 H 0.059 0.941 31 H 0.064 0.936 32 H 0.061 0.939 33 H 0.078 0.922 34 H 0.081 0.919 35 H 0.122 0.878 36 H 0.119 0.881 37 H 0.117 0.883 38 H 0.119 0.881 39 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.165 -6.423 17.723 19.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.162 3.838 3 H 0.066 0.934 4 C -0.572 4.572 5 H 0.079 0.921 6 C -0.138 4.138 7 N -0.521 5.521 8 Si 0.729 3.271 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.199 1.199 12 N -0.356 5.356 13 C 0.289 3.711 14 O -0.436 6.436 15 C -0.127 4.127 16 H 0.108 0.892 17 C -0.202 4.202 18 C -0.101 4.101 19 C -0.071 4.071 20 C -0.136 4.136 21 C -0.138 4.138 22 C -0.149 4.149 23 C -0.139 4.139 24 C -0.133 4.133 25 H 0.033 0.967 26 H 0.108 0.892 27 H 0.045 0.955 28 H 0.074 0.926 29 H 0.220 0.780 30 H 0.079 0.921 31 H 0.083 0.917 32 H 0.080 0.920 33 H 0.097 0.903 34 H 0.099 0.901 35 H 0.140 0.860 36 H 0.137 0.863 37 H 0.135 0.865 38 H 0.137 0.863 39 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 4.863 -5.444 17.566 19.023 hybrid contribution 0.357 -0.994 -0.887 1.379 sum 5.220 -6.438 16.679 18.625 Atomic orbital electron populations 1.22076 0.98561 0.99048 1.00862 1.18726 0.90968 0.93987 0.80141 0.93433 1.21231 1.32383 1.13167 0.90381 0.92116 1.24895 0.94848 0.94950 0.99062 1.69909 1.35929 1.22450 1.23837 0.86452 0.79169 0.79271 0.82229 1.20557 1.21074 1.19856 1.46525 1.64945 1.13501 1.10590 1.20393 0.78422 0.87457 0.84807 1.90645 1.51505 1.16216 1.85266 1.21270 0.98834 0.98843 0.93781 0.89158 1.21835 0.95076 1.01272 1.02023 1.20422 1.03561 0.96477 0.89604 1.20014 0.93301 0.97596 0.96232 1.21124 0.99378 0.98237 0.94852 1.21128 0.96269 0.99324 0.97098 1.21101 0.93180 1.00703 0.99876 1.21134 0.99235 0.98443 0.95108 1.21125 0.95855 0.99482 0.96884 0.96689 0.89188 0.95533 0.92599 0.77977 0.92141 0.91744 0.91968 0.90300 0.90087 0.86029 0.86311 0.86473 0.86310 0.85976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.70 9.26 37.16 0.34 -3.36 16 2 C 0.26 6.78 2.56 -69.08 -0.18 6.60 16 3 H 0.05 1.41 7.58 -51.93 -0.39 1.02 16 4 C -0.53 -14.23 8.73 -34.44 -0.30 -14.53 16 5 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 6 C 0.07 1.77 5.30 -17.82 -0.09 1.68 16 7 N -0.88 -25.08 11.32 55.43 0.63 -24.45 16 8 Si 0.90 20.71 29.54 -169.99 -5.02 15.69 16 9 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 10 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 11 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 12 N -0.71 -14.84 4.96 -54.93 -0.27 -15.11 16 13 C 0.50 10.03 7.12 -10.98 -0.08 9.95 16 14 O -0.56 -13.31 15.58 5.56 0.09 -13.22 16 15 C -0.11 -1.53 2.71 -91.77 -0.25 -1.78 16 16 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 17 C -0.14 -1.83 8.66 37.16 0.32 -1.50 16 18 C -0.06 -0.87 4.19 -27.88 -0.12 -0.98 16 19 C -0.07 -0.85 4.71 -104.62 -0.49 -1.34 16 20 C -0.12 -1.31 9.70 -39.58 -0.38 -1.69 16 21 C -0.12 -1.18 10.05 -39.58 -0.40 -1.57 16 22 C -0.13 -1.22 10.05 -39.59 -0.40 -1.62 16 23 C -0.12 -1.17 10.05 -39.59 -0.40 -1.57 16 24 C -0.12 -1.25 7.96 -39.59 -0.32 -1.56 16 25 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 26 H 0.09 2.46 6.07 -51.93 -0.32 2.14 16 27 H 0.03 0.62 8.14 -51.92 -0.42 0.20 16 28 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 29 H 0.39 7.08 7.95 -40.82 -0.32 6.75 16 30 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.06 0.71 6.26 -51.93 -0.33 0.38 16 32 H 0.06 0.77 7.56 -51.93 -0.39 0.38 16 33 H 0.08 1.13 8.09 -51.93 -0.42 0.71 16 34 H 0.08 1.19 7.89 -51.93 -0.41 0.78 16 35 H 0.12 1.24 8.06 -52.49 -0.42 0.82 16 36 H 0.12 0.92 8.06 -52.49 -0.42 0.49 16 37 H 0.12 0.84 8.06 -52.49 -0.42 0.41 16 38 H 0.12 0.90 8.06 -52.48 -0.42 0.47 16 39 H 0.12 1.20 8.04 -52.49 -0.42 0.78 16 LS Contribution 324.06 15.07 4.88 4.88 Total: -1.00 -30.69 324.06 -8.36 -39.05 By element: Atomic # 1 Polarization: 12.37 SS G_CDS: -5.93 Total: 6.44 kcal Atomic # 6 Polarization: -10.54 SS G_CDS: -2.74 Total: -13.27 kcal Atomic # 7 Polarization: -39.91 SS G_CDS: 0.35 Total: -39.56 kcal Atomic # 8 Polarization: -13.31 SS G_CDS: 0.09 Total: -13.22 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -30.69 -8.36 -39.05 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171821511.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.650 kcal (2) G-P(sol) polarization free energy of solvation -30.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.047 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds