Wall clock time and date at job start Mon Mar 30 2020 06:19:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.50708 * 109.47141 * 239.99699 * 2 1 3 5 5 H 1.07995 * 119.99755 * 240.00383 * 4 2 1 6 6 C 1.37873 * 119.99729 * 60.00006 * 4 2 1 7 7 N 1.31516 * 119.99909 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99980 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46921 * 60.00420 * 8 6 4 10 10 H 1.48496 * 109.46933 * 180.02562 * 8 6 4 11 11 H 1.48498 * 109.46946 * 300.00103 * 8 6 4 12 12 N 1.46506 * 109.47289 * 119.99984 * 2 1 3 13 13 C 1.34775 * 119.99693 * 275.00198 * 12 2 1 14 14 O 1.21274 * 120.00425 * 359.97438 * 13 12 2 15 15 C 1.50706 * 119.99541 * 179.97438 * 13 12 2 16 16 H 1.08999 * 109.46969 * 59.99809 * 15 13 12 17 17 C 1.52995 * 109.46956 * 299.99469 * 15 13 12 18 18 C 1.53000 * 109.46655 * 179.97438 * 15 13 12 19 19 C 1.50705 * 109.46750 * 184.99759 * 18 15 13 20 20 C 1.38237 * 119.99983 * 269.72619 * 19 18 15 21 21 C 1.38238 * 119.99652 * 179.76788 * 20 19 18 22 22 C 1.38238 * 120.00086 * 0.50842 * 21 20 19 23 23 C 1.38235 * 119.99757 * 359.74483 * 22 21 20 24 24 C 1.38231 * 120.00337 * 0.02562 * 23 22 21 25 25 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 26 26 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 27 27 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 28 28 H 0.97002 * 119.99804 * 180.02562 * 7 6 4 29 29 H 0.97000 * 120.00117 * 94.99845 * 12 2 1 30 30 H 1.09003 * 109.47335 * 60.00558 * 17 15 13 31 31 H 1.09002 * 109.46959 * 180.02562 * 17 15 13 32 32 H 1.08999 * 109.47559 * 299.99979 * 17 15 13 33 33 H 1.08993 * 109.47424 * 304.99447 * 18 15 13 34 34 H 1.08999 * 109.47502 * 64.99971 * 18 15 13 35 35 H 1.07997 * 120.00200 * 359.97438 * 20 19 18 36 36 H 1.08002 * 119.99559 * 180.22814 * 21 20 19 37 37 H 1.07999 * 119.99933 * 179.72357 * 22 21 20 38 38 H 1.08002 * 119.99694 * 179.97438 * 23 22 21 39 39 H 1.07996 * 120.00100 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6532 -1.5886 -1.1313 6 6 1.6992 -0.2395 -2.4827 7 7 0.9435 0.8301 -2.6034 8 14 2.3225 -1.1197 -4.0079 9 1 1.8279 -2.5199 -4.0081 10 1 1.8278 -0.4194 -5.2204 11 1 3.8074 -1.1191 -4.0077 12 7 2.0184 -0.6906 1.1962 13 6 2.1470 -0.0182 2.3571 14 8 1.8590 1.1586 2.4115 15 6 2.6489 -0.7288 3.5878 16 1 3.6480 -1.1214 3.3986 17 6 1.7043 -1.8823 3.9314 18 6 2.7010 0.2545 4.7587 19 6 3.3173 -0.4223 5.9559 20 6 2.5146 -1.0910 6.8612 21 6 3.0805 -1.7159 7.9568 22 6 4.4479 -1.6632 8.1527 23 6 5.2499 -0.9901 7.2502 24 6 4.6847 -0.3692 6.1521 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 0.7089 1.1613 -3.4844 29 1 2.2491 -1.6318 1.1527 30 1 1.6675 -2.5827 3.0971 31 1 2.0670 -2.3959 4.8218 32 1 0.7052 -1.4897 4.1206 33 1 3.3031 1.1194 4.4804 34 1 1.6903 0.5797 5.0055 35 1 1.4458 -1.1280 6.7108 36 1 2.4537 -2.2414 8.6620 37 1 4.8894 -2.1476 9.0110 38 1 6.3182 -0.9486 7.4035 39 1 5.3113 0.1570 5.4473 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171821514.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:26 Heat of formation + Delta-G solvation = -53.997283 kcal Electronic energy + Delta-G solvation = -19063.732214 eV Core-core repulsion = 16162.454567 eV Total energy + Delta-G solvation = -2901.277647 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.01030 -39.93705 -36.84577 -35.80855 -34.31069 -32.03500 -31.70959 -30.42778 -27.63441 -27.34225 -24.97945 -23.35412 -22.79479 -21.65330 -20.74790 -18.83497 -17.82637 -17.26205 -17.15510 -16.41823 -16.15693 -15.85944 -15.73624 -14.95608 -14.70371 -14.35774 -14.18080 -14.02242 -13.70134 -13.53049 -13.26625 -13.01339 -12.95801 -12.85423 -12.73654 -12.27315 -12.19361 -12.14550 -12.04483 -11.80901 -11.71769 -11.11987 -10.66260 -10.51671 -9.74510 -9.73613 -9.54080 -8.17887 -6.35924 0.49325 0.56196 1.44574 1.46890 1.54734 1.84123 2.35388 2.62814 2.96029 3.12247 3.76032 3.89703 3.96030 4.17245 4.20088 4.24684 4.37668 4.48026 4.60684 4.71249 4.75538 4.84571 4.89748 4.92044 4.95281 5.08919 5.14421 5.22847 5.25805 5.29659 5.43718 5.61331 5.64492 5.68753 5.69062 5.80619 5.90812 6.09803 6.18718 6.72151 6.98079 7.32028 7.57363 8.88274 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.040046 B = 0.003712 C = 0.003617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 699.030146 B = 7540.349334 C = 7738.987985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.269 3.731 3 H -0.004 1.004 4 C -0.549 4.549 5 H 0.073 0.927 6 C 0.014 3.986 7 N -0.919 5.919 8 Si 0.973 3.027 9 H -0.263 1.263 10 H -0.286 1.286 11 H -0.270 1.270 12 N -0.704 5.704 13 C 0.500 3.500 14 O -0.602 6.602 15 C -0.092 4.092 16 H 0.109 0.891 17 C -0.138 4.138 18 C -0.056 4.056 19 C -0.085 4.085 20 C -0.124 4.124 21 C -0.123 4.123 22 C -0.130 4.130 23 C -0.125 4.125 24 C -0.132 4.132 25 H 0.066 0.934 26 H 0.011 0.989 27 H 0.041 0.959 28 H 0.266 0.734 29 H 0.404 0.596 30 H 0.068 0.932 31 H 0.086 0.914 32 H 0.053 0.947 33 H 0.061 0.939 34 H 0.067 0.933 35 H 0.128 0.872 36 H 0.142 0.858 37 H 0.143 0.857 38 H 0.139 0.861 39 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.938 -9.121 19.051 21.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.166 3.834 3 H 0.014 0.986 4 C -0.587 4.587 5 H 0.091 0.909 6 C -0.186 4.186 7 N -0.557 5.557 8 Si 0.798 3.202 9 H -0.188 1.188 10 H -0.212 1.212 11 H -0.196 1.196 12 N -0.353 5.353 13 C 0.287 3.713 14 O -0.485 6.485 15 C -0.113 4.113 16 H 0.126 0.874 17 C -0.195 4.195 18 C -0.094 4.094 19 C -0.085 4.085 20 C -0.142 4.142 21 C -0.141 4.141 22 C -0.148 4.148 23 C -0.142 4.142 24 C -0.150 4.150 25 H 0.084 0.916 26 H 0.030 0.970 27 H 0.060 0.940 28 H 0.075 0.925 29 H 0.239 0.761 30 H 0.087 0.913 31 H 0.105 0.895 32 H 0.072 0.928 33 H 0.080 0.920 34 H 0.086 0.914 35 H 0.146 0.854 36 H 0.160 0.840 37 H 0.161 0.839 38 H 0.157 0.843 39 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 5.642 -8.180 18.920 21.371 hybrid contribution 0.142 -0.110 -1.208 1.221 sum 5.783 -8.290 17.712 20.393 Atomic orbital electron populations 1.21885 0.98325 0.99433 0.99471 1.18331 0.91130 0.91842 0.82118 0.98612 1.21534 1.32687 1.13613 0.90861 0.90856 1.25826 0.94844 0.95576 1.02395 1.70054 1.36993 1.23942 1.24686 0.85378 0.78649 0.78730 0.77467 1.18753 1.21181 1.19557 1.46292 1.65072 1.14174 1.09717 1.21373 0.77255 0.86949 0.85686 1.90619 1.53289 1.18513 1.86034 1.21233 1.02072 0.97111 0.90902 0.87352 1.21815 0.98274 0.96169 1.03257 1.20280 1.01263 0.96524 0.91301 1.19830 0.94127 0.98590 0.95965 1.21257 1.00231 0.97943 0.94720 1.21444 0.95706 0.99348 0.97615 1.21477 0.93963 0.99424 0.99922 1.21408 1.00932 0.97533 0.94367 1.21256 0.94435 1.00556 0.98749 0.91553 0.97029 0.94035 0.92532 0.76085 0.91339 0.89484 0.92759 0.92009 0.91440 0.85368 0.83995 0.83930 0.84343 0.86045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.83 9.26 71.98 0.67 -6.17 16 2 C 0.27 14.24 2.56 44.25 0.11 14.35 16 3 H 0.00 -0.25 7.58 -2.39 -0.02 -0.27 16 4 C -0.55 -29.38 8.73 25.60 0.22 -29.16 16 5 H 0.07 3.64 7.74 -2.91 -0.02 3.62 16 6 C 0.01 0.74 5.30 84.65 0.45 1.19 16 7 N -0.92 -53.31 11.32 21.45 0.24 -53.07 16 8 Si 0.97 42.15 29.54 68.60 2.03 44.17 16 9 H -0.26 -10.78 7.11 99.48 0.71 -10.07 16 10 H -0.29 -12.32 7.11 99.48 0.71 -11.61 16 11 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 12 N -0.70 -29.67 4.96 -446.08 -2.21 -31.89 16 13 C 0.50 20.24 7.12 87.66 0.62 20.86 16 14 O -0.60 -30.13 15.58 -3.01 -0.05 -30.17 16 15 C -0.09 -2.61 2.71 -11.54 -0.03 -2.64 16 16 H 0.11 2.73 8.14 -2.39 -0.02 2.71 16 17 C -0.14 -3.16 8.68 71.98 0.62 -2.53 16 18 C -0.06 -1.55 4.19 29.85 0.13 -1.42 16 19 C -0.09 -1.93 4.70 -19.86 -0.09 -2.02 16 20 C -0.12 -2.41 7.98 22.27 0.18 -2.23 16 21 C -0.12 -1.99 10.05 22.27 0.22 -1.77 16 22 C -0.13 -2.00 10.05 22.27 0.22 -1.78 16 23 C -0.12 -2.15 10.05 22.27 0.22 -1.92 16 24 C -0.13 -2.78 9.70 22.27 0.22 -2.56 16 25 H 0.07 3.74 6.07 -2.39 -0.01 3.73 16 26 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 27 H 0.04 1.95 8.14 -2.38 -0.02 1.94 16 28 H 0.27 14.59 8.31 -92.71 -0.77 13.82 16 29 H 0.40 14.32 7.96 -92.71 -0.74 13.58 16 30 H 0.07 1.48 7.57 -2.39 -0.02 1.46 16 31 H 0.09 1.65 6.28 -2.39 -0.01 1.63 16 32 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 33 H 0.06 1.92 7.90 -2.39 -0.02 1.90 16 34 H 0.07 1.98 8.08 -2.39 -0.02 1.96 16 35 H 0.13 2.26 8.05 -2.91 -0.02 2.24 16 36 H 0.14 1.59 8.06 -2.91 -0.02 1.57 16 37 H 0.14 1.44 8.06 -2.91 -0.02 1.42 16 38 H 0.14 1.77 8.06 -2.91 -0.02 1.74 16 39 H 0.12 2.46 8.06 -2.91 -0.02 2.43 16 Total: -1.00 -67.88 324.13 4.07 -63.82 By element: Atomic # 1 Polarization: 24.64 SS G_CDS: 0.29 Total: 24.93 kcal Atomic # 6 Polarization: -21.56 SS G_CDS: 3.77 Total: -17.80 kcal Atomic # 7 Polarization: -82.98 SS G_CDS: -1.97 Total: -84.95 kcal Atomic # 8 Polarization: -30.13 SS G_CDS: -0.05 Total: -30.17 kcal Atomic # 14 Polarization: 42.15 SS G_CDS: 2.03 Total: 44.17 kcal Total: -67.88 4.07 -63.82 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171821514.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.821 kcal (2) G-P(sol) polarization free energy of solvation -67.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.818 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds