Wall clock time and date at job start Mon Mar 30 2020 06:26:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.47202 * 2 1 4 4 C 1.50692 * 109.47446 * 239.99775 * 2 1 3 5 5 H 1.08005 * 120.00161 * 245.55571 * 4 2 1 6 6 C 1.37880 * 119.99914 * 65.54900 * 4 2 1 7 7 N 1.31508 * 120.00176 * 5.23609 * 6 4 2 8 8 Si 1.86805 * 119.99632 * 185.23399 * 6 4 2 9 9 H 1.48497 * 109.46976 * 95.00056 * 8 6 4 10 10 H 1.48503 * 109.46805 * 215.00018 * 8 6 4 11 11 H 1.48492 * 109.47385 * 334.99702 * 8 6 4 12 12 N 1.46905 * 109.47189 * 119.99370 * 2 1 3 13 13 C 1.46905 * 111.00108 * 279.42730 * 12 2 1 14 14 H 1.08999 * 110.43745 * 27.92952 * 13 12 2 15 15 C 1.54815 * 110.48633 * 150.47548 * 13 12 2 16 16 C 1.54990 * 102.09155 * 97.79561 * 15 13 12 17 17 O 1.44381 * 103.49196 * 37.01970 * 16 15 13 18 18 C 1.43737 * 106.97565 * 319.94219 * 17 16 15 19 19 H 1.09008 * 109.87644 * 267.08737 * 18 17 16 20 20 C 1.50696 * 109.87979 * 145.93845 * 18 17 16 21 21 C 1.38238 * 119.99919 * 326.89174 * 20 18 17 22 22 C 1.38242 * 119.99928 * 179.76884 * 21 20 18 23 23 C 1.38229 * 120.00079 * 0.50618 * 22 21 20 24 24 C 1.38241 * 119.99931 * 359.74728 * 23 22 21 25 25 C 1.38232 * 119.99933 * 359.97438 * 24 23 22 26 26 H 1.09000 * 109.46811 * 174.97060 * 1 2 3 27 27 H 1.08998 * 109.47284 * 294.96305 * 1 2 3 28 28 H 1.08997 * 109.47203 * 54.97274 * 1 2 3 29 29 H 0.96997 * 119.99909 * 180.02562 * 7 6 4 30 30 H 1.00901 * 110.99602 * 43.37940 * 12 2 1 31 31 H 1.08999 * 110.90183 * 215.99663 * 15 13 12 32 32 H 1.09000 * 110.90541 * 339.59509 * 15 13 12 33 33 H 1.09001 * 110.61629 * 155.52431 * 16 15 13 34 34 H 1.08999 * 110.61878 * 278.51930 * 16 15 13 35 35 H 1.08000 * 119.99547 * 359.97438 * 21 20 18 36 36 H 1.07999 * 119.99819 * 180.23039 * 22 21 20 37 37 H 1.07994 * 120.00297 * 179.72788 * 23 22 21 38 38 H 1.08001 * 119.99966 * 179.97438 * 24 23 22 39 39 H 1.07997 * 120.00177 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2303 5 1 2.5773 -1.6379 -1.1338 6 6 1.7963 -0.1764 -2.4794 7 7 1.2241 1.0022 -2.5933 8 14 2.2891 -1.1273 -4.0100 9 1 1.1234 -1.8997 -4.5096 10 1 2.7400 -0.1776 -5.0588 11 1 3.3958 -2.0602 -3.6782 12 7 2.0197 -0.6924 1.1995 13 6 1.9834 0.1938 2.3706 14 1 1.1983 0.9414 2.2580 15 6 1.7679 -0.6275 3.6651 16 6 3.2143 -0.7714 4.2030 17 8 3.8204 0.4996 3.8838 18 6 3.3519 0.8715 2.5768 19 1 4.0548 0.5255 1.8188 20 6 3.2002 2.3685 2.4936 21 6 2.8234 3.0882 3.6121 22 6 2.6888 4.4620 3.5370 23 6 2.9208 5.1149 2.3409 24 6 3.2925 4.3945 1.2210 25 6 3.4326 3.0215 1.2976 26 1 -0.3633 -1.0237 -0.0901 27 1 -0.3634 0.4337 0.9316 28 1 -0.3633 0.5898 -0.8415 29 1 1.0577 1.3776 -3.4720 30 1 1.4947 -1.5372 1.3690 31 1 1.1424 -0.0823 4.3720 32 1 1.3378 -1.6034 3.4396 33 1 3.2087 -0.9342 5.2807 34 1 3.7341 -1.5831 3.6939 35 1 2.6375 2.5775 4.5454 36 1 2.3981 5.0247 4.4118 37 1 2.8114 6.1876 2.2811 38 1 3.4733 4.9046 0.2864 39 1 3.7226 2.4586 0.4226 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000177045866.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:15 Heat of formation + Delta-G solvation = -38.990260 kcal Electronic energy + Delta-G solvation = -20060.185132 eV Core-core repulsion = 17159.558238 eV Total energy + Delta-G solvation = -2900.626894 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.15765 -39.33535 -37.37717 -34.57467 -32.92943 -32.20675 -31.74418 -29.55708 -27.72469 -27.18089 -24.26164 -23.35731 -22.49871 -22.22671 -21.35706 -18.48806 -18.06221 -17.12130 -16.87329 -16.52350 -16.42617 -15.79617 -15.47642 -15.07572 -14.98087 -14.38117 -14.20059 -14.05069 -13.88530 -13.65150 -13.17503 -13.13875 -12.83388 -12.64936 -12.48749 -12.29713 -12.15805 -12.05157 -11.85532 -11.77426 -11.57058 -11.01244 -10.70052 -10.48680 -9.79691 -9.61368 -9.05093 -8.11524 -6.19643 0.43058 0.52262 1.40892 1.42380 1.52881 2.43019 2.78940 3.03005 3.19310 3.50890 3.59227 3.97555 4.05360 4.08604 4.11704 4.21723 4.31380 4.45381 4.56533 4.64927 4.72364 4.75317 4.80482 4.89422 4.91274 4.93228 5.05893 5.07060 5.11166 5.20218 5.42790 5.57125 5.62317 5.65089 5.70851 5.74882 5.97767 6.13842 6.22739 6.61652 6.83278 6.94681 7.48925 8.96367 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.017841 B = 0.006941 C = 0.005577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1569.035299 B = 4033.109297 C = 5019.161575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.218 3.782 3 H 0.011 0.989 4 C -0.515 4.515 5 H 0.054 0.946 6 C 0.013 3.987 7 N -0.920 5.920 8 Si 0.954 3.046 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.270 1.270 12 N -0.676 5.676 13 C 0.066 3.934 14 H 0.040 0.960 15 C -0.149 4.149 16 C 0.050 3.950 17 O -0.383 6.383 18 C 0.133 3.867 19 H 0.057 0.943 20 C -0.098 4.098 21 C -0.107 4.107 22 C -0.124 4.124 23 C -0.122 4.122 24 C -0.130 4.130 25 C -0.126 4.126 26 H 0.038 0.962 27 H 0.026 0.974 28 H 0.043 0.957 29 H 0.260 0.740 30 H 0.337 0.663 31 H 0.092 0.908 32 H 0.096 0.904 33 H 0.120 0.880 34 H 0.061 0.939 35 H 0.134 0.866 36 H 0.154 0.846 37 H 0.151 0.849 38 H 0.129 0.871 39 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.941 2.899 13.890 14.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.110 3.890 3 H 0.029 0.971 4 C -0.554 4.554 5 H 0.073 0.927 6 C -0.186 4.186 7 N -0.560 5.560 8 Si 0.780 3.220 9 H -0.201 1.201 10 H -0.212 1.212 11 H -0.195 1.195 12 N -0.308 5.308 13 C -0.046 4.046 14 H 0.058 0.942 15 C -0.187 4.187 16 C -0.026 4.026 17 O -0.303 6.303 18 C 0.074 3.926 19 H 0.075 0.925 20 C -0.098 4.098 21 C -0.125 4.125 22 C -0.141 4.141 23 C -0.140 4.140 24 C -0.148 4.148 25 C -0.144 4.144 26 H 0.057 0.943 27 H 0.045 0.955 28 H 0.062 0.938 29 H 0.069 0.931 30 H 0.156 0.844 31 H 0.111 0.889 32 H 0.114 0.886 33 H 0.138 0.862 34 H 0.079 0.921 35 H 0.152 0.848 36 H 0.172 0.828 37 H 0.169 0.831 38 H 0.147 0.853 39 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 1.701 3.259 13.751 14.234 hybrid contribution -0.870 -0.491 -1.508 1.808 sum 0.831 2.768 12.243 12.580 Atomic orbital electron populations 1.22202 1.00425 0.99613 0.98750 1.18957 0.89483 0.93360 0.87228 0.97140 1.21394 1.34722 1.08115 0.91174 0.92737 1.25659 0.95577 0.95612 1.01746 1.70065 1.44626 1.17200 1.24097 0.85599 0.78502 0.78516 0.79335 1.20137 1.21218 1.19500 1.60696 1.60374 1.07329 1.02382 1.22742 0.94816 0.95173 0.91820 0.94221 1.23378 0.98652 1.01161 0.95506 1.23670 0.91174 0.85719 1.02055 1.88808 1.70105 1.38244 1.33112 1.21472 0.95344 0.90486 0.85294 0.92534 1.19928 1.00614 0.94709 0.94547 1.21132 0.98826 0.94689 0.97866 1.21501 0.99767 0.94014 0.98863 1.21484 0.98924 1.01144 0.92420 1.21319 1.00237 0.93368 0.99863 1.21052 1.00738 0.95656 0.96958 0.94298 0.95531 0.93774 0.93128 0.84370 0.88904 0.88562 0.86188 0.92098 0.84800 0.82848 0.83138 0.85272 0.88518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -7.12 8.95 71.98 0.64 -6.48 16 2 C 0.22 10.93 2.30 44.17 0.10 11.03 16 3 H 0.01 0.60 7.47 -2.39 -0.02 0.59 16 4 C -0.52 -28.47 8.77 25.60 0.22 -28.25 16 5 H 0.05 3.02 7.82 -2.91 -0.02 3.00 16 6 C 0.01 0.71 5.29 84.66 0.45 1.16 16 7 N -0.92 -53.40 12.00 21.45 0.26 -53.15 16 8 Si 0.95 44.15 29.54 68.60 2.03 46.18 16 9 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 10 H -0.29 -13.10 7.11 99.48 0.71 -12.39 16 11 H -0.27 -12.26 7.11 99.48 0.71 -11.56 16 12 N -0.68 -27.90 5.99 -468.24 -2.80 -30.71 16 13 C 0.07 2.33 2.75 45.90 0.13 2.45 16 14 H 0.04 1.57 6.46 -2.39 -0.02 1.55 16 15 C -0.15 -3.81 6.83 31.89 0.22 -3.60 16 16 C 0.05 1.24 7.72 72.66 0.56 1.80 16 17 O -0.38 -12.44 10.30 -148.98 -1.53 -13.97 16 18 C 0.13 4.90 3.44 30.22 0.10 5.00 16 19 H 0.06 2.45 7.87 -2.38 -0.02 2.43 16 20 C -0.10 -3.54 4.80 -19.87 -0.10 -3.64 16 21 C -0.11 -3.23 9.36 22.27 0.21 -3.03 16 22 C -0.12 -3.15 10.05 22.27 0.22 -2.92 16 23 C -0.12 -3.21 10.05 22.27 0.22 -2.99 16 24 C -0.13 -4.21 10.05 22.27 0.22 -3.99 16 25 C -0.13 -4.86 9.41 22.27 0.21 -4.65 16 26 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 27 H 0.03 1.11 7.17 -2.39 -0.02 1.10 16 28 H 0.04 2.33 6.86 -2.39 -0.02 2.31 16 29 H 0.26 14.40 8.31 -92.71 -0.77 13.63 16 30 H 0.34 12.69 7.77 -89.69 -0.70 11.99 16 31 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 32 H 0.10 2.19 7.47 -2.39 -0.02 2.17 16 33 H 0.12 2.18 8.14 -2.39 -0.02 2.16 16 34 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 35 H 0.13 3.61 7.59 -2.91 -0.02 3.59 16 36 H 0.15 2.75 8.06 -2.91 -0.02 2.72 16 37 H 0.15 2.89 8.06 -2.91 -0.02 2.87 16 38 H 0.13 3.80 8.06 -2.91 -0.02 3.78 16 39 H 0.10 4.26 7.92 -2.91 -0.02 4.24 16 Total: -1.00 -63.64 318.34 1.70 -61.94 By element: Atomic # 1 Polarization: 27.47 SS G_CDS: 0.33 Total: 27.80 kcal Atomic # 6 Polarization: -41.51 SS G_CDS: 3.42 Total: -38.09 kcal Atomic # 7 Polarization: -81.31 SS G_CDS: -2.55 Total: -83.86 kcal Atomic # 8 Polarization: -12.44 SS G_CDS: -1.53 Total: -13.97 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 2.03 Total: 46.18 kcal Total: -63.64 1.70 -61.94 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177045866.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.950 kcal (2) G-P(sol) polarization free energy of solvation -63.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds