Wall clock time and date at job start Mon Mar 30 2020 06:25:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35904 * 116.99705 * 2 1 4 4 C 1.38578 * 119.88383 * 0.02562 * 3 2 1 5 5 C 1.38131 * 119.76465 * 179.97438 * 4 3 2 6 6 C 1.38086 * 119.92596 * 0.24411 * 5 4 3 7 7 C 1.38731 * 120.50034 * 359.65801 * 6 5 4 8 8 C 1.37785 * 119.75684 * 0.21196 * 7 6 5 9 9 C 1.50703 * 121.68696 * 180.08153 * 8 7 6 10 10 C 1.52903 * 109.95200 * 343.12215 * 9 8 7 11 11 N 1.47165 * 108.48648 * 50.39583 * 10 9 8 12 12 C 1.46898 * 110.99626 * 165.31125 * 11 10 9 13 13 H 1.09000 * 109.47445 * 60.00024 * 12 11 10 14 14 C 1.53002 * 109.47443 * 299.99676 * 12 11 10 15 15 C 1.50706 * 109.46935 * 180.02562 * 12 11 10 16 16 H 1.07999 * 119.99935 * 359.97438 * 15 12 11 17 17 C 1.37876 * 120.00038 * 179.97438 * 15 12 11 18 18 N 1.31515 * 120.00137 * 0.02562 * 17 15 12 19 19 Si 1.86793 * 119.99980 * 179.97438 * 17 15 12 20 20 H 1.48500 * 109.47478 * 0.02562 * 19 17 15 21 21 H 1.48509 * 109.47159 * 120.00086 * 19 17 15 22 22 H 1.48504 * 109.47411 * 240.00139 * 19 17 15 23 23 C 1.46622 * 110.26562 * 288.74099 * 11 10 9 24 24 H 1.09001 * 109.47212 * 60.00150 * 1 2 3 25 25 H 1.09008 * 109.47106 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47343 * 299.99960 * 1 2 3 27 27 H 1.07999 * 120.11646 * 359.97438 * 4 3 2 28 28 H 1.08000 * 120.03500 * 180.09030 * 5 4 3 29 29 H 1.08003 * 119.74425 * 180.02562 * 6 5 4 30 30 H 1.09002 * 109.38968 * 103.26663 * 9 8 7 31 31 H 1.09001 * 109.39093 * 223.06822 * 9 8 7 32 32 H 1.08997 * 109.63541 * 170.09923 * 10 9 8 33 33 H 1.09003 * 109.62964 * 290.69670 * 10 9 8 34 34 H 1.09000 * 109.47085 * 300.00569 * 14 12 11 35 35 H 1.09000 * 109.46665 * 60.00135 * 14 12 11 36 36 H 1.08998 * 109.47548 * 180.02562 * 14 12 11 37 37 H 0.96996 * 120.00388 * 179.97438 * 18 17 15 38 38 H 1.08997 * 109.26879 * 292.21181 * 23 11 10 39 39 H 1.09005 * 109.26736 * 172.74102 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2888 2.3716 0.0005 5 6 1.9184 3.6011 0.0011 6 6 3.2975 3.6688 -0.0040 7 6 4.0594 2.5094 -0.0026 8 6 3.4354 1.2810 -0.0004 9 6 4.2201 -0.0056 0.0031 10 6 5.6663 0.2642 -0.4136 11 7 6.1860 1.3765 0.3979 12 6 7.6494 1.4594 0.3017 13 1 7.9367 1.6208 -0.7373 14 6 8.2685 0.1539 0.8051 15 6 8.1440 2.6068 1.1443 16 1 7.4414 3.2140 1.6957 17 6 9.4935 2.8815 1.2112 18 7 10.3491 2.1424 0.5393 19 14 10.1065 4.3041 2.2549 20 1 8.9519 4.9744 2.9053 21 1 11.0316 3.7909 3.2971 22 1 10.8233 5.2779 1.3928 23 6 5.5602 2.6382 -0.0098 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 0.2103 2.3150 0.0005 28 1 1.3325 4.5084 0.0030 29 1 3.7868 4.6316 -0.0032 30 1 4.2063 -0.4352 1.0047 31 1 3.7679 -0.7072 -0.6979 32 1 6.2693 -0.6274 -0.2420 33 1 5.6990 0.5344 -1.4691 34 1 7.9812 -0.0076 1.8440 35 1 7.9108 -0.6763 0.1960 36 1 9.3544 0.2155 0.7341 37 1 11.2984 2.3359 0.5860 38 1 5.8943 2.8973 -1.0144 39 1 5.8569 3.4268 0.6819 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000181266188.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:17 Heat of formation + Delta-G solvation = -6.995190 kcal Electronic energy + Delta-G solvation = -19820.920180 eV Core-core repulsion = 16921.680696 eV Total energy + Delta-G solvation = -2899.239484 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.28159 -38.21803 -36.42280 -33.58011 -31.88666 -31.01892 -29.00332 -28.22150 -27.16473 -25.28149 -23.78945 -22.85583 -21.57967 -20.11062 -18.79521 -17.50894 -16.41106 -16.16941 -15.73888 -15.33242 -15.00940 -14.60036 -14.01725 -13.73565 -13.45858 -13.20567 -12.96935 -12.65755 -12.26045 -11.97008 -11.71591 -11.67741 -11.28968 -11.18788 -11.01509 -10.88005 -10.67085 -10.51370 -10.17796 -10.08497 -10.07656 -9.62617 -8.83571 -8.44202 -8.27703 -7.90475 -7.16039 -6.00582 -4.05265 1.58957 1.67154 3.30424 3.35398 3.38520 3.42974 3.97723 4.41609 4.88638 4.91791 4.99981 5.06771 5.09859 5.31397 5.32512 5.35912 5.52617 5.54155 5.77479 5.87141 5.94187 6.01966 6.25701 6.30755 6.37016 6.53127 6.58732 6.64025 6.67289 6.88019 6.97834 7.00776 7.09510 7.15045 7.53955 7.56011 7.72432 7.84181 8.21456 8.33430 8.59672 9.01524 9.60140 11.06229 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.030847 B = 0.005235 C = 0.004634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 907.499888 B = 5347.364050 C = 6041.387810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.315 6.315 3 C 0.119 3.881 4 C -0.221 4.221 5 C -0.089 4.089 6 C -0.155 4.155 7 C -0.028 4.028 8 C -0.095 4.095 9 C -0.062 4.062 10 C 0.044 3.956 11 N -0.527 5.527 12 C 0.210 3.790 13 H -0.001 1.001 14 C -0.133 4.133 15 C -0.504 4.504 16 H 0.064 0.936 17 C 0.060 3.940 18 N -0.893 5.893 19 Si 0.895 3.105 20 H -0.273 1.273 21 H -0.284 1.284 22 H -0.285 1.285 23 C 0.100 3.900 24 H 0.051 0.949 25 H 0.096 0.904 26 H 0.052 0.948 27 H 0.121 0.879 28 H 0.119 0.881 29 H 0.122 0.878 30 H 0.077 0.923 31 H 0.069 0.931 32 H 0.081 0.919 33 H 0.024 0.976 34 H 0.035 0.965 35 H 0.010 0.990 36 H 0.085 0.915 37 H 0.260 0.740 38 H 0.041 0.959 39 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.910 -1.627 -2.423 17.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.229 6.229 3 C 0.074 3.926 4 C -0.239 4.239 5 C -0.108 4.108 6 C -0.173 4.173 7 C -0.029 4.029 8 C -0.096 4.096 9 C -0.100 4.100 10 C -0.084 4.084 11 N -0.252 5.252 12 C 0.105 3.895 13 H 0.017 0.983 14 C -0.191 4.191 15 C -0.542 4.542 16 H 0.082 0.918 17 C -0.142 4.142 18 N -0.532 5.532 19 Si 0.723 3.277 20 H -0.197 1.197 21 H -0.210 1.210 22 H -0.212 1.212 23 C -0.028 4.028 24 H 0.070 0.930 25 H 0.114 0.886 26 H 0.071 0.929 27 H 0.139 0.861 28 H 0.137 0.863 29 H 0.140 0.860 30 H 0.096 0.904 31 H 0.087 0.913 32 H 0.100 0.900 33 H 0.042 0.958 34 H 0.054 0.946 35 H 0.029 0.971 36 H 0.104 0.896 37 H 0.070 0.930 38 H 0.059 0.941 39 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -16.729 -1.930 -1.956 16.953 hybrid contribution 0.239 1.136 -0.274 1.192 sum -16.490 -0.795 -2.230 16.660 Atomic orbital electron populations 1.22982 0.79132 1.03446 1.01027 1.86062 1.20676 1.27215 1.88926 1.18952 0.91803 0.83912 0.97899 1.21025 0.99331 0.92546 1.11026 1.20737 0.94467 0.96654 0.98906 1.21002 0.93585 0.98161 1.04590 1.19856 0.96581 0.91457 0.94978 1.18996 0.89698 0.96046 1.04832 1.20342 0.94193 0.93367 1.02079 1.22206 0.94609 0.96928 0.94700 1.62444 1.09074 1.01374 1.52283 1.19287 0.79891 0.95008 0.95356 0.98296 1.21853 1.03701 0.95069 0.98445 1.21186 0.91935 1.12948 1.28166 0.91835 1.24925 0.96825 0.96661 0.95752 1.69900 1.02284 1.38992 1.42026 0.86481 0.78823 0.82218 0.80139 1.19716 1.21036 1.21161 1.20888 0.87159 0.95091 0.99641 0.93019 0.88603 0.92943 0.86100 0.86271 0.85952 0.90434 0.91285 0.90041 0.95785 0.94592 0.97125 0.89595 0.93042 0.94078 0.88341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 9.81 101.05 0.99 1.26 16 2 O -0.32 -4.38 9.63 -19.44 -0.19 -4.57 16 3 C 0.12 1.84 6.65 -39.13 -0.26 1.58 16 4 C -0.22 -2.97 9.03 -39.50 -0.36 -3.33 16 5 C -0.09 -1.21 10.04 -39.68 -0.40 -1.60 16 6 C -0.15 -2.39 9.64 -39.46 -0.38 -2.77 16 7 C -0.03 -0.51 5.79 -104.64 -0.61 -1.11 16 8 C -0.09 -1.66 5.78 -104.46 -0.60 -2.26 16 9 C -0.06 -1.07 5.54 -27.93 -0.15 -1.22 16 10 C 0.04 0.85 5.42 -3.73 -0.02 0.83 16 11 N -0.53 -11.65 4.54 -229.58 -1.04 -12.69 16 12 C 0.21 5.33 2.04 -68.86 -0.14 5.18 16 13 H 0.00 -0.02 8.14 -51.93 -0.42 -0.44 16 14 C -0.13 -3.25 8.79 37.16 0.33 -2.92 16 15 C -0.50 -13.70 7.97 -34.44 -0.27 -13.98 16 16 H 0.06 1.73 6.46 -52.49 -0.34 1.39 16 17 C 0.06 1.63 5.30 -17.82 -0.09 1.54 16 18 N -0.89 -25.32 11.32 55.43 0.63 -24.69 16 19 Si 0.90 21.23 29.54 -169.99 -5.02 16.21 16 20 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 21 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 22 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 23 C 0.10 2.04 4.82 -5.16 -0.02 2.01 16 24 H 0.05 0.41 7.65 -51.93 -0.40 0.02 16 25 H 0.10 0.66 8.14 -51.92 -0.42 0.24 16 26 H 0.05 0.43 7.65 -51.93 -0.40 0.03 16 27 H 0.12 1.28 6.28 -52.49 -0.33 0.95 16 28 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 29 H 0.12 1.70 8.06 -52.48 -0.42 1.28 16 30 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 31 H 0.07 1.07 7.85 -51.93 -0.41 0.66 16 32 H 0.08 1.54 5.69 -51.93 -0.30 1.24 16 33 H 0.02 0.46 8.05 -51.93 -0.42 0.04 16 34 H 0.03 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.01 0.22 6.12 -51.93 -0.32 -0.10 16 36 H 0.09 2.29 6.07 -51.93 -0.32 1.98 16 37 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 38 H 0.04 0.85 8.13 -51.93 -0.42 0.43 16 39 H 0.10 2.10 6.40 -51.93 -0.33 1.76 16 LS Contribution 306.33 15.07 4.62 4.62 Total: -1.00 -29.53 306.33 -8.65 -38.18 By element: Atomic # 1 Polarization: 5.39 SS G_CDS: -5.64 Total: -0.25 kcal Atomic # 6 Polarization: -14.81 SS G_CDS: -2.00 Total: -16.80 kcal Atomic # 7 Polarization: -36.96 SS G_CDS: -0.41 Total: -37.38 kcal Atomic # 8 Polarization: -4.38 SS G_CDS: -0.19 Total: -4.57 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -29.53 -8.65 -38.18 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000181266188.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.185 kcal (2) G-P(sol) polarization free energy of solvation -29.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.180 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds