Wall clock time and date at job start Mon Mar 30 2020 06:19:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08990 * 109.47173 * 2 1 4 4 C 1.50705 * 109.47260 * 239.99668 * 2 1 3 5 5 H 1.07991 * 119.99976 * 240.00314 * 4 2 1 6 6 C 1.37885 * 119.99592 * 60.00206 * 4 2 1 7 7 N 1.31512 * 119.99797 * 359.97438 * 6 4 2 8 8 Si 1.86793 * 119.99577 * 179.97438 * 6 4 2 9 9 H 1.48508 * 109.47084 * 90.00586 * 8 6 4 10 10 H 1.48501 * 109.46906 * 209.99925 * 8 6 4 11 11 H 1.48496 * 109.47712 * 330.00110 * 8 6 4 12 12 N 1.46499 * 109.46843 * 120.00201 * 2 1 3 13 13 C 1.34784 * 119.99893 * 274.99901 * 12 2 1 14 14 O 1.21283 * 119.99649 * 0.02562 * 13 12 2 15 15 C 1.50697 * 119.99774 * 179.72962 * 13 12 2 16 16 H 1.09001 * 109.46809 * 299.99238 * 15 13 12 17 17 C 1.52998 * 109.47737 * 59.99989 * 15 13 12 18 18 C 1.53003 * 109.46624 * 180.02562 * 15 13 12 19 19 C 1.50703 * 109.46714 * 174.99855 * 18 15 13 20 20 C 1.38239 * 119.99926 * 269.72293 * 19 18 15 21 21 C 1.38235 * 119.99599 * 179.77206 * 20 19 18 22 22 C 1.38232 * 120.00390 * 0.50348 * 21 20 19 23 23 C 1.38233 * 119.99622 * 359.74941 * 22 21 20 24 24 C 1.38232 * 120.00252 * 359.97438 * 23 22 21 25 25 H 1.08997 * 109.47450 * 300.00199 * 1 2 3 26 26 H 1.08998 * 109.47317 * 60.00174 * 1 2 3 27 27 H 1.09007 * 109.47248 * 179.97438 * 1 2 3 28 28 H 0.97008 * 119.99478 * 179.97438 * 7 6 4 29 29 H 0.97005 * 120.00261 * 95.00113 * 12 2 1 30 30 H 1.08998 * 109.46893 * 59.99480 * 17 15 13 31 31 H 1.08994 * 109.47310 * 179.97438 * 17 15 13 32 32 H 1.09006 * 109.46641 * 299.99898 * 17 15 13 33 33 H 1.08999 * 109.47096 * 294.99050 * 18 15 13 34 34 H 1.08993 * 109.47325 * 54.99830 * 18 15 13 35 35 H 1.07999 * 119.99947 * 359.97438 * 20 19 18 36 36 H 1.08002 * 119.99553 * 180.22943 * 21 20 19 37 37 H 1.07997 * 120.00126 * 179.73019 * 22 21 20 38 38 H 1.08007 * 119.99420 * 179.97438 * 23 22 21 39 39 H 1.08000 * 119.99969 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6532 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4828 7 7 0.9428 0.8296 -2.6034 8 14 2.3225 -1.1196 -4.0079 9 1 1.3448 -2.1616 -4.4124 10 1 2.4873 -0.1403 -5.1120 11 1 3.6308 -1.7567 -3.7119 12 7 2.0182 -0.6907 1.1962 13 6 2.1469 -0.0183 2.3572 14 8 1.8581 1.1584 2.4117 15 6 2.6434 -0.7302 3.5891 16 1 1.9668 -1.5493 3.8328 17 6 4.0443 -1.2866 3.3270 18 6 2.6955 0.2531 4.7602 19 6 3.0736 -0.4844 6.0188 20 6 2.0896 -1.0254 6.8250 21 6 2.4367 -1.7060 7.9771 22 6 3.7672 -1.8365 8.3285 23 6 4.7509 -1.2909 7.5250 24 6 4.4042 -0.6153 6.3700 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 0.7088 1.1612 -3.4845 29 1 2.2490 -1.6319 1.1526 30 1 4.7208 -0.4675 3.0833 31 1 4.4035 -1.8011 4.2182 32 1 4.0067 -1.9873 2.4928 33 1 3.4376 1.0244 4.5542 34 1 1.7171 0.7156 4.8900 35 1 1.0498 -0.9192 6.5530 36 1 1.6681 -2.1319 8.6050 37 1 4.0381 -2.3644 9.2308 38 1 5.7905 -1.3926 7.7998 39 1 5.1727 -0.1888 5.7425 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171821511.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:23 Heat of formation + Delta-G solvation = -54.024879 kcal Electronic energy + Delta-G solvation = -19061.357126 eV Core-core repulsion = 16160.078282 eV Total energy + Delta-G solvation = -2901.278844 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.00843 -39.93650 -36.84752 -35.80866 -34.30897 -32.04409 -31.70810 -30.41325 -27.62872 -27.35347 -25.00160 -23.35190 -22.77333 -21.63963 -20.76267 -18.86414 -17.78463 -17.26705 -17.15263 -16.45430 -16.17105 -15.85684 -15.66242 -15.01278 -14.62024 -14.47635 -14.17709 -13.94533 -13.71745 -13.56086 -13.25462 -13.01148 -12.99475 -12.84138 -12.70449 -12.30028 -12.17918 -12.15162 -12.03863 -11.80681 -11.71660 -11.10675 -10.66603 -10.52343 -9.74680 -9.73075 -9.54047 -8.17924 -6.35682 0.49423 0.56304 1.44627 1.45474 1.56161 1.84002 2.35545 2.62686 2.96127 3.12386 3.76073 3.89604 3.96051 4.17344 4.20059 4.24747 4.37755 4.47947 4.60715 4.71356 4.74805 4.84597 4.89876 4.91362 4.95133 5.09090 5.13925 5.22955 5.25930 5.29844 5.43620 5.61597 5.64609 5.68865 5.68998 5.80707 5.90735 6.09787 6.18807 6.72584 6.98051 7.32189 7.57374 8.88445 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.042013 B = 0.003729 C = 0.003586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 666.302197 B = 7506.187235 C = 7806.598399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.269 3.731 3 H -0.003 1.003 4 C -0.547 4.547 5 H 0.074 0.926 6 C 0.013 3.987 7 N -0.919 5.919 8 Si 0.974 3.026 9 H -0.271 1.271 10 H -0.287 1.287 11 H -0.263 1.263 12 N -0.704 5.704 13 C 0.500 3.500 14 O -0.602 6.602 15 C -0.091 4.091 16 H 0.111 0.889 17 C -0.139 4.139 18 C -0.056 4.056 19 C -0.085 4.085 20 C -0.131 4.131 21 C -0.124 4.124 22 C -0.130 4.130 23 C -0.124 4.124 24 C -0.124 4.124 25 H 0.011 0.989 26 H 0.066 0.934 27 H 0.040 0.960 28 H 0.265 0.735 29 H 0.404 0.596 30 H 0.051 0.949 31 H 0.087 0.913 32 H 0.067 0.933 33 H 0.065 0.935 34 H 0.063 0.937 35 H 0.123 0.877 36 H 0.139 0.861 37 H 0.143 0.857 38 H 0.141 0.859 39 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.434 -8.990 18.948 21.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.166 3.834 3 H 0.015 0.985 4 C -0.585 4.585 5 H 0.092 0.908 6 C -0.187 4.187 7 N -0.557 5.557 8 Si 0.798 3.202 9 H -0.196 1.196 10 H -0.213 1.213 11 H -0.187 1.187 12 N -0.353 5.353 13 C 0.287 3.713 14 O -0.485 6.485 15 C -0.112 4.112 16 H 0.129 0.871 17 C -0.196 4.196 18 C -0.094 4.094 19 C -0.085 4.085 20 C -0.149 4.149 21 C -0.142 4.142 22 C -0.148 4.148 23 C -0.142 4.142 24 C -0.142 4.142 25 H 0.030 0.970 26 H 0.085 0.915 27 H 0.059 0.941 28 H 0.074 0.926 29 H 0.239 0.761 30 H 0.070 0.930 31 H 0.106 0.894 32 H 0.086 0.914 33 H 0.084 0.916 34 H 0.082 0.918 35 H 0.141 0.859 36 H 0.157 0.843 37 H 0.161 0.839 38 H 0.159 0.841 39 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 6.146 -8.049 18.819 21.371 hybrid contribution -0.042 -0.152 -1.175 1.186 sum 6.104 -8.201 17.644 20.392 Atomic orbital electron populations 1.21901 0.98419 0.99430 0.99512 1.18332 0.91059 0.91893 0.82152 0.98548 1.21556 1.32589 1.13543 0.90809 0.90824 1.25829 0.94882 0.95573 1.02407 1.70062 1.37051 1.23972 1.24603 0.85322 0.79017 0.78011 0.77850 1.19606 1.21255 1.18723 1.46294 1.65031 1.14164 1.09768 1.21378 0.77064 0.87040 0.85787 1.90622 1.53234 1.18541 1.86058 1.21231 1.00259 0.98862 0.90896 0.87103 1.21821 0.93332 1.01125 1.03326 1.20281 1.02257 0.96226 0.90612 1.19828 0.94211 0.98716 0.95755 1.21259 0.99393 0.98732 0.95516 1.21413 0.97307 0.98787 0.96698 1.21475 0.92841 0.99991 1.00478 1.21437 1.00641 0.97641 0.94435 1.21254 0.95422 0.99853 0.97705 0.97014 0.91508 0.94071 0.92556 0.76084 0.92969 0.89438 0.91403 0.91608 0.91838 0.85902 0.84274 0.83936 0.84069 0.85501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.93 9.26 71.98 0.67 -6.26 16 2 C 0.27 14.22 2.56 44.25 0.11 14.34 16 3 H 0.00 -0.21 7.58 -2.39 -0.02 -0.23 16 4 C -0.55 -29.21 8.73 25.60 0.22 -28.99 16 5 H 0.07 3.66 7.74 -2.92 -0.02 3.63 16 6 C 0.01 0.70 5.30 84.66 0.45 1.15 16 7 N -0.92 -53.26 11.32 21.45 0.24 -53.02 16 8 Si 0.97 42.13 29.54 68.60 2.03 44.15 16 9 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 10 H -0.29 -12.40 7.11 99.48 0.71 -11.70 16 11 H -0.26 -10.85 7.11 99.48 0.71 -10.14 16 12 N -0.70 -29.65 4.96 -446.10 -2.21 -31.87 16 13 C 0.50 20.22 7.12 87.65 0.62 20.84 16 14 O -0.60 -30.10 15.58 -3.04 -0.05 -30.15 16 15 C -0.09 -2.58 2.71 -11.54 -0.03 -2.61 16 16 H 0.11 2.73 8.14 -2.39 -0.02 2.71 16 17 C -0.14 -3.27 8.66 71.98 0.62 -2.64 16 18 C -0.06 -1.55 4.19 29.85 0.13 -1.42 16 19 C -0.09 -1.93 4.71 -19.86 -0.09 -2.02 16 20 C -0.13 -2.71 9.70 22.27 0.22 -2.49 16 21 C -0.12 -2.10 10.05 22.27 0.22 -1.88 16 22 C -0.13 -1.99 10.05 22.27 0.22 -1.77 16 23 C -0.12 -2.02 10.05 22.27 0.22 -1.79 16 24 C -0.12 -2.46 7.96 22.27 0.18 -2.28 16 25 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 26 H 0.07 3.77 6.07 -2.39 -0.01 3.76 16 27 H 0.04 1.95 8.14 -2.38 -0.02 1.93 16 28 H 0.27 14.53 8.31 -92.70 -0.77 13.76 16 29 H 0.40 14.31 7.95 -92.70 -0.74 13.57 16 30 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 31 H 0.09 1.70 6.26 -2.39 -0.01 1.68 16 32 H 0.07 1.53 7.56 -2.38 -0.02 1.51 16 33 H 0.07 1.95 8.09 -2.39 -0.02 1.93 16 34 H 0.06 1.94 7.89 -2.39 -0.02 1.93 16 35 H 0.12 2.41 8.06 -2.91 -0.02 2.38 16 36 H 0.14 1.72 8.06 -2.91 -0.02 1.70 16 37 H 0.14 1.44 8.06 -2.91 -0.02 1.41 16 38 H 0.14 1.62 8.06 -2.91 -0.02 1.60 16 39 H 0.13 2.30 8.04 -2.91 -0.02 2.28 16 Total: -1.00 -67.80 324.06 4.06 -63.74 By element: Atomic # 1 Polarization: 24.68 SS G_CDS: 0.29 Total: 24.98 kcal Atomic # 6 Polarization: -21.60 SS G_CDS: 3.76 Total: -17.83 kcal Atomic # 7 Polarization: -82.91 SS G_CDS: -1.97 Total: -84.89 kcal Atomic # 8 Polarization: -30.10 SS G_CDS: -0.05 Total: -30.15 kcal Atomic # 14 Polarization: 42.13 SS G_CDS: 2.03 Total: 44.15 kcal Total: -67.80 4.06 -63.74 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171821511.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.716 kcal (2) G-P(sol) polarization free energy of solvation -67.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds