Wall clock time and date at job start Mon Mar 30 2020 06:19:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08994 * 109.47441 * 2 1 4 4 C 1.53004 * 109.47204 * 239.99255 * 2 1 3 5 5 C 1.50706 * 109.46503 * 65.00250 * 4 2 1 6 6 C 1.38238 * 119.99727 * 90.00317 * 5 4 2 7 7 C 1.38234 * 119.99693 * 180.02562 * 6 5 4 8 8 C 1.38234 * 120.00240 * 359.97438 * 7 6 5 9 9 C 1.38233 * 120.00037 * 0.26327 * 8 7 6 10 10 C 1.38234 * 120.00207 * 270.01808 * 5 4 2 11 11 C 1.50706 * 109.46935 * 120.00078 * 2 1 3 12 12 O 1.21272 * 120.00178 * 119.99922 * 11 2 1 13 13 N 1.34776 * 119.99507 * 299.99480 * 11 2 1 14 14 C 1.46506 * 119.99812 * 179.97438 * 13 11 2 15 15 H 1.09007 * 109.47202 * 325.00315 * 14 13 11 16 16 C 1.52999 * 109.46894 * 85.00176 * 14 13 11 17 17 C 1.50698 * 109.47342 * 205.00045 * 14 13 11 18 18 H 1.08001 * 119.99841 * 0.02562 * 17 14 13 19 19 C 1.37876 * 120.00148 * 179.97438 * 17 14 13 20 20 N 1.31512 * 119.99690 * 0.02562 * 19 17 14 21 21 Si 1.86801 * 120.00069 * 180.02562 * 19 17 14 22 22 H 1.48495 * 109.47111 * 90.00126 * 21 19 17 23 23 H 1.48500 * 109.47012 * 210.00221 * 21 19 17 24 24 H 1.48505 * 109.47039 * 330.00149 * 21 19 17 25 25 H 1.09007 * 109.47021 * 59.99860 * 1 2 3 26 26 H 1.09002 * 109.47774 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47481 * 300.00679 * 1 2 3 28 28 H 1.09000 * 109.47324 * 305.00840 * 4 2 1 29 29 H 1.08993 * 109.47443 * 185.00044 * 4 2 1 30 30 H 1.07997 * 119.99846 * 359.97438 * 6 5 4 31 31 H 1.07999 * 119.99751 * 179.97438 * 7 6 5 32 32 H 1.08002 * 119.99744 * 179.97438 * 8 7 6 33 33 H 1.07998 * 120.00395 * 179.72811 * 9 8 7 34 34 H 1.07999 * 120.00008 * 0.02562 * 10 5 4 35 35 H 0.97000 * 120.00246 * 0.02562 * 13 11 2 36 36 H 1.08999 * 109.47256 * 59.99781 * 16 14 13 37 37 H 1.08997 * 109.47046 * 179.97438 * 16 14 13 38 38 H 1.08999 * 109.47197 * 300.00298 * 16 14 13 39 39 H 0.97007 * 119.99686 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2492 5 6 1.6413 0.0569 -2.4766 6 6 2.4815 1.0328 -2.9793 7 6 2.1155 1.7470 -4.1048 8 6 0.9097 1.4851 -4.7279 9 6 0.0673 0.5126 -4.2223 10 6 0.4353 -0.2048 -3.0995 11 6 2.0322 -0.7105 1.2305 12 8 2.7294 -1.6965 1.1193 13 7 1.7067 -0.2499 2.4546 14 6 2.1945 -0.9408 3.6508 15 1 2.2307 -2.0137 3.4614 16 6 3.5972 -0.4360 3.9949 17 6 1.2646 -0.6655 4.8043 18 1 0.3968 -0.0388 4.6606 19 6 1.5211 -1.2143 6.0428 20 7 2.5776 -1.9778 6.2176 21 14 0.3681 -0.8736 7.4724 22 1 -0.6949 -1.9099 7.5089 23 1 1.1339 -0.9050 8.7443 24 1 -0.2514 0.4651 7.3005 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3635 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 1.6053 -1.7199 -1.2951 29 1 3.1262 -0.7997 -1.2055 30 1 3.4233 1.2377 -2.4922 31 1 2.7717 2.5097 -4.4973 32 1 0.6237 2.0435 -5.6070 33 1 -0.8767 0.3110 -4.7065 34 1 -0.2214 -0.9668 -2.7064 35 1 1.1487 0.5386 2.5435 36 1 3.5610 0.6368 4.1843 37 1 3.9600 -0.9497 4.8852 38 1 4.2698 -0.6351 3.1606 39 1 2.7583 -2.3637 7.0891 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171821512.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:24 Heat of formation + Delta-G solvation = -54.009645 kcal Electronic energy + Delta-G solvation = -19062.076343 eV Core-core repulsion = 16160.798159 eV Total energy + Delta-G solvation = -2901.278184 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.00995 -39.93659 -36.84755 -35.80868 -34.30918 -32.04292 -31.70810 -30.41332 -27.62840 -27.35357 -25.00141 -23.35225 -22.77288 -21.63945 -20.76311 -18.86349 -17.78516 -17.26620 -17.15286 -16.45431 -16.16927 -15.85704 -15.66331 -15.01178 -14.62264 -14.47440 -14.17708 -13.94441 -13.71708 -13.56030 -13.25560 -13.01039 -12.96673 -12.87128 -12.72946 -12.28019 -12.17495 -12.14257 -12.03781 -11.80650 -11.71660 -11.11619 -10.66373 -10.52196 -9.74673 -9.73147 -9.54021 -8.17904 -6.35675 0.49436 0.56304 1.44794 1.45335 1.56216 1.84048 2.35545 2.62725 2.96131 3.12464 3.76077 3.89622 3.96107 4.17400 4.20089 4.24716 4.37765 4.47970 4.60697 4.71341 4.74831 4.84645 4.89842 4.91445 4.95099 5.09128 5.13937 5.22939 5.25967 5.29815 5.43599 5.61601 5.64605 5.68872 5.69050 5.80719 5.90692 6.09803 6.18819 6.72592 6.98104 7.32225 7.57412 8.88495 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.041958 B = 0.003731 C = 0.003587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 667.167112 B = 7503.128698 C = 7804.130654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.091 4.091 3 H 0.111 0.889 4 C -0.056 4.056 5 C -0.085 4.085 6 C -0.131 4.131 7 C -0.124 4.124 8 C -0.130 4.130 9 C -0.124 4.124 10 C -0.124 4.124 11 C 0.500 3.500 12 O -0.602 6.602 13 N -0.704 5.704 14 C 0.269 3.731 15 H -0.004 1.004 16 C -0.134 4.134 17 C -0.547 4.547 18 H 0.074 0.926 19 C 0.013 3.987 20 N -0.919 5.919 21 Si 0.973 3.027 22 H -0.278 1.278 23 H -0.284 1.284 24 H -0.259 1.259 25 H 0.087 0.913 26 H 0.051 0.949 27 H 0.067 0.933 28 H 0.065 0.935 29 H 0.063 0.937 30 H 0.123 0.877 31 H 0.139 0.861 32 H 0.143 0.857 33 H 0.141 0.859 34 H 0.127 0.873 35 H 0.404 0.596 36 H 0.040 0.960 37 H 0.066 0.934 38 H 0.011 0.989 39 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.872 9.570 -18.854 21.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.113 4.113 3 H 0.129 0.871 4 C -0.094 4.094 5 C -0.085 4.085 6 C -0.149 4.149 7 C -0.142 4.142 8 C -0.148 4.148 9 C -0.142 4.142 10 C -0.142 4.142 11 C 0.287 3.713 12 O -0.485 6.485 13 N -0.353 5.353 14 C 0.166 3.834 15 H 0.014 0.986 16 C -0.193 4.193 17 C -0.585 4.585 18 H 0.092 0.908 19 C -0.187 4.187 20 N -0.557 5.557 21 Si 0.798 3.202 22 H -0.203 1.203 23 H -0.210 1.210 24 H -0.183 1.183 25 H 0.106 0.894 26 H 0.070 0.930 27 H 0.086 0.914 28 H 0.084 0.916 29 H 0.082 0.918 30 H 0.141 0.859 31 H 0.157 0.843 32 H 0.161 0.839 33 H 0.159 0.841 34 H 0.145 0.855 35 H 0.239 0.761 36 H 0.059 0.941 37 H 0.085 0.915 38 H 0.030 0.970 39 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -5.288 8.778 -18.760 21.377 hybrid contribution -0.230 -0.074 1.159 1.184 sum -5.519 8.703 -17.601 20.396 Atomic orbital electron populations 1.21822 0.91417 1.02587 1.03776 1.21231 0.98828 1.00664 0.90527 0.87101 1.20281 1.00995 0.97825 0.90272 1.19829 0.95414 0.97056 0.96215 1.21258 0.99939 0.96349 0.97349 1.21413 0.97458 0.99820 0.95513 1.21476 0.94388 0.98270 1.00653 1.21437 1.00541 0.96109 0.96064 1.21256 0.96049 1.00506 0.96426 1.21374 0.79650 0.84315 0.85929 1.90619 1.41064 1.29134 1.87633 1.46293 1.51834 1.31393 1.05735 1.18334 0.92073 0.91010 0.82021 0.98568 1.21898 0.97703 0.99686 0.99968 1.21556 1.10215 1.32141 0.94572 0.90811 1.25827 0.96940 0.94330 1.01594 1.70061 1.28041 1.32991 1.24604 0.85326 0.78225 0.79038 0.77638 1.20332 1.20967 1.18271 0.89443 0.92973 0.91398 0.91612 0.91840 0.85897 0.84272 0.83936 0.84071 0.85505 0.76084 0.94055 0.91512 0.97017 0.92556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.27 8.66 71.98 0.62 -2.65 16 2 C -0.09 -2.58 2.71 -11.54 -0.03 -2.61 16 3 H 0.11 2.73 8.14 -2.39 -0.02 2.71 16 4 C -0.06 -1.55 4.19 29.85 0.13 -1.42 16 5 C -0.09 -1.93 4.71 -19.86 -0.09 -2.02 16 6 C -0.13 -2.71 9.70 22.27 0.22 -2.49 16 7 C -0.12 -2.10 10.05 22.27 0.22 -1.88 16 8 C -0.13 -1.99 10.05 22.27 0.22 -1.77 16 9 C -0.12 -2.02 10.05 22.27 0.22 -1.79 16 10 C -0.12 -2.46 7.96 22.27 0.18 -2.28 16 11 C 0.50 20.21 7.12 87.66 0.62 20.84 16 12 O -0.60 -30.10 15.58 -3.01 -0.05 -30.15 16 13 N -0.70 -29.64 4.96 -446.08 -2.21 -31.86 16 14 C 0.27 14.22 2.56 44.24 0.11 14.33 16 15 H 0.00 -0.22 7.58 -2.38 -0.02 -0.24 16 16 C -0.13 -6.92 9.26 71.98 0.67 -6.25 16 17 C -0.55 -29.19 8.73 25.60 0.22 -28.97 16 18 H 0.07 3.66 7.74 -2.91 -0.02 3.64 16 19 C 0.01 0.70 5.30 84.65 0.45 1.15 16 20 N -0.92 -53.27 11.32 21.45 0.24 -53.03 16 21 Si 0.97 42.11 29.54 68.60 2.03 44.14 16 22 H -0.28 -11.85 7.11 99.48 0.71 -11.15 16 23 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 24 H -0.26 -10.51 7.11 99.48 0.71 -9.80 16 25 H 0.09 1.70 6.27 -2.38 -0.01 1.68 16 26 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 27 H 0.07 1.53 7.56 -2.38 -0.02 1.51 16 28 H 0.07 1.95 8.09 -2.39 -0.02 1.93 16 29 H 0.06 1.94 7.90 -2.39 -0.02 1.92 16 30 H 0.12 2.40 8.06 -2.91 -0.02 2.38 16 31 H 0.14 1.72 8.06 -2.91 -0.02 1.70 16 32 H 0.14 1.44 8.06 -2.91 -0.02 1.41 16 33 H 0.14 1.62 8.06 -2.91 -0.02 1.60 16 34 H 0.13 2.30 8.04 -2.91 -0.02 2.28 16 35 H 0.40 14.31 7.96 -92.71 -0.74 13.57 16 36 H 0.04 1.95 8.14 -2.39 -0.02 1.93 16 37 H 0.07 3.77 6.07 -2.39 -0.01 3.75 16 38 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 39 H 0.27 14.53 8.31 -92.70 -0.77 13.76 16 Total: -1.00 -67.80 324.07 4.06 -63.74 By element: Atomic # 1 Polarization: 24.68 SS G_CDS: 0.29 Total: 24.97 kcal Atomic # 6 Polarization: -21.58 SS G_CDS: 3.76 Total: -17.82 kcal Atomic # 7 Polarization: -82.91 SS G_CDS: -1.97 Total: -84.88 kcal Atomic # 8 Polarization: -30.10 SS G_CDS: -0.05 Total: -30.15 kcal Atomic # 14 Polarization: 42.11 SS G_CDS: 2.03 Total: 44.14 kcal Total: -67.80 4.06 -63.74 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171821512.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.728 kcal (2) G-P(sol) polarization free energy of solvation -67.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.738 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds