Wall clock time and date at job start Mon Mar 30 2020 06:19:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08994 * 109.47441 * 2 1 4 4 C 1.53004 * 109.47204 * 239.99255 * 2 1 3 5 5 C 1.50706 * 109.46503 * 65.00250 * 4 2 1 6 6 C 1.38238 * 119.99727 * 90.00317 * 5 4 2 7 7 C 1.38234 * 119.99693 * 180.02562 * 6 5 4 8 8 C 1.38234 * 120.00240 * 359.97438 * 7 6 5 9 9 C 1.38233 * 120.00037 * 0.26327 * 8 7 6 10 10 C 1.38234 * 120.00207 * 270.01808 * 5 4 2 11 11 C 1.50706 * 109.46935 * 120.00078 * 2 1 3 12 12 O 1.21272 * 120.00178 * 119.99922 * 11 2 1 13 13 N 1.34776 * 119.99507 * 299.99480 * 11 2 1 14 14 C 1.46506 * 119.99812 * 179.97438 * 13 11 2 15 15 H 1.09007 * 109.47202 * 325.00315 * 14 13 11 16 16 C 1.52999 * 109.46894 * 85.00176 * 14 13 11 17 17 C 1.50698 * 109.47342 * 205.00045 * 14 13 11 18 18 H 1.08001 * 119.99841 * 0.02562 * 17 14 13 19 19 C 1.37876 * 120.00148 * 179.97438 * 17 14 13 20 20 N 1.31512 * 119.99690 * 0.02562 * 19 17 14 21 21 Si 1.86801 * 120.00069 * 180.02562 * 19 17 14 22 22 H 1.48495 * 109.47111 * 90.00126 * 21 19 17 23 23 H 1.48500 * 109.47012 * 210.00221 * 21 19 17 24 24 H 1.48505 * 109.47039 * 330.00149 * 21 19 17 25 25 H 1.09007 * 109.47021 * 59.99860 * 1 2 3 26 26 H 1.09002 * 109.47774 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47481 * 300.00679 * 1 2 3 28 28 H 1.09000 * 109.47324 * 305.00840 * 4 2 1 29 29 H 1.08993 * 109.47443 * 185.00044 * 4 2 1 30 30 H 1.07997 * 119.99846 * 359.97438 * 6 5 4 31 31 H 1.07999 * 119.99751 * 179.97438 * 7 6 5 32 32 H 1.08002 * 119.99744 * 179.97438 * 8 7 6 33 33 H 1.07998 * 120.00395 * 179.72811 * 9 8 7 34 34 H 1.07999 * 120.00008 * 0.02562 * 10 5 4 35 35 H 0.97000 * 120.00246 * 0.02562 * 13 11 2 36 36 H 1.08999 * 109.47256 * 59.99781 * 16 14 13 37 37 H 1.08997 * 109.47046 * 179.97438 * 16 14 13 38 38 H 1.08999 * 109.47197 * 300.00298 * 16 14 13 39 39 H 0.97007 * 119.99686 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2492 5 6 1.6413 0.0569 -2.4766 6 6 2.4815 1.0328 -2.9793 7 6 2.1155 1.7470 -4.1048 8 6 0.9097 1.4851 -4.7279 9 6 0.0673 0.5126 -4.2223 10 6 0.4353 -0.2048 -3.0995 11 6 2.0322 -0.7105 1.2305 12 8 2.7294 -1.6965 1.1193 13 7 1.7067 -0.2499 2.4546 14 6 2.1945 -0.9408 3.6508 15 1 2.2307 -2.0137 3.4614 16 6 3.5972 -0.4360 3.9949 17 6 1.2646 -0.6655 4.8043 18 1 0.3968 -0.0388 4.6606 19 6 1.5211 -1.2143 6.0428 20 7 2.5776 -1.9778 6.2176 21 14 0.3681 -0.8736 7.4724 22 1 -0.6949 -1.9099 7.5089 23 1 1.1339 -0.9050 8.7443 24 1 -0.2514 0.4651 7.3005 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3635 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 1.6053 -1.7199 -1.2951 29 1 3.1262 -0.7997 -1.2055 30 1 3.4233 1.2377 -2.4922 31 1 2.7717 2.5097 -4.4973 32 1 0.6237 2.0435 -5.6070 33 1 -0.8767 0.3110 -4.7065 34 1 -0.2214 -0.9668 -2.7064 35 1 1.1487 0.5386 2.5435 36 1 3.5610 0.6368 4.1843 37 1 3.9600 -0.9497 4.8852 38 1 4.2698 -0.6351 3.1606 39 1 2.7583 -2.3637 7.0891 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171821512.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:25 Heat of formation + Delta-G solvation = -36.388296 kcal Electronic energy + Delta-G solvation = -19061.312224 eV Core-core repulsion = 16160.798159 eV Total energy + Delta-G solvation = -2900.514065 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.74255 -38.73958 -35.12058 -34.41859 -32.39059 -31.04282 -30.80981 -28.62413 -26.62630 -25.25174 -23.65979 -22.55482 -21.40380 -20.22476 -19.13902 -17.20390 -16.74804 -15.76740 -15.36292 -15.30342 -14.97671 -14.52469 -14.38133 -13.51438 -13.41328 -13.27969 -12.87169 -12.61316 -12.38885 -12.27674 -11.92250 -11.64920 -11.22933 -11.11322 -11.02937 -10.95499 -10.90070 -10.75220 -10.68473 -10.28798 -10.22410 -9.04224 -9.02060 -8.92253 -8.67051 -8.52811 -7.86837 -6.11385 -4.20606 1.28902 1.32410 3.24830 3.31366 3.33205 3.45321 3.69357 4.13472 4.38813 4.79526 4.84366 4.93605 5.05787 5.07967 5.18870 5.21264 5.35940 5.45533 5.46810 5.72730 5.83059 5.86489 5.94069 6.01877 6.08557 6.31922 6.33573 6.41051 6.42590 6.65735 6.84305 6.94460 6.98592 7.17303 7.49575 7.58702 7.71360 7.93518 8.16772 8.70830 8.80070 9.17465 9.47298 10.94597 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.041958 B = 0.003731 C = 0.003587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 667.167112 B = 7503.128698 C = 7804.130654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.106 4.106 3 H 0.090 0.910 4 C -0.063 4.063 5 C -0.071 4.071 6 C -0.118 4.118 7 C -0.120 4.120 8 C -0.131 4.131 9 C -0.121 4.121 10 C -0.115 4.115 11 C 0.505 3.495 12 O -0.557 6.557 13 N -0.708 5.708 14 C 0.264 3.736 15 H 0.048 0.952 16 C -0.147 4.147 17 C -0.533 4.533 18 H 0.061 0.939 19 C 0.066 3.934 20 N -0.884 5.884 21 Si 0.901 3.099 22 H -0.280 1.280 23 H -0.285 1.285 24 H -0.274 1.274 25 H 0.064 0.936 26 H 0.060 0.940 27 H 0.061 0.939 28 H 0.078 0.922 29 H 0.080 0.920 30 H 0.122 0.878 31 H 0.119 0.881 32 H 0.117 0.883 33 H 0.119 0.881 34 H 0.122 0.878 35 H 0.388 0.612 36 H 0.026 0.974 37 H 0.090 0.910 38 H 0.014 0.986 39 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.993 7.377 -17.648 19.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.127 4.127 3 H 0.108 0.892 4 C -0.101 4.101 5 C -0.071 4.071 6 C -0.136 4.136 7 C -0.138 4.138 8 C -0.149 4.149 9 C -0.139 4.139 10 C -0.133 4.133 11 C 0.289 3.711 12 O -0.436 6.436 13 N -0.356 5.356 14 C 0.162 3.838 15 H 0.066 0.934 16 C -0.205 4.205 17 C -0.572 4.572 18 H 0.079 0.921 19 C -0.137 4.137 20 N -0.521 5.521 21 Si 0.729 3.271 22 H -0.206 1.206 23 H -0.211 1.211 24 H -0.198 1.198 25 H 0.082 0.918 26 H 0.079 0.921 27 H 0.080 0.920 28 H 0.097 0.903 29 H 0.099 0.901 30 H 0.140 0.860 31 H 0.137 0.863 32 H 0.135 0.865 33 H 0.137 0.863 34 H 0.140 0.860 35 H 0.220 0.780 36 H 0.045 0.955 37 H 0.108 0.892 38 H 0.033 0.967 39 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -3.387 6.549 -17.528 19.016 hybrid contribution -0.850 0.632 0.879 1.376 sum -4.237 7.182 -16.650 18.621 Atomic orbital electron populations 1.21837 0.93342 1.02645 1.02380 1.21270 0.97473 1.00572 0.93417 0.89166 1.20423 1.02238 0.98062 0.89341 1.20015 0.94328 0.96313 0.96488 1.21122 0.99824 0.96105 0.96540 1.21128 0.96834 0.99727 0.96130 1.21101 0.94910 0.98635 1.00214 1.21134 0.99574 0.96566 0.96644 1.21128 0.96338 1.00059 0.95821 1.20389 0.80860 0.84904 0.84924 1.90642 1.39106 1.26928 1.86947 1.46525 1.51498 1.31070 1.06473 1.18728 0.91508 0.93344 0.80244 0.93442 1.22073 0.97973 0.99251 1.01241 1.21229 1.09747 1.31951 0.94232 0.92118 1.24893 0.95436 0.94727 0.98692 1.69909 1.26242 1.32063 1.23916 0.86453 0.80550 0.78666 0.81455 1.20563 1.21077 1.19849 0.91750 0.92137 0.91966 0.90293 0.90095 0.86030 0.86310 0.86474 0.86309 0.85976 0.77975 0.95530 0.89188 0.96687 0.92599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.83 8.66 37.15 0.32 -1.50 16 2 C -0.11 -1.53 2.71 -91.77 -0.25 -1.78 16 3 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 4 C -0.06 -0.86 4.19 -27.88 -0.12 -0.98 16 5 C -0.07 -0.85 4.71 -104.62 -0.49 -1.34 16 6 C -0.12 -1.31 9.70 -39.58 -0.38 -1.69 16 7 C -0.12 -1.18 10.05 -39.58 -0.40 -1.57 16 8 C -0.13 -1.22 10.05 -39.58 -0.40 -1.62 16 9 C -0.12 -1.17 10.05 -39.58 -0.40 -1.57 16 10 C -0.12 -1.25 7.96 -39.58 -0.32 -1.56 16 11 C 0.50 10.03 7.12 -10.98 -0.08 9.95 16 12 O -0.56 -13.31 15.58 5.56 0.09 -13.22 16 13 N -0.71 -14.84 4.96 -54.93 -0.27 -15.11 16 14 C 0.26 6.78 2.56 -69.08 -0.18 6.60 16 15 H 0.05 1.41 7.58 -51.93 -0.39 1.02 16 16 C -0.15 -3.70 9.26 37.16 0.34 -3.36 16 17 C -0.53 -14.22 8.73 -34.44 -0.30 -14.52 16 18 H 0.06 1.54 7.74 -52.49 -0.41 1.14 16 19 C 0.07 1.78 5.30 -17.82 -0.09 1.68 16 20 N -0.88 -25.08 11.32 55.43 0.63 -24.45 16 21 Si 0.90 20.71 29.54 -169.99 -5.02 15.69 16 22 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 23 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 24 H -0.27 -6.14 7.11 56.52 0.40 -5.73 16 25 H 0.06 0.71 6.27 -51.92 -0.33 0.38 16 26 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 27 H 0.06 0.77 7.56 -51.93 -0.39 0.38 16 28 H 0.08 1.13 8.09 -51.93 -0.42 0.71 16 29 H 0.08 1.19 7.90 -51.93 -0.41 0.78 16 30 H 0.12 1.24 8.06 -52.49 -0.42 0.81 16 31 H 0.12 0.92 8.06 -52.49 -0.42 0.49 16 32 H 0.12 0.84 8.06 -52.49 -0.42 0.41 16 33 H 0.12 0.90 8.06 -52.49 -0.42 0.47 16 34 H 0.12 1.20 8.04 -52.49 -0.42 0.78 16 35 H 0.39 7.08 7.96 -40.82 -0.32 6.76 16 36 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.09 2.46 6.07 -51.93 -0.32 2.14 16 38 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 39 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 LS Contribution 324.07 15.07 4.88 4.88 Total: -1.00 -30.68 324.07 -8.36 -39.04 By element: Atomic # 1 Polarization: 12.37 SS G_CDS: -5.93 Total: 6.44 kcal Atomic # 6 Polarization: -10.53 SS G_CDS: -2.74 Total: -13.27 kcal Atomic # 7 Polarization: -39.91 SS G_CDS: 0.35 Total: -39.56 kcal Atomic # 8 Polarization: -13.31 SS G_CDS: 0.09 Total: -13.22 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -30.68 -8.36 -39.04 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171821512.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.649 kcal (2) G-P(sol) polarization free energy of solvation -30.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.038 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds