Wall clock time and date at job start Mon Mar 30 2020 06:19:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.50708 * 109.47141 * 239.99699 * 2 1 3 5 5 H 1.07995 * 119.99755 * 240.00383 * 4 2 1 6 6 C 1.37873 * 119.99729 * 60.00006 * 4 2 1 7 7 N 1.31516 * 119.99909 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99980 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46921 * 60.00420 * 8 6 4 10 10 H 1.48496 * 109.46933 * 180.02562 * 8 6 4 11 11 H 1.48498 * 109.46946 * 300.00103 * 8 6 4 12 12 N 1.46506 * 109.47289 * 119.99984 * 2 1 3 13 13 C 1.34775 * 119.99693 * 275.00198 * 12 2 1 14 14 O 1.21274 * 120.00425 * 359.97438 * 13 12 2 15 15 C 1.50706 * 119.99541 * 179.97438 * 13 12 2 16 16 H 1.08999 * 109.46969 * 59.99809 * 15 13 12 17 17 C 1.52995 * 109.46956 * 299.99469 * 15 13 12 18 18 C 1.53000 * 109.46655 * 179.97438 * 15 13 12 19 19 C 1.50705 * 109.46750 * 184.99759 * 18 15 13 20 20 C 1.38237 * 119.99983 * 269.72619 * 19 18 15 21 21 C 1.38238 * 119.99652 * 179.76788 * 20 19 18 22 22 C 1.38238 * 120.00086 * 0.50842 * 21 20 19 23 23 C 1.38235 * 119.99757 * 359.74483 * 22 21 20 24 24 C 1.38231 * 120.00337 * 0.02562 * 23 22 21 25 25 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 26 26 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 27 27 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 28 28 H 0.97002 * 119.99804 * 180.02562 * 7 6 4 29 29 H 0.97000 * 120.00117 * 94.99845 * 12 2 1 30 30 H 1.09003 * 109.47335 * 60.00558 * 17 15 13 31 31 H 1.09002 * 109.46959 * 180.02562 * 17 15 13 32 32 H 1.08999 * 109.47559 * 299.99979 * 17 15 13 33 33 H 1.08993 * 109.47424 * 304.99447 * 18 15 13 34 34 H 1.08999 * 109.47502 * 64.99971 * 18 15 13 35 35 H 1.07997 * 120.00200 * 359.97438 * 20 19 18 36 36 H 1.08002 * 119.99559 * 180.22814 * 21 20 19 37 37 H 1.07999 * 119.99933 * 179.72357 * 22 21 20 38 38 H 1.08002 * 119.99694 * 179.97438 * 23 22 21 39 39 H 1.07996 * 120.00100 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6532 -1.5886 -1.1313 6 6 1.6992 -0.2395 -2.4827 7 7 0.9435 0.8301 -2.6034 8 14 2.3225 -1.1197 -4.0079 9 1 1.8279 -2.5199 -4.0081 10 1 1.8278 -0.4194 -5.2204 11 1 3.8074 -1.1191 -4.0077 12 7 2.0184 -0.6906 1.1962 13 6 2.1470 -0.0182 2.3571 14 8 1.8590 1.1586 2.4115 15 6 2.6489 -0.7288 3.5878 16 1 3.6480 -1.1214 3.3986 17 6 1.7043 -1.8823 3.9314 18 6 2.7010 0.2545 4.7587 19 6 3.3173 -0.4223 5.9559 20 6 2.5146 -1.0910 6.8612 21 6 3.0805 -1.7159 7.9568 22 6 4.4479 -1.6632 8.1527 23 6 5.2499 -0.9901 7.2502 24 6 4.6847 -0.3692 6.1521 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 0.7089 1.1613 -3.4844 29 1 2.2491 -1.6318 1.1527 30 1 1.6675 -2.5827 3.0971 31 1 2.0670 -2.3959 4.8218 32 1 0.7052 -1.4897 4.1206 33 1 3.3031 1.1194 4.4804 34 1 1.6903 0.5797 5.0055 35 1 1.4458 -1.1280 6.7108 36 1 2.4537 -2.2414 8.6620 37 1 4.8894 -2.1476 9.0110 38 1 6.3182 -0.9486 7.4035 39 1 5.3113 0.1570 5.4473 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171821514.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:27 Heat of formation + Delta-G solvation = -36.354470 kcal Electronic energy + Delta-G solvation = -19062.967164 eV Core-core repulsion = 16162.454567 eV Total energy + Delta-G solvation = -2900.512598 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.74187 -38.73991 -35.11782 -34.42117 -32.39041 -31.03982 -30.81006 -28.63456 -26.63860 -25.24249 -23.64781 -22.55446 -21.40727 -20.25783 -19.11507 -17.18239 -16.75136 -15.81711 -15.37977 -15.24110 -14.99067 -14.48388 -14.40824 -13.59586 -13.40014 -13.26147 -12.82646 -12.62879 -12.38010 -12.26959 -11.96734 -11.63758 -11.24111 -11.10457 -11.01998 -10.94370 -10.92539 -10.79416 -10.63438 -10.31174 -10.22035 -9.04200 -9.02015 -8.92274 -8.67032 -8.52694 -7.86806 -6.11115 -4.20525 1.28953 1.32497 3.26002 3.31215 3.32383 3.45377 3.69409 4.13286 4.39105 4.79530 4.84430 4.93640 5.05542 5.07787 5.18333 5.21298 5.35295 5.45491 5.46677 5.72374 5.82630 5.86136 5.92567 6.01520 6.08141 6.29905 6.33451 6.41020 6.42712 6.65760 6.84456 6.94528 6.98765 7.17391 7.49715 7.58674 7.71399 7.93619 8.16910 8.70823 8.80033 9.17500 9.47362 10.94814 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.040046 B = 0.003712 C = 0.003617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 699.030146 B = 7540.349334 C = 7738.987985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.264 3.736 3 H 0.048 0.952 4 C -0.534 4.534 5 H 0.060 0.940 6 C 0.066 3.934 7 N -0.884 5.884 8 Si 0.902 3.098 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.276 1.276 12 N -0.708 5.708 13 C 0.505 3.495 14 O -0.557 6.557 15 C -0.106 4.106 16 H 0.091 0.909 17 C -0.144 4.144 18 C -0.063 4.063 19 C -0.071 4.071 20 C -0.116 4.116 21 C -0.121 4.121 22 C -0.131 4.131 23 C -0.120 4.120 24 C -0.118 4.118 25 H 0.089 0.911 26 H 0.014 0.986 27 H 0.025 0.975 28 H 0.265 0.735 29 H 0.388 0.612 30 H 0.061 0.939 31 H 0.064 0.936 32 H 0.059 0.941 33 H 0.081 0.919 34 H 0.078 0.922 35 H 0.122 0.878 36 H 0.119 0.881 37 H 0.117 0.883 38 H 0.119 0.881 39 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.893 -6.484 17.781 19.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.162 3.838 3 H 0.066 0.934 4 C -0.573 4.573 5 H 0.078 0.922 6 C -0.137 4.137 7 N -0.521 5.521 8 Si 0.729 3.271 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.202 1.202 12 N -0.356 5.356 13 C 0.289 3.711 14 O -0.436 6.436 15 C -0.128 4.128 16 H 0.109 0.891 17 C -0.201 4.201 18 C -0.101 4.101 19 C -0.071 4.071 20 C -0.134 4.134 21 C -0.139 4.139 22 C -0.149 4.149 23 C -0.138 4.138 24 C -0.136 4.136 25 H 0.108 0.892 26 H 0.033 0.967 27 H 0.045 0.955 28 H 0.075 0.925 29 H 0.220 0.780 30 H 0.080 0.920 31 H 0.083 0.917 32 H 0.078 0.922 33 H 0.099 0.901 34 H 0.097 0.903 35 H 0.140 0.860 36 H 0.137 0.863 37 H 0.135 0.865 38 H 0.137 0.863 39 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 4.583 -5.504 17.623 19.022 hybrid contribution 0.448 -0.980 -0.901 1.405 sum 5.031 -6.484 16.722 18.627 Atomic orbital electron populations 1.22068 0.98535 0.99032 1.00837 1.18724 0.90992 0.93965 0.80115 0.93450 1.21197 1.32461 1.13207 0.90408 0.92169 1.24891 0.94823 0.94955 0.99046 1.69898 1.35863 1.22427 1.23956 0.86509 0.79172 0.79587 0.81831 1.20161 1.21131 1.20180 1.46524 1.64984 1.13505 1.10551 1.20387 0.78595 0.87379 0.84710 1.90642 1.51521 1.16205 1.85259 1.21271 1.01025 0.96789 0.93686 0.89093 1.21829 0.99179 0.97112 1.02027 1.20421 1.02026 0.97094 0.90512 1.20015 0.93629 0.97342 0.96161 1.21120 0.99892 0.97893 0.94467 1.21132 0.95119 0.99849 0.97834 1.21103 0.93991 1.00228 0.99539 1.21131 0.99684 0.98060 0.94923 1.21129 0.94613 0.99946 0.97876 0.89210 0.96701 0.95536 0.92535 0.77979 0.92031 0.91712 0.92218 0.90055 0.90335 0.86010 0.86321 0.86473 0.86297 0.85995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.68 9.26 37.16 0.34 -3.34 16 2 C 0.26 6.79 2.56 -69.08 -0.18 6.61 16 3 H 0.05 1.41 7.58 -51.93 -0.39 1.02 16 4 C -0.53 -14.28 8.73 -34.44 -0.30 -14.58 16 5 H 0.06 1.53 7.74 -52.49 -0.41 1.13 16 6 C 0.07 1.79 5.30 -17.82 -0.09 1.69 16 7 N -0.88 -25.10 11.32 55.43 0.63 -24.48 16 8 Si 0.90 20.72 29.54 -169.99 -5.02 15.70 16 9 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 10 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 11 H -0.28 -6.30 7.11 56.52 0.40 -5.89 16 12 N -0.71 -14.84 4.96 -54.93 -0.27 -15.11 16 13 C 0.50 10.03 7.12 -10.98 -0.08 9.95 16 14 O -0.56 -13.31 15.58 5.56 0.09 -13.23 16 15 C -0.11 -1.54 2.71 -91.77 -0.25 -1.79 16 16 H 0.09 1.22 8.14 -51.93 -0.42 0.79 16 17 C -0.14 -1.78 8.68 37.16 0.32 -1.46 16 18 C -0.06 -0.86 4.19 -27.88 -0.12 -0.98 16 19 C -0.07 -0.85 4.70 -104.62 -0.49 -1.34 16 20 C -0.12 -1.24 7.98 -39.58 -0.32 -1.56 16 21 C -0.12 -1.17 10.05 -39.58 -0.40 -1.56 16 22 C -0.13 -1.22 10.05 -39.58 -0.40 -1.62 16 23 C -0.12 -1.18 10.05 -39.59 -0.40 -1.58 16 24 C -0.12 -1.31 9.70 -39.58 -0.38 -1.70 16 25 H 0.09 2.45 6.07 -51.93 -0.32 2.14 16 26 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 28 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 29 H 0.39 7.08 7.96 -40.82 -0.32 6.76 16 30 H 0.06 0.74 7.57 -51.93 -0.39 0.35 16 31 H 0.06 0.70 6.28 -51.93 -0.33 0.38 16 32 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.08 1.20 7.90 -51.93 -0.41 0.79 16 34 H 0.08 1.12 8.08 -51.93 -0.42 0.70 16 35 H 0.12 1.19 8.05 -52.49 -0.42 0.76 16 36 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 37 H 0.12 0.84 8.06 -52.49 -0.42 0.41 16 38 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 39 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 LS Contribution 324.13 15.07 4.88 4.88 Total: -1.00 -30.69 324.13 -8.36 -39.05 By element: Atomic # 1 Polarization: 12.35 SS G_CDS: -5.93 Total: 6.42 kcal Atomic # 6 Polarization: -10.51 SS G_CDS: -2.73 Total: -13.24 kcal Atomic # 7 Polarization: -39.95 SS G_CDS: 0.35 Total: -39.59 kcal Atomic # 8 Polarization: -13.31 SS G_CDS: 0.09 Total: -13.23 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -30.69 -8.36 -39.05 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171821514.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.696 kcal (2) G-P(sol) polarization free energy of solvation -30.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.051 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds