Wall clock time and date at job start Mon Mar 30 2020 06:26:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08996 * 109.46524 * 2 1 4 4 C 1.50696 * 109.47353 * 240.00133 * 2 1 3 5 5 H 1.07999 * 119.99822 * 239.99950 * 4 2 1 6 6 C 1.37884 * 120.00126 * 59.99809 * 4 2 1 7 7 N 1.31514 * 119.99707 * 180.02562 * 6 4 2 8 8 Si 1.86796 * 119.99956 * 0.27447 * 6 4 2 9 9 H 1.48503 * 109.47407 * 269.72718 * 8 6 4 10 10 H 1.48505 * 109.47281 * 29.72474 * 8 6 4 11 11 H 1.48501 * 109.47274 * 149.72572 * 8 6 4 12 12 N 1.46896 * 109.46979 * 119.99674 * 2 1 3 13 13 C 1.46897 * 111.00119 * 275.00379 * 12 2 1 14 14 H 1.08997 * 110.46032 * 36.15227 * 13 12 2 15 15 C 1.54517 * 110.51332 * 273.54865 * 13 12 2 16 16 C 1.54474 * 104.06277 * 241.35820 * 15 13 12 17 17 O 1.44434 * 104.80680 * 23.97409 * 16 15 13 18 18 C 1.44425 * 105.27309 * 319.49112 * 17 16 15 19 19 H 1.08997 * 110.37215 * 281.68293 * 18 17 16 20 20 C 1.50694 * 110.37110 * 159.34181 * 18 17 16 21 21 C 1.38237 * 120.00283 * 329.34284 * 20 18 17 22 22 C 1.38233 * 120.00267 * 179.74574 * 21 20 18 23 23 C 1.38240 * 119.99847 * 0.52569 * 22 21 20 24 24 C 1.38235 * 119.99751 * 359.75233 * 23 22 21 25 25 C 1.38233 * 120.00256 * 359.97438 * 24 23 22 26 26 H 1.09001 * 109.47420 * 60.00438 * 1 2 3 27 27 H 1.09004 * 109.46832 * 179.97438 * 1 2 3 28 28 H 1.08992 * 109.47457 * 300.00097 * 1 2 3 29 29 H 0.97005 * 119.99656 * 179.97438 * 7 6 4 30 30 H 1.00897 * 111.00381 * 38.96101 * 12 2 1 31 31 H 1.09005 * 110.50797 * 359.97438 * 15 13 12 32 32 H 1.08988 * 110.51248 * 122.57094 * 15 13 12 33 33 H 1.08998 * 110.37311 * 142.80560 * 16 15 13 34 34 H 1.08998 * 110.37123 * 265.03406 * 16 15 13 35 35 H 1.08001 * 119.99871 * 0.02562 * 21 20 18 36 36 H 1.08004 * 120.00185 * 180.30082 * 22 21 20 37 37 H 1.08000 * 119.99772 * 179.76423 * 23 22 21 38 38 H 1.07995 * 119.99569 * 179.97438 * 24 23 22 39 39 H 1.07997 * 119.99956 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2304 5 1 2.6534 -1.5884 -1.1313 6 6 1.6993 -0.2393 -2.4828 7 7 2.1374 -0.8596 -3.5565 8 14 0.6317 1.2839 -2.6542 9 1 -0.7975 0.8837 -2.7035 10 1 0.8552 2.1787 -1.4903 11 1 0.9885 2.0003 -3.9051 12 7 2.0197 -0.6924 1.1994 13 6 2.0824 0.2227 2.3469 14 1 1.2519 0.9280 2.3175 15 6 3.4316 0.9755 2.3659 16 6 4.0810 0.5482 3.7008 17 8 3.4702 -0.7214 4.0187 18 6 2.0762 -0.5703 3.6726 19 1 1.5516 -0.0107 4.4470 20 6 1.4358 -1.9198 3.4737 21 6 2.1886 -2.9796 3.0035 22 6 1.6024 -4.2189 2.8261 23 6 0.2608 -4.3957 3.1086 24 6 -0.4933 -3.3344 3.5733 25 6 0.0942 -2.0966 3.7561 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 1.9028 -0.5284 -4.4376 30 1 1.4497 -1.4979 1.4101 31 1 4.0523 0.6683 1.5242 32 1 3.2681 2.0529 2.3459 33 1 5.1578 0.4313 3.5787 34 1 3.8654 1.2803 4.4791 35 1 3.2358 -2.8405 2.7790 36 1 2.1917 -5.0481 2.4633 37 1 -0.1981 -5.3629 2.9663 38 1 -1.5415 -3.4725 3.7936 39 1 -0.4949 -1.2677 4.1197 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000177045840.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:13 Heat of formation + Delta-G solvation = -26.816657 kcal Electronic energy + Delta-G solvation = -20273.141958 eV Core-core repulsion = 17373.042950 eV Total energy + Delta-G solvation = -2900.099007 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.27028 -39.27083 -37.48898 -34.58143 -33.02520 -32.45842 -31.73442 -29.85534 -27.95365 -27.10071 -24.22747 -23.42705 -22.77322 -21.95850 -20.90362 -18.83755 -17.98150 -17.53721 -16.78983 -16.62525 -16.43833 -16.11459 -15.47572 -15.22916 -14.96530 -14.75395 -14.21190 -14.14937 -13.84408 -13.72123 -13.52404 -13.16775 -12.77958 -12.68471 -12.53588 -12.19336 -12.00884 -11.91727 -11.83598 -11.64621 -11.44328 -11.16577 -10.77562 -10.67435 -9.74688 -9.56527 -8.99780 -8.26574 -6.28589 0.43267 0.57951 1.28045 1.33564 1.43993 2.31660 2.79298 3.07303 3.08715 3.45191 3.65401 3.80890 4.05615 4.15194 4.24100 4.29625 4.32511 4.38152 4.43375 4.47010 4.57993 4.59808 4.68531 4.74155 4.80205 4.89916 4.93454 4.99131 5.11397 5.22822 5.28869 5.38201 5.59744 5.65257 5.67858 5.69021 5.94301 6.08585 6.16642 6.71649 6.76424 6.79977 7.36134 8.91087 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.018068 B = 0.007424 C = 0.006177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1549.329255 B = 3770.444336 C = 4531.612855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.188 3.812 3 H 0.030 0.970 4 C -0.499 4.499 5 H 0.030 0.970 6 C 0.007 3.993 7 N -0.952 5.952 8 Si 0.953 3.047 9 H -0.268 1.268 10 H -0.248 1.248 11 H -0.299 1.299 12 N -0.673 5.673 13 C 0.054 3.946 14 H 0.061 0.939 15 C -0.148 4.148 16 C 0.051 3.949 17 O -0.383 6.383 18 C 0.121 3.879 19 H 0.101 0.899 20 C -0.100 4.100 21 C -0.094 4.094 22 C -0.138 4.138 23 C -0.122 4.122 24 C -0.126 4.126 25 C -0.119 4.119 26 H 0.037 0.963 27 H 0.047 0.953 28 H 0.060 0.940 29 H 0.264 0.736 30 H 0.338 0.662 31 H 0.060 0.940 32 H 0.089 0.911 33 H 0.096 0.904 34 H 0.084 0.916 35 H 0.108 0.892 36 H 0.129 0.871 37 H 0.143 0.857 38 H 0.149 0.851 39 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.837 1.463 18.228 18.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.079 3.921 3 H 0.047 0.953 4 C -0.538 4.538 5 H 0.048 0.952 6 C -0.189 4.189 7 N -0.593 5.593 8 Si 0.780 3.220 9 H -0.194 1.194 10 H -0.172 1.172 11 H -0.227 1.227 12 N -0.307 5.307 13 C -0.057 4.057 14 H 0.079 0.921 15 C -0.186 4.186 16 C -0.025 4.025 17 O -0.302 6.302 18 C 0.064 3.936 19 H 0.119 0.881 20 C -0.101 4.101 21 C -0.112 4.112 22 C -0.156 4.156 23 C -0.140 4.140 24 C -0.144 4.144 25 C -0.137 4.137 26 H 0.055 0.945 27 H 0.066 0.934 28 H 0.079 0.921 29 H 0.073 0.927 30 H 0.161 0.839 31 H 0.079 0.921 32 H 0.108 0.892 33 H 0.115 0.885 34 H 0.102 0.898 35 H 0.127 0.873 36 H 0.147 0.853 37 H 0.161 0.839 38 H 0.166 0.834 39 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -4.056 1.345 17.983 18.484 hybrid contribution -1.008 0.567 -0.903 1.467 sum -5.064 1.912 17.081 17.918 Atomic orbital electron populations 1.22706 0.99750 1.00974 0.99961 1.19417 0.89710 0.94132 0.88874 0.95258 1.21234 1.30029 1.12295 0.90251 0.95173 1.25825 0.97615 1.00135 0.95333 1.70059 1.48055 1.42687 0.98496 0.85802 0.78928 0.79983 0.77299 1.19435 1.17190 1.22656 1.60705 1.58457 1.09048 1.02492 1.22948 0.97731 0.94229 0.90748 0.92134 1.23063 0.96134 1.00479 0.98960 1.23482 0.98713 0.85327 0.94982 1.89112 1.20673 1.34867 1.85538 1.22003 0.83641 0.92927 0.95077 0.88116 1.19658 0.94760 0.94619 1.01047 1.21000 1.00091 0.92962 0.97150 1.21411 0.96288 0.97387 1.00507 1.21483 0.93758 1.00255 0.98484 1.21401 1.00976 0.92467 0.99554 1.21193 0.93551 0.98669 1.00296 0.94477 0.93361 0.92079 0.92688 0.83947 0.92084 0.89231 0.88530 0.89778 0.87348 0.85323 0.83916 0.83351 0.84072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -7.25 8.63 71.98 0.62 -6.63 16 2 C 0.19 8.80 2.03 44.17 0.09 8.89 16 3 H 0.03 1.40 6.78 -2.39 -0.02 1.38 16 4 C -0.50 -29.25 9.42 25.60 0.24 -29.01 16 5 H 0.03 2.01 8.06 -2.91 -0.02 1.99 16 6 C 0.01 0.43 5.45 84.66 0.46 0.89 16 7 N -0.95 -60.72 13.96 21.45 0.30 -60.42 16 8 Si 0.95 45.23 24.38 68.60 1.67 46.90 16 9 H -0.27 -12.10 6.87 99.48 0.68 -11.42 16 10 H -0.25 -10.79 6.52 99.48 0.65 -10.14 16 11 H -0.30 -14.17 7.11 99.48 0.71 -13.47 16 12 N -0.67 -27.65 5.56 -468.12 -2.60 -30.25 16 13 C 0.05 1.73 3.11 45.94 0.14 1.88 16 14 H 0.06 1.81 7.20 -2.39 -0.02 1.79 16 15 C -0.15 -4.37 6.70 31.61 0.21 -4.16 16 16 C 0.05 1.26 7.63 72.48 0.55 1.81 16 17 O -0.38 -11.58 10.41 -148.98 -1.55 -13.13 16 18 C 0.12 3.40 3.47 30.35 0.11 3.51 16 19 H 0.10 2.25 8.10 -2.39 -0.02 2.23 16 20 C -0.10 -2.94 3.54 -19.87 -0.07 -3.01 16 21 C -0.09 -3.03 7.89 22.27 0.18 -2.85 16 22 C -0.14 -3.93 10.05 22.27 0.22 -3.71 16 23 C -0.12 -2.95 10.05 22.27 0.22 -2.72 16 24 C -0.13 -2.85 10.05 22.27 0.22 -2.62 16 25 C -0.12 -2.92 9.71 22.27 0.22 -2.70 16 26 H 0.04 1.58 3.29 -2.39 -0.01 1.58 16 27 H 0.05 2.02 8.13 -2.38 -0.02 2.00 16 28 H 0.06 2.07 7.45 -2.39 -0.02 2.06 16 29 H 0.26 15.77 8.31 -92.70 -0.77 15.00 16 30 H 0.34 13.80 5.15 -89.70 -0.46 13.33 16 31 H 0.06 2.22 7.97 -2.38 -0.02 2.20 16 32 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 33 H 0.10 2.21 8.14 -2.39 -0.02 2.19 16 34 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 35 H 0.11 3.92 7.54 -2.91 -0.02 3.89 16 36 H 0.13 3.30 8.06 -2.91 -0.02 3.28 16 37 H 0.14 2.66 8.06 -2.91 -0.02 2.64 16 38 H 0.15 2.43 8.06 -2.91 -0.02 2.40 16 39 H 0.14 2.70 8.06 -2.91 -0.02 2.68 16 Total: -1.00 -69.72 307.14 1.73 -67.99 By element: Atomic # 1 Polarization: 28.86 SS G_CDS: 0.49 Total: 29.35 kcal Atomic # 6 Polarization: -43.86 SS G_CDS: 3.42 Total: -40.44 kcal Atomic # 7 Polarization: -88.37 SS G_CDS: -2.30 Total: -90.67 kcal Atomic # 8 Polarization: -11.58 SS G_CDS: -1.55 Total: -13.13 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 1.67 Total: 46.90 kcal Total: -69.72 1.73 -67.99 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177045840.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.171 kcal (2) G-P(sol) polarization free energy of solvation -69.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.988 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds