Wall clock time and date at job start Mon Mar 30 2020 06:25:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35899 * 116.99584 * 2 1 4 4 C 1.38580 * 119.88843 * 0.02562 * 3 2 1 5 5 C 1.38126 * 119.76409 * 179.97438 * 4 3 2 6 6 C 1.38078 * 119.93521 * 0.10053 * 5 4 3 7 7 C 1.38738 * 120.49679 * 359.94934 * 6 5 4 8 8 C 1.37787 * 119.75171 * 359.89820 * 7 6 5 9 9 C 1.50708 * 121.68496 * 180.26825 * 8 7 6 10 10 C 1.52887 * 109.95351 * 343.16722 * 9 8 7 11 11 N 1.47167 * 108.50167 * 50.37587 * 10 9 8 12 12 C 1.46899 * 111.00152 * 165.31723 * 11 10 9 13 13 H 1.09001 * 109.46901 * 309.05462 * 12 11 10 14 14 C 1.53006 * 109.47163 * 69.05200 * 12 11 10 15 15 C 1.50698 * 109.47365 * 189.05449 * 12 11 10 16 16 H 1.08004 * 119.99528 * 359.97438 * 15 12 11 17 17 C 1.37876 * 120.00356 * 180.02562 * 15 12 11 18 18 N 1.31518 * 119.99554 * 359.97438 * 17 15 12 19 19 Si 1.86790 * 120.00086 * 179.97438 * 17 15 12 20 20 H 1.48502 * 109.47245 * 89.99579 * 19 17 15 21 21 H 1.48501 * 109.47356 * 209.99508 * 19 17 15 22 22 H 1.48499 * 109.47321 * 329.99647 * 19 17 15 23 23 C 1.46628 * 110.26221 * 288.74851 * 11 10 9 24 24 H 1.09000 * 109.47238 * 60.00386 * 1 2 3 25 25 H 1.09004 * 109.46991 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47103 * 299.99503 * 1 2 3 27 27 H 1.08005 * 120.11646 * 359.97438 * 4 3 2 28 28 H 1.07999 * 120.02993 * 180.02562 * 5 4 3 29 29 H 1.07995 * 119.75403 * 179.97438 * 6 5 4 30 30 H 1.09000 * 109.39217 * 103.30668 * 9 8 7 31 31 H 1.08997 * 109.39029 * 223.11148 * 9 8 7 32 32 H 1.09000 * 109.61993 * 290.68144 * 10 9 8 33 33 H 1.09002 * 109.64125 * 170.08721 * 10 9 8 34 34 H 1.09001 * 109.47002 * 59.99764 * 14 12 11 35 35 H 1.08993 * 109.46955 * 180.02562 * 14 12 11 36 36 H 1.09000 * 109.47050 * 300.00030 * 14 12 11 37 37 H 0.97005 * 119.99198 * 180.02562 * 18 17 15 38 38 H 1.08992 * 109.26573 * 172.72972 * 23 11 10 39 39 H 1.09000 * 109.26759 * 292.19878 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2888 2.3716 0.0005 5 6 1.9185 3.6010 0.0011 6 6 3.2976 3.6688 -0.0010 7 6 4.0595 2.5094 -0.0026 8 6 3.4353 1.2810 0.0000 9 6 4.2201 -0.0056 0.0044 10 6 5.6666 0.2640 -0.4108 11 7 6.1857 1.3767 0.4006 12 6 7.6492 1.4595 0.3055 13 1 8.0826 0.4806 0.5105 14 6 8.0443 1.9074 -1.1031 15 6 8.1624 2.4567 1.3121 16 1 7.4704 2.9772 1.9576 17 6 9.5151 2.7054 1.4084 18 7 10.3577 2.0718 0.6219 19 14 10.1511 3.9419 2.6556 20 1 10.4395 3.2490 3.9369 21 1 11.3950 4.5690 2.1411 22 1 9.1243 4.9910 2.8804 23 6 5.5602 2.6383 -0.0083 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 0.2102 2.3151 0.0005 28 1 1.3326 4.5083 0.0019 29 1 3.7868 4.6316 -0.0010 30 1 4.2053 -0.4351 1.0061 31 1 3.7685 -0.7073 -0.6968 32 1 5.7001 0.5338 -1.4664 33 1 6.2695 -0.6275 -0.2383 34 1 7.6109 2.8863 -1.3081 35 1 9.1303 1.9684 -1.1737 36 1 7.6732 1.1861 -1.8312 37 1 11.3094 2.2465 0.6899 38 1 5.8562 3.4271 0.6832 39 1 5.8953 2.8969 -1.0128 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000181266176.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:15 Heat of formation + Delta-G solvation = -24.608673 kcal Electronic energy + Delta-G solvation = -19877.105600 eV Core-core repulsion = 16977.102338 eV Total energy + Delta-G solvation = -2900.003262 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.47557 -39.64180 -37.83765 -35.34377 -33.57915 -32.23312 -30.57197 -29.24278 -28.04447 -27.32354 -25.78534 -24.28425 -22.74608 -22.08766 -20.00541 -18.72137 -18.22267 -17.30575 -16.84151 -16.62818 -16.49111 -16.19721 -15.53123 -15.38671 -14.75639 -14.50427 -14.37879 -14.04028 -13.79753 -13.54854 -13.05689 -12.91106 -12.87283 -12.69380 -12.59668 -12.54321 -12.20715 -12.10906 -12.08390 -11.86321 -11.63274 -11.25219 -10.88292 -10.48104 -9.54444 -9.06432 -8.82858 -8.09740 -6.20674 0.41103 0.52719 1.43687 1.44523 1.54784 2.42697 2.44405 2.80942 3.19266 3.33390 3.80931 3.84071 4.12520 4.19027 4.28451 4.42398 4.45223 4.48151 4.54958 4.57186 4.65608 4.74525 4.78075 4.81591 4.85382 4.90066 4.97873 5.06767 5.12993 5.30269 5.42025 5.48255 5.55493 5.68208 5.74358 5.80090 5.88837 6.19748 6.48958 6.53450 6.70249 6.91793 7.48622 8.96481 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.031784 B = 0.005120 C = 0.004738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 880.746245 B = 5467.922849 C = 5908.244180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.333 6.333 3 C 0.116 3.884 4 C -0.213 4.213 5 C -0.081 4.081 6 C -0.166 4.166 7 C -0.053 4.053 8 C -0.122 4.122 9 C -0.053 4.053 10 C 0.052 3.948 11 N -0.536 5.536 12 C 0.214 3.786 13 H 0.010 0.990 14 C -0.158 4.158 15 C -0.514 4.514 16 H 0.054 0.946 17 C 0.013 3.987 18 N -0.920 5.920 19 Si 0.959 3.041 20 H -0.278 1.278 21 H -0.283 1.283 22 H -0.269 1.269 23 C 0.103 3.897 24 H 0.066 0.934 25 H 0.117 0.883 26 H 0.064 0.936 27 H 0.156 0.844 28 H 0.156 0.844 29 H 0.131 0.869 30 H 0.069 0.931 31 H 0.085 0.915 32 H 0.027 0.973 33 H 0.069 0.931 34 H 0.034 0.966 35 H 0.064 0.936 36 H 0.023 0.977 37 H 0.261 0.739 38 H 0.075 0.925 39 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.757 -0.195 -3.023 19.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.247 6.247 3 C 0.071 3.929 4 C -0.231 4.231 5 C -0.098 4.098 6 C -0.184 4.184 7 C -0.053 4.053 8 C -0.123 4.123 9 C -0.090 4.090 10 C -0.077 4.077 11 N -0.260 5.260 12 C 0.107 3.893 13 H 0.028 0.972 14 C -0.217 4.217 15 C -0.552 4.552 16 H 0.072 0.928 17 C -0.185 4.185 18 N -0.560 5.560 19 Si 0.785 3.215 20 H -0.204 1.204 21 H -0.208 1.208 22 H -0.193 1.193 23 C -0.024 4.024 24 H 0.084 0.916 25 H 0.135 0.865 26 H 0.082 0.918 27 H 0.173 0.827 28 H 0.173 0.827 29 H 0.149 0.851 30 H 0.088 0.912 31 H 0.103 0.897 32 H 0.046 0.954 33 H 0.087 0.913 34 H 0.053 0.947 35 H 0.083 0.917 36 H 0.042 0.958 37 H 0.071 0.929 38 H 0.094 0.906 39 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -19.611 -0.508 -2.555 19.783 hybrid contribution 0.981 0.738 -0.265 1.256 sum -18.629 0.230 -2.820 18.843 Atomic orbital electron populations 1.23335 0.76544 1.05433 1.02227 1.86039 1.23331 1.26641 1.88652 1.18996 0.91239 0.85267 0.97404 1.21439 1.01024 0.91674 1.08990 1.21140 0.93670 0.98231 0.96794 1.21179 0.94756 0.97661 1.04837 1.19723 0.95056 0.92945 0.97583 1.19056 0.91148 0.95510 1.06619 1.20224 0.92681 0.94143 1.01955 1.22121 0.95879 0.94957 0.94703 1.62539 1.07116 1.03127 1.53202 1.19125 0.82193 0.95488 0.92521 0.97229 1.22209 1.03232 0.98186 0.98120 1.21328 0.92032 1.23134 1.18737 0.92769 1.25668 0.97024 0.98096 0.97757 1.70013 1.02779 1.43595 1.39640 0.85541 0.77681 0.79223 0.79088 1.20399 1.20842 1.19310 1.20787 0.89239 0.93513 0.98898 0.91582 0.86485 0.91784 0.82666 0.82684 0.85111 0.91215 0.89658 0.95450 0.91261 0.94693 0.91731 0.95808 0.92948 0.90646 0.94090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 9.81 113.37 1.11 1.38 16 2 O -0.33 -8.38 9.63 -92.41 -0.89 -9.27 16 3 C 0.12 3.31 6.65 22.56 0.15 3.46 16 4 C -0.21 -4.91 9.03 22.32 0.20 -4.71 16 5 C -0.08 -1.88 10.04 22.20 0.22 -1.66 16 6 C -0.17 -4.86 9.64 22.35 0.22 -4.65 16 7 C -0.05 -1.87 5.79 -19.87 -0.12 -1.98 16 8 C -0.12 -4.17 5.78 -19.76 -0.11 -4.29 16 9 C -0.05 -1.80 5.54 29.81 0.17 -1.63 16 10 C 0.05 2.01 4.99 86.21 0.43 2.44 16 11 N -0.54 -24.32 4.63 -880.31 -4.08 -28.40 16 12 C 0.21 11.15 2.31 44.17 0.10 11.25 16 13 H 0.01 0.56 7.91 -2.39 -0.02 0.55 16 14 C -0.16 -7.84 8.22 71.98 0.59 -7.25 16 15 C -0.51 -28.77 8.02 25.60 0.21 -28.56 16 16 H 0.05 3.06 7.09 -2.91 -0.02 3.04 16 17 C 0.01 0.73 5.30 84.65 0.45 1.17 16 18 N -0.92 -53.26 11.32 21.45 0.24 -53.02 16 19 Si 0.96 44.16 29.54 68.60 2.03 46.19 16 20 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 21 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 22 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 23 C 0.10 4.28 4.55 85.59 0.39 4.67 16 24 H 0.07 0.78 7.65 -2.39 -0.02 0.76 16 25 H 0.12 1.19 8.14 -2.39 -0.02 1.17 16 26 H 0.06 0.79 7.65 -2.39 -0.02 0.77 16 27 H 0.16 2.47 6.28 -2.91 -0.02 2.45 16 28 H 0.16 2.49 8.06 -2.91 -0.02 2.47 16 29 H 0.13 3.48 8.06 -2.91 -0.02 3.45 16 30 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 31 H 0.09 2.57 7.85 -2.39 -0.02 2.56 16 32 H 0.03 1.06 7.23 -2.39 -0.02 1.04 16 33 H 0.07 2.68 7.87 -2.39 -0.02 2.66 16 34 H 0.03 1.66 6.23 -2.39 -0.01 1.65 16 35 H 0.06 3.53 6.07 -2.39 -0.01 3.52 16 36 H 0.02 1.05 7.01 -2.39 -0.02 1.04 16 37 H 0.26 14.39 8.31 -92.70 -0.77 13.61 16 38 H 0.08 3.33 6.94 -2.39 -0.02 3.31 16 39 H 0.04 1.73 5.93 -2.39 -0.01 1.72 16 Total: -1.00 -64.26 304.54 2.35 -61.91 By element: Atomic # 1 Polarization: 11.90 SS G_CDS: 1.04 Total: 12.94 kcal Atomic # 6 Polarization: -34.35 SS G_CDS: 4.01 Total: -30.35 kcal Atomic # 7 Polarization: -77.58 SS G_CDS: -3.83 Total: -81.42 kcal Atomic # 8 Polarization: -8.38 SS G_CDS: -0.89 Total: -9.27 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 2.03 Total: 46.19 kcal Total: -64.26 2.35 -61.91 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000181266176.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.303 kcal (2) G-P(sol) polarization free energy of solvation -64.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds