Wall clock time and date at job start Mon Mar 30 2020 06:26:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08996 * 109.46524 * 2 1 4 4 C 1.50696 * 109.47353 * 240.00133 * 2 1 3 5 5 H 1.07999 * 119.99822 * 239.99950 * 4 2 1 6 6 C 1.37884 * 120.00126 * 59.99809 * 4 2 1 7 7 N 1.31514 * 119.99707 * 180.02562 * 6 4 2 8 8 Si 1.86796 * 119.99956 * 0.27447 * 6 4 2 9 9 H 1.48503 * 109.47407 * 269.72718 * 8 6 4 10 10 H 1.48505 * 109.47281 * 29.72474 * 8 6 4 11 11 H 1.48501 * 109.47274 * 149.72572 * 8 6 4 12 12 N 1.46896 * 109.46979 * 119.99674 * 2 1 3 13 13 C 1.46897 * 111.00119 * 275.00379 * 12 2 1 14 14 H 1.08997 * 110.46032 * 36.15227 * 13 12 2 15 15 C 1.54517 * 110.51332 * 273.54865 * 13 12 2 16 16 C 1.54474 * 104.06277 * 241.35820 * 15 13 12 17 17 O 1.44434 * 104.80680 * 23.97409 * 16 15 13 18 18 C 1.44425 * 105.27309 * 319.49112 * 17 16 15 19 19 H 1.08997 * 110.37215 * 281.68293 * 18 17 16 20 20 C 1.50694 * 110.37110 * 159.34181 * 18 17 16 21 21 C 1.38237 * 120.00283 * 329.34284 * 20 18 17 22 22 C 1.38233 * 120.00267 * 179.74574 * 21 20 18 23 23 C 1.38240 * 119.99847 * 0.52569 * 22 21 20 24 24 C 1.38235 * 119.99751 * 359.75233 * 23 22 21 25 25 C 1.38233 * 120.00256 * 359.97438 * 24 23 22 26 26 H 1.09001 * 109.47420 * 60.00438 * 1 2 3 27 27 H 1.09004 * 109.46832 * 179.97438 * 1 2 3 28 28 H 1.08992 * 109.47457 * 300.00097 * 1 2 3 29 29 H 0.97005 * 119.99656 * 179.97438 * 7 6 4 30 30 H 1.00897 * 111.00381 * 38.96101 * 12 2 1 31 31 H 1.09005 * 110.50797 * 359.97438 * 15 13 12 32 32 H 1.08988 * 110.51248 * 122.57094 * 15 13 12 33 33 H 1.08998 * 110.37311 * 142.80560 * 16 15 13 34 34 H 1.08998 * 110.37123 * 265.03406 * 16 15 13 35 35 H 1.08001 * 119.99871 * 0.02562 * 21 20 18 36 36 H 1.08004 * 120.00185 * 180.30082 * 22 21 20 37 37 H 1.08000 * 119.99772 * 179.76423 * 23 22 21 38 38 H 1.07995 * 119.99569 * 179.97438 * 24 23 22 39 39 H 1.07997 * 119.99956 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2304 5 1 2.6534 -1.5884 -1.1313 6 6 1.6993 -0.2393 -2.4828 7 7 2.1374 -0.8596 -3.5565 8 14 0.6317 1.2839 -2.6542 9 1 -0.7975 0.8837 -2.7035 10 1 0.8552 2.1787 -1.4903 11 1 0.9885 2.0003 -3.9051 12 7 2.0197 -0.6924 1.1994 13 6 2.0824 0.2227 2.3469 14 1 1.2519 0.9280 2.3175 15 6 3.4316 0.9755 2.3659 16 6 4.0810 0.5482 3.7008 17 8 3.4702 -0.7214 4.0187 18 6 2.0762 -0.5703 3.6726 19 1 1.5516 -0.0107 4.4470 20 6 1.4358 -1.9198 3.4737 21 6 2.1886 -2.9796 3.0035 22 6 1.6024 -4.2189 2.8261 23 6 0.2608 -4.3957 3.1086 24 6 -0.4933 -3.3344 3.5733 25 6 0.0942 -2.0966 3.7561 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 1.9028 -0.5284 -4.4376 30 1 1.4497 -1.4979 1.4101 31 1 4.0523 0.6683 1.5242 32 1 3.2681 2.0529 2.3459 33 1 5.1578 0.4313 3.5787 34 1 3.8654 1.2803 4.4791 35 1 3.2358 -2.8405 2.7790 36 1 2.1917 -5.0481 2.4633 37 1 -0.1981 -5.3629 2.9663 38 1 -1.5415 -3.4725 3.7936 39 1 -0.4949 -1.2677 4.1197 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000177045840.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:14 Heat of formation + Delta-G solvation = -6.071744 kcal Electronic energy + Delta-G solvation = -20272.242391 eV Core-core repulsion = 17373.042950 eV Total energy + Delta-G solvation = -2899.199440 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.10070 -38.18187 -35.82050 -32.69217 -31.78661 -30.93600 -30.64450 -28.45349 -26.64658 -25.02879 -23.09985 -22.36382 -21.37038 -20.48712 -19.51437 -17.00600 -16.68184 -16.18549 -15.54240 -15.33928 -14.80564 -14.66608 -14.40641 -13.89594 -13.50181 -13.13496 -12.85279 -12.72098 -12.40443 -12.32531 -11.89655 -11.65883 -11.52029 -11.24537 -10.98108 -10.80418 -10.77987 -10.55984 -10.32757 -10.08869 -9.63163 -9.44643 -9.12993 -8.68165 -8.56109 -8.45631 -7.40747 -6.02426 -3.99111 1.49637 1.64876 3.25626 3.34967 3.38128 3.87463 4.17101 4.41537 4.80876 4.86540 4.99471 5.08837 5.18146 5.27765 5.29537 5.32377 5.39626 5.51125 5.68203 5.73550 5.81413 5.92656 5.97421 6.09743 6.14734 6.20011 6.28975 6.32007 6.52191 6.55390 6.63788 6.71912 6.76269 6.78547 7.05894 7.16775 7.20474 7.74418 7.94943 8.37887 8.72606 9.09684 9.60556 11.11191 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.018068 B = 0.007424 C = 0.006177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1549.329255 B = 3770.444336 C = 4531.612855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.182 3.818 3 H 0.033 0.967 4 C -0.494 4.494 5 H 0.081 0.919 6 C 0.067 3.933 7 N -0.901 5.901 8 Si 0.885 3.115 9 H -0.281 1.281 10 H -0.270 1.270 11 H -0.297 1.297 12 N -0.659 5.659 13 C 0.060 3.940 14 H 0.049 0.951 15 C -0.147 4.147 16 C 0.049 3.951 17 O -0.362 6.362 18 C 0.116 3.884 19 H 0.073 0.927 20 C -0.084 4.084 21 C -0.070 4.070 22 C -0.122 4.122 23 C -0.118 4.118 24 C -0.126 4.126 25 C -0.115 4.115 26 H 0.044 0.956 27 H 0.053 0.947 28 H 0.024 0.976 29 H 0.262 0.738 30 H 0.338 0.662 31 H 0.095 0.905 32 H 0.068 0.932 33 H 0.090 0.910 34 H 0.052 0.948 35 H 0.133 0.867 36 H 0.122 0.878 37 H 0.118 0.882 38 H 0.119 0.881 39 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.494 -0.264 16.057 16.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.073 3.927 3 H 0.050 0.950 4 C -0.532 4.532 5 H 0.099 0.901 6 C -0.134 4.134 7 N -0.540 5.540 8 Si 0.716 3.284 9 H -0.209 1.209 10 H -0.196 1.196 11 H -0.225 1.225 12 N -0.293 5.293 13 C -0.051 4.051 14 H 0.067 0.933 15 C -0.185 4.185 16 C -0.028 4.028 17 O -0.281 6.281 18 C 0.058 3.942 19 H 0.090 0.910 20 C -0.085 4.085 21 C -0.088 4.088 22 C -0.141 4.141 23 C -0.136 4.136 24 C -0.144 4.144 25 C -0.134 4.134 26 H 0.063 0.937 27 H 0.072 0.928 28 H 0.043 0.957 29 H 0.072 0.928 30 H 0.160 0.840 31 H 0.114 0.886 32 H 0.086 0.914 33 H 0.108 0.892 34 H 0.070 0.930 35 H 0.151 0.849 36 H 0.140 0.860 37 H 0.136 0.864 38 H 0.137 0.863 39 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -1.719 -0.380 15.776 15.874 hybrid contribution -1.827 1.226 -0.261 2.215 sum -3.546 0.846 15.515 15.937 Atomic orbital electron populations 1.22851 1.01707 1.00812 0.98663 1.19675 0.88378 0.95088 0.89589 0.94966 1.20961 1.30973 1.13633 0.87653 0.90062 1.24936 0.96007 0.96564 0.95915 1.69887 1.45971 1.40377 0.97783 0.86912 0.80584 0.84114 0.76805 1.20875 1.19568 1.22459 1.60866 1.58327 1.08305 1.01838 1.22794 0.96732 0.94373 0.91186 0.93309 1.23068 0.97162 0.99367 0.98923 1.23346 0.98534 0.85533 0.95391 1.89119 1.19997 1.33445 1.85515 1.21930 0.83662 0.92973 0.95612 0.90973 1.19494 0.93834 0.94705 1.00421 1.21061 1.00831 0.91548 0.95355 1.21204 0.95148 0.97600 1.00099 1.21140 0.94408 0.98789 0.99312 1.20984 0.99570 0.93018 1.00852 1.20871 0.94179 0.97445 1.00869 0.93699 0.92831 0.95711 0.92768 0.83955 0.88620 0.91371 0.89183 0.92996 0.84885 0.85986 0.86366 0.86335 0.86505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.99 8.63 37.16 0.32 -3.67 16 2 C 0.18 4.30 2.03 -68.87 -0.14 4.16 16 3 H 0.03 0.79 6.78 -51.93 -0.35 0.44 16 4 C -0.49 -14.00 9.42 -34.44 -0.32 -14.33 16 5 H 0.08 2.55 8.06 -52.49 -0.42 2.13 16 6 C 0.07 1.94 5.45 -17.82 -0.10 1.84 16 7 N -0.90 -27.80 13.96 55.43 0.77 -27.02 16 8 Si 0.88 22.11 24.38 -169.99 -4.14 17.97 16 9 H -0.28 -6.89 6.87 56.52 0.39 -6.50 16 10 H -0.27 -6.46 6.52 56.52 0.37 -6.10 16 11 H -0.30 -7.44 7.11 56.52 0.40 -7.04 16 12 N -0.66 -13.56 5.56 -99.31 -0.55 -14.11 16 13 C 0.06 1.02 3.11 -66.14 -0.21 0.82 16 14 H 0.05 0.82 7.20 -51.93 -0.37 0.45 16 15 C -0.15 -2.26 6.70 -25.16 -0.17 -2.43 16 16 C 0.05 0.65 7.63 37.93 0.29 0.94 16 17 O -0.36 -5.67 10.41 -35.23 -0.37 -6.03 16 18 C 0.12 1.75 3.47 -27.11 -0.09 1.66 16 19 H 0.07 0.95 8.10 -51.93 -0.42 0.53 16 20 C -0.08 -1.29 3.54 -104.63 -0.37 -1.66 16 21 C -0.07 -1.10 7.89 -39.58 -0.31 -1.41 16 22 C -0.12 -1.73 10.05 -39.58 -0.40 -2.13 16 23 C -0.12 -1.53 10.05 -39.58 -0.40 -1.93 16 24 C -0.13 -1.61 10.05 -39.58 -0.40 -2.01 16 25 C -0.12 -1.58 9.71 -39.58 -0.38 -1.96 16 26 H 0.04 1.03 3.29 -51.93 -0.17 0.86 16 27 H 0.05 1.17 8.13 -51.93 -0.42 0.75 16 28 H 0.02 0.47 7.45 -51.93 -0.39 0.08 16 29 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 30 H 0.34 6.88 5.15 -39.29 -0.20 6.68 16 31 H 0.10 1.71 7.97 -51.93 -0.41 1.29 16 32 H 0.07 0.93 8.14 -51.94 -0.42 0.51 16 33 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 34 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 35 H 0.13 2.23 7.54 -52.49 -0.40 1.83 16 36 H 0.12 1.51 8.06 -52.48 -0.42 1.08 16 37 H 0.12 1.25 8.06 -52.49 -0.42 0.82 16 38 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 39 H 0.12 1.37 8.06 -52.49 -0.42 0.95 16 LS Contribution 307.14 15.07 4.63 4.63 Total: -1.00 -31.01 307.14 -8.04 -39.05 By element: Atomic # 1 Polarization: 13.34 SS G_CDS: -5.70 Total: 7.64 kcal Atomic # 6 Polarization: -19.44 SS G_CDS: -2.68 Total: -22.12 kcal Atomic # 7 Polarization: -41.35 SS G_CDS: 0.22 Total: -41.13 kcal Atomic # 8 Polarization: -5.67 SS G_CDS: -0.37 Total: -6.03 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -4.14 Total: 17.97 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -31.01 -8.04 -39.05 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177045840.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.977 kcal (2) G-P(sol) polarization free energy of solvation -31.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds