Wall clock time and date at job start Mon Mar 30 2020 06:26:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.47202 * 2 1 4 4 C 1.50692 * 109.47446 * 239.99775 * 2 1 3 5 5 H 1.08005 * 120.00161 * 245.55571 * 4 2 1 6 6 C 1.37880 * 119.99914 * 65.54900 * 4 2 1 7 7 N 1.31508 * 120.00176 * 5.23609 * 6 4 2 8 8 Si 1.86805 * 119.99632 * 185.23399 * 6 4 2 9 9 H 1.48497 * 109.46976 * 95.00056 * 8 6 4 10 10 H 1.48503 * 109.46805 * 215.00018 * 8 6 4 11 11 H 1.48492 * 109.47385 * 334.99702 * 8 6 4 12 12 N 1.46905 * 109.47189 * 119.99370 * 2 1 3 13 13 C 1.46905 * 111.00108 * 279.42730 * 12 2 1 14 14 H 1.08999 * 110.43745 * 27.92952 * 13 12 2 15 15 C 1.54815 * 110.48633 * 150.47548 * 13 12 2 16 16 C 1.54990 * 102.09155 * 97.79561 * 15 13 12 17 17 O 1.44381 * 103.49196 * 37.01970 * 16 15 13 18 18 C 1.43737 * 106.97565 * 319.94219 * 17 16 15 19 19 H 1.09008 * 109.87644 * 267.08737 * 18 17 16 20 20 C 1.50696 * 109.87979 * 145.93845 * 18 17 16 21 21 C 1.38238 * 119.99919 * 326.89174 * 20 18 17 22 22 C 1.38242 * 119.99928 * 179.76884 * 21 20 18 23 23 C 1.38229 * 120.00079 * 0.50618 * 22 21 20 24 24 C 1.38241 * 119.99931 * 359.74728 * 23 22 21 25 25 C 1.38232 * 119.99933 * 359.97438 * 24 23 22 26 26 H 1.09000 * 109.46811 * 174.97060 * 1 2 3 27 27 H 1.08998 * 109.47284 * 294.96305 * 1 2 3 28 28 H 1.08997 * 109.47203 * 54.97274 * 1 2 3 29 29 H 0.96997 * 119.99909 * 180.02562 * 7 6 4 30 30 H 1.00901 * 110.99602 * 43.37940 * 12 2 1 31 31 H 1.08999 * 110.90183 * 215.99663 * 15 13 12 32 32 H 1.09000 * 110.90541 * 339.59509 * 15 13 12 33 33 H 1.09001 * 110.61629 * 155.52431 * 16 15 13 34 34 H 1.08999 * 110.61878 * 278.51930 * 16 15 13 35 35 H 1.08000 * 119.99547 * 359.97438 * 21 20 18 36 36 H 1.07999 * 119.99819 * 180.23039 * 22 21 20 37 37 H 1.07994 * 120.00297 * 179.72788 * 23 22 21 38 38 H 1.08001 * 119.99966 * 179.97438 * 24 23 22 39 39 H 1.07997 * 120.00177 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2303 5 1 2.5773 -1.6379 -1.1338 6 6 1.7963 -0.1764 -2.4794 7 7 1.2241 1.0022 -2.5933 8 14 2.2891 -1.1273 -4.0100 9 1 1.1234 -1.8997 -4.5096 10 1 2.7400 -0.1776 -5.0588 11 1 3.3958 -2.0602 -3.6782 12 7 2.0197 -0.6924 1.1995 13 6 1.9834 0.1938 2.3706 14 1 1.1983 0.9414 2.2580 15 6 1.7679 -0.6275 3.6651 16 6 3.2143 -0.7714 4.2030 17 8 3.8204 0.4996 3.8838 18 6 3.3519 0.8715 2.5768 19 1 4.0548 0.5255 1.8188 20 6 3.2002 2.3685 2.4936 21 6 2.8234 3.0882 3.6121 22 6 2.6888 4.4620 3.5370 23 6 2.9208 5.1149 2.3409 24 6 3.2925 4.3945 1.2210 25 6 3.4326 3.0215 1.2976 26 1 -0.3633 -1.0237 -0.0901 27 1 -0.3634 0.4337 0.9316 28 1 -0.3633 0.5898 -0.8415 29 1 1.0577 1.3776 -3.4720 30 1 1.4947 -1.5372 1.3690 31 1 1.1424 -0.0823 4.3720 32 1 1.3378 -1.6034 3.4396 33 1 3.2087 -0.9342 5.2807 34 1 3.7341 -1.5831 3.6939 35 1 2.6375 2.5775 4.5454 36 1 2.3981 5.0247 4.4118 37 1 2.8114 6.1876 2.2811 38 1 3.4733 4.9046 0.2864 39 1 3.7226 2.4586 0.4226 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000177045866.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:15 Heat of formation + Delta-G solvation = -21.950243 kcal Electronic energy + Delta-G solvation = -20059.446221 eV Core-core repulsion = 17159.558238 eV Total energy + Delta-G solvation = -2899.887984 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.84536 -38.08903 -35.64629 -32.70412 -31.68805 -30.60226 -30.51117 -28.05770 -26.21558 -25.11644 -23.00429 -22.09347 -21.24787 -20.45369 -19.87688 -16.95574 -16.36981 -15.69821 -15.49960 -15.14474 -14.72097 -14.40508 -14.04021 -13.71444 -13.42609 -12.99897 -12.79218 -12.60747 -12.36589 -12.03676 -11.57296 -11.45216 -11.32567 -11.03050 -10.84783 -10.72639 -10.62731 -10.51576 -10.45116 -10.21566 -9.78095 -9.41753 -9.02091 -8.55358 -8.39165 -8.32193 -7.37341 -6.02100 -4.03257 1.66932 1.77100 3.30698 3.38061 3.42098 4.01895 4.28951 4.43315 4.81439 4.98244 5.23183 5.24299 5.27373 5.30543 5.32832 5.42063 5.56900 5.69206 5.84548 5.89210 5.93994 6.06386 6.09315 6.17360 6.32833 6.35696 6.49131 6.61067 6.73518 6.78847 6.86535 6.96490 7.02423 7.19283 7.34982 7.40358 7.59203 7.84636 8.18499 8.45406 8.57328 9.03257 9.61174 11.06883 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.017841 B = 0.006941 C = 0.005577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1569.035299 B = 4033.109297 C = 5019.161575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.209 3.791 3 H 0.045 0.955 4 C -0.499 4.499 5 H 0.061 0.939 6 C 0.059 3.941 7 N -0.894 5.894 8 Si 0.893 3.107 9 H -0.283 1.283 10 H -0.288 1.288 11 H -0.274 1.274 12 N -0.674 5.674 13 C 0.065 3.935 14 H 0.058 0.942 15 C -0.160 4.160 16 C 0.053 3.947 17 O -0.376 6.376 18 C 0.126 3.874 19 H 0.093 0.907 20 C -0.079 4.079 21 C -0.102 4.102 22 C -0.132 4.132 23 C -0.127 4.127 24 C -0.119 4.119 25 C -0.096 4.096 26 H 0.031 0.969 27 H 0.007 0.993 28 H 0.072 0.928 29 H 0.259 0.741 30 H 0.329 0.671 31 H 0.072 0.928 32 H 0.080 0.920 33 H 0.084 0.916 34 H 0.064 0.936 35 H 0.120 0.880 36 H 0.116 0.884 37 H 0.116 0.884 38 H 0.121 0.879 39 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.477 2.793 11.914 12.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.102 3.898 3 H 0.063 0.937 4 C -0.538 4.538 5 H 0.080 0.920 6 C -0.142 4.142 7 N -0.533 5.533 8 Si 0.721 3.279 9 H -0.209 1.209 10 H -0.214 1.214 11 H -0.198 1.198 12 N -0.305 5.305 13 C -0.046 4.046 14 H 0.076 0.924 15 C -0.198 4.198 16 C -0.023 4.023 17 O -0.295 6.295 18 C 0.067 3.933 19 H 0.110 0.890 20 C -0.079 4.079 21 C -0.120 4.120 22 C -0.150 4.150 23 C -0.145 4.145 24 C -0.137 4.137 25 C -0.114 4.114 26 H 0.050 0.950 27 H 0.026 0.974 28 H 0.091 0.909 29 H 0.069 0.931 30 H 0.147 0.853 31 H 0.091 0.909 32 H 0.099 0.901 33 H 0.102 0.898 34 H 0.082 0.918 35 H 0.138 0.862 36 H 0.134 0.866 37 H 0.134 0.866 38 H 0.139 0.861 39 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 2.233 3.171 11.757 12.381 hybrid contribution -1.068 -0.493 -0.953 1.514 sum 1.166 2.679 10.804 11.192 Atomic orbital electron populations 1.22397 1.01205 0.99679 0.99087 1.19275 0.89116 0.95173 0.86265 0.93722 1.21089 1.34718 1.08229 0.89736 0.92029 1.24926 0.95494 0.94849 0.98948 1.69942 1.43738 1.16002 1.23580 0.86561 0.78675 0.79785 0.82854 1.20932 1.21372 1.19842 1.60873 1.60485 1.06814 1.02378 1.22764 0.95441 0.95407 0.91004 0.92392 1.23385 0.97908 1.00905 0.97591 1.23426 0.91850 0.87127 0.99921 1.88820 1.69604 1.36799 1.34290 1.21765 0.96208 0.89910 0.85376 0.88975 1.19872 0.99367 0.94750 0.93948 1.20924 0.99073 0.93718 0.98290 1.21049 1.01681 0.94563 0.97672 1.21087 1.00615 0.99476 0.93296 1.21111 1.00054 0.94189 0.98350 1.21152 0.98263 0.94467 0.97485 0.95035 0.97393 0.90874 0.93080 0.85332 0.90913 0.90104 0.89768 0.91758 0.86160 0.86636 0.86631 0.86113 0.85111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.83 8.95 37.16 0.33 -3.50 16 2 C 0.21 5.05 2.30 -68.87 -0.16 4.90 16 3 H 0.04 1.20 7.47 -51.93 -0.39 0.81 16 4 C -0.50 -13.40 8.77 -34.44 -0.30 -13.70 16 5 H 0.06 1.67 7.82 -52.48 -0.41 1.26 16 6 C 0.06 1.61 5.29 -17.82 -0.09 1.51 16 7 N -0.89 -25.15 12.00 55.43 0.67 -24.49 16 8 Si 0.89 21.19 29.54 -169.99 -5.02 16.17 16 9 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 10 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 11 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 12 N -0.67 -13.65 5.99 -99.35 -0.60 -14.24 16 13 C 0.07 1.15 2.75 -66.18 -0.18 0.97 16 14 H 0.06 1.13 6.46 -51.93 -0.34 0.80 16 15 C -0.16 -2.23 6.83 -24.72 -0.17 -2.39 16 16 C 0.05 0.73 7.72 38.21 0.29 1.02 16 17 O -0.38 -6.25 10.30 -35.23 -0.36 -6.61 16 18 C 0.13 2.25 3.44 -27.31 -0.09 2.15 16 19 H 0.09 1.84 7.87 -51.92 -0.41 1.43 16 20 C -0.08 -1.39 4.80 -104.62 -0.50 -1.90 16 21 C -0.10 -1.61 9.36 -39.58 -0.37 -1.98 16 22 C -0.13 -1.86 10.05 -39.58 -0.40 -2.26 16 23 C -0.13 -1.80 10.05 -39.58 -0.40 -2.20 16 24 C -0.12 -1.90 10.05 -39.58 -0.40 -2.30 16 25 C -0.10 -1.73 9.41 -39.58 -0.37 -2.10 16 26 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.01 0.15 7.17 -51.93 -0.37 -0.22 16 28 H 0.07 1.89 6.86 -51.93 -0.36 1.53 16 29 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 30 H 0.33 6.24 7.77 -39.29 -0.31 5.94 16 31 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.08 1.04 7.47 -51.93 -0.39 0.65 16 33 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 34 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 35 H 0.12 1.77 7.59 -52.49 -0.40 1.37 16 36 H 0.12 1.31 8.06 -52.49 -0.42 0.89 16 37 H 0.12 1.33 8.06 -52.49 -0.42 0.90 16 38 H 0.12 1.73 8.06 -52.49 -0.42 1.30 16 39 H 0.13 2.55 7.92 -52.49 -0.42 2.13 16 LS Contribution 318.34 15.07 4.80 4.80 Total: -1.00 -28.48 318.34 -9.20 -37.68 By element: Atomic # 1 Polarization: 14.34 SS G_CDS: -5.87 Total: 8.47 kcal Atomic # 6 Polarization: -18.97 SS G_CDS: -2.81 Total: -21.78 kcal Atomic # 7 Polarization: -38.80 SS G_CDS: 0.07 Total: -38.73 kcal Atomic # 8 Polarization: -6.25 SS G_CDS: -0.36 Total: -6.61 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -28.48 -9.20 -37.68 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177045866.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.730 kcal (2) G-P(sol) polarization free energy of solvation -28.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.680 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds