Wall clock time and date at job start Mon Mar 30 2020 06:25:16
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42900 * 1
3 3 C 1.35904 * 116.99705 * 2 1
4 4 C 1.38578 * 119.88383 * 0.02562 * 3 2 1
5 5 C 1.38131 * 119.76465 * 179.97438 * 4 3 2
6 6 C 1.38086 * 119.92596 * 0.24411 * 5 4 3
7 7 C 1.38731 * 120.50034 * 359.65801 * 6 5 4
8 8 C 1.37785 * 119.75684 * 0.21196 * 7 6 5
9 9 C 1.50703 * 121.68696 * 180.08153 * 8 7 6
10 10 C 1.52903 * 109.95200 * 343.12215 * 9 8 7
11 11 N 1.47165 * 108.48648 * 50.39583 * 10 9 8
12 12 C 1.46898 * 110.99626 * 165.31125 * 11 10 9
13 13 H 1.09000 * 109.47445 * 60.00024 * 12 11 10
14 14 C 1.53002 * 109.47443 * 299.99676 * 12 11 10
15 15 C 1.50706 * 109.46935 * 180.02562 * 12 11 10
16 16 H 1.07999 * 119.99935 * 359.97438 * 15 12 11
17 17 C 1.37876 * 120.00038 * 179.97438 * 15 12 11
18 18 N 1.31515 * 120.00137 * 0.02562 * 17 15 12
19 19 Si 1.86793 * 119.99980 * 179.97438 * 17 15 12
20 20 H 1.48500 * 109.47478 * 0.02562 * 19 17 15
21 21 H 1.48509 * 109.47159 * 120.00086 * 19 17 15
22 22 H 1.48504 * 109.47411 * 240.00139 * 19 17 15
23 23 C 1.46622 * 110.26562 * 288.74099 * 11 10 9
24 24 H 1.09001 * 109.47212 * 60.00150 * 1 2 3
25 25 H 1.09008 * 109.47106 * 180.02562 * 1 2 3
26 26 H 1.09000 * 109.47343 * 299.99960 * 1 2 3
27 27 H 1.07999 * 120.11646 * 359.97438 * 4 3 2
28 28 H 1.08000 * 120.03500 * 180.09030 * 5 4 3
29 29 H 1.08003 * 119.74425 * 180.02562 * 6 5 4
30 30 H 1.09002 * 109.38968 * 103.26663 * 9 8 7
31 31 H 1.09001 * 109.39093 * 223.06822 * 9 8 7
32 32 H 1.08997 * 109.63541 * 170.09923 * 10 9 8
33 33 H 1.09003 * 109.62964 * 290.69670 * 10 9 8
34 34 H 1.09000 * 109.47085 * 300.00569 * 14 12 11
35 35 H 1.09000 * 109.46665 * 60.00135 * 14 12 11
36 36 H 1.08998 * 109.47548 * 180.02562 * 14 12 11
37 37 H 0.96996 * 120.00388 * 179.97438 * 18 17 15
38 38 H 1.08997 * 109.26879 * 292.21181 * 23 11 10
39 39 H 1.09005 * 109.26736 * 172.74102 * 23 11 10
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0459 1.2109 0.0000
4 6 1.2888 2.3716 0.0005
5 6 1.9184 3.6011 0.0011
6 6 3.2975 3.6688 -0.0040
7 6 4.0594 2.5094 -0.0026
8 6 3.4354 1.2810 -0.0004
9 6 4.2201 -0.0056 0.0031
10 6 5.6663 0.2642 -0.4136
11 7 6.1860 1.3765 0.3979
12 6 7.6494 1.4594 0.3017
13 1 7.9367 1.6208 -0.7373
14 6 8.2685 0.1539 0.8051
15 6 8.1440 2.6068 1.1443
16 1 7.4414 3.2140 1.6957
17 6 9.4935 2.8815 1.2112
18 7 10.3491 2.1424 0.5393
19 14 10.1065 4.3041 2.2549
20 1 8.9519 4.9744 2.9053
21 1 11.0316 3.7909 3.2971
22 1 10.8233 5.2779 1.3928
23 6 5.5602 2.6382 -0.0098
24 1 -0.3634 0.5138 -0.8900
25 1 -0.3634 -1.0277 0.0005
26 1 -0.3634 0.5138 0.8900
27 1 0.2103 2.3150 0.0005
28 1 1.3325 4.5084 0.0030
29 1 3.7868 4.6316 -0.0032
30 1 4.2063 -0.4352 1.0047
31 1 3.7679 -0.7072 -0.6979
32 1 6.2693 -0.6274 -0.2420
33 1 5.6990 0.5344 -1.4691
34 1 7.9812 -0.0076 1.8440
35 1 7.9108 -0.6763 0.1960
36 1 9.3544 0.2155 0.7341
37 1 11.2984 2.3359 0.5860
38 1 5.8943 2.8973 -1.0144
39 1 5.8569 3.4268 0.6819
RHF calculation, no. of doubly occupied orbitals= 49
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000181266188.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 06:25:16
Heat of formation + Delta-G solvation = -24.713864 kcal
Electronic energy + Delta-G solvation = -19821.688519 eV
Core-core repulsion = 16921.680696 eV
Total energy + Delta-G solvation = -2900.007823 eV
No. of doubly occupied orbitals = 49
Molecular weight
(most abundant/longest-lived isotopes) = 261.147 amu
Computer time = 0.43 seconds
Orbital eigenvalues (eV)
-41.45943 -39.55310 -37.80457 -35.36119 -33.49957 -32.47621 -30.48849 -29.70498
-28.03292 -27.29217 -25.32036 -24.33187 -22.79975 -21.79534 -20.30488 -18.64491
-18.33871 -17.55915 -16.73079 -16.66097 -16.50045 -16.03615 -15.70895 -15.29397
-14.85640 -14.50370 -14.42509 -14.20605 -13.58105 -13.45400 -13.21234 -13.02349
-12.86133 -12.60944 -12.50336 -12.43330 -12.25845 -12.11286 -11.96230 -11.85833
-11.73221 -11.19050 -10.83774 -10.51331 -9.56354 -9.09206 -8.89945 -8.11309
-6.23298 0.39966 0.51948 1.41586 1.43582 1.55435 2.42009 2.43106
2.79925 3.15819 3.30585 3.79982 3.83135 4.11837 4.17701 4.27505
4.42143 4.45384 4.49894 4.53578 4.56973 4.66027 4.69421 4.78038
4.82917 4.87173 4.96481 5.05198 5.08134 5.18259 5.28241 5.41464
5.47317 5.54334 5.71761 5.73694 5.78230 5.86376 6.24829 6.39458
6.52969 6.69121 6.90596 7.46041 8.95093
Molecular weight = 261.15amu
Principal moments of inertia in cm(-1)
A = 0.030847 B = 0.005235 C = 0.004634
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 907.499888 B = 5347.364050 C = 6041.387810
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.019 3.981
2 O -0.332 6.332
3 C 0.117 3.883
4 C -0.212 4.212
5 C -0.080 4.080
6 C -0.165 4.165
7 C -0.053 4.053
8 C -0.122 4.122
9 C -0.052 4.052
10 C 0.045 3.955
11 N -0.534 5.534
12 C 0.214 3.786
13 H -0.036 1.036
14 C -0.121 4.121
15 C -0.519 4.519
16 H 0.058 0.942
17 C 0.013 3.987
18 N -0.920 5.920
19 Si 0.960 3.040
20 H -0.268 1.268
21 H -0.280 1.280
22 H -0.280 1.280
23 C 0.107 3.893
24 H 0.065 0.935
25 H 0.117 0.883
26 H 0.064 0.936
27 H 0.157 0.843
28 H 0.156 0.844
29 H 0.131 0.869
30 H 0.072 0.928
31 H 0.085 0.915
32 H 0.081 0.919
33 H 0.019 0.981
34 H 0.031 0.969
35 H 0.033 0.967
36 H 0.062 0.938
37 H 0.262 0.738
38 H 0.026 0.974
39 H 0.080 0.920
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -19.696 -1.094 -1.996 19.827
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.076 4.076
2 O -0.246 6.246
3 C 0.071 3.929
4 C -0.230 4.230
5 C -0.098 4.098
6 C -0.184 4.184
7 C -0.053 4.053
8 C -0.123 4.123
9 C -0.089 4.089
10 C -0.083 4.083
11 N -0.259 5.259
12 C 0.108 3.892
13 H -0.018 1.018
14 C -0.179 4.179
15 C -0.557 4.557
16 H 0.076 0.924
17 C -0.186 4.186
18 N -0.560 5.560
19 Si 0.786 3.214
20 H -0.192 1.192
21 H -0.206 1.206
22 H -0.206 1.206
23 C -0.021 4.021
24 H 0.084 0.916
25 H 0.135 0.865
26 H 0.082 0.918
27 H 0.174 0.826
28 H 0.174 0.826
29 H 0.149 0.851
30 H 0.090 0.910
31 H 0.104 0.896
32 H 0.100 0.900
33 H 0.038 0.962
34 H 0.050 0.950
35 H 0.052 0.948
36 H 0.081 0.919
37 H 0.071 0.929
38 H 0.043 0.957
39 H 0.098 0.902
Dipole moment (debyes) X Y Z Total
from point charges -19.543 -1.407 -1.531 19.653
hybrid contribution 0.967 0.929 -0.449 1.414
sum -18.576 -0.478 -1.980 18.687
Atomic orbital electron populations
1.23339 0.76525 1.05454 1.02235 1.86039 1.23342 1.26592 1.88643
1.18984 0.91196 0.85291 0.97391 1.21448 1.01052 0.91653 1.08887
1.21145 0.93609 0.98272 0.96786 1.21180 0.94791 0.97631 1.04791
1.19686 0.94834 0.93046 0.97779 1.19067 0.91199 0.95520 1.06526
1.20221 0.92535 0.94091 1.02053 1.22254 0.96194 0.95724 0.94106
1.62383 1.07154 1.03022 1.53323 1.19101 0.82186 0.94969 0.92980
1.01831 1.21672 1.02081 0.95630 0.98518 1.21415 0.92267 1.13657
1.28404 0.92412 1.25698 0.96939 0.99080 0.96855 1.70021 1.02535
1.40341 1.43057 0.85471 0.78238 0.79181 0.78535 1.19205 1.20577
1.20579 1.20724 0.89464 0.93758 0.98119 0.91591 0.86454 0.91763
0.82596 0.82634 0.85148 0.90995 0.89626 0.90036 0.96226 0.94985
0.94830 0.91908 0.92889 0.95659 0.90166
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.02 0.27 9.81 113.37 1.11 1.38 16
2 O -0.33 -8.35 9.63 -92.47 -0.89 -9.24 16
3 C 0.12 3.33 6.65 22.56 0.15 3.48 16
4 C -0.21 -4.90 9.03 22.33 0.20 -4.70 16
5 C -0.08 -1.89 10.04 22.21 0.22 -1.66 16
6 C -0.17 -4.92 9.64 22.35 0.22 -4.70 16
7 C -0.05 -1.91 5.79 -19.88 -0.12 -2.03 16
8 C -0.12 -4.19 5.78 -19.76 -0.11 -4.31 16
9 C -0.05 -1.76 5.54 29.82 0.17 -1.60 16
10 C 0.05 1.78 5.42 86.22 0.47 2.25 16
11 N -0.53 -24.50 4.54 -880.27 -3.99 -28.49 16
12 C 0.21 11.33 2.04 44.17 0.09 11.42 16
13 H -0.04 -2.10 8.14 -2.39 -0.02 -2.12 16
14 C -0.12 -6.10 8.79 71.98 0.63 -5.47 16
15 C -0.52 -29.16 7.97 25.60 0.20 -28.96 16
16 H 0.06 3.24 6.46 -2.91 -0.02 3.22 16
17 C 0.01 0.72 5.30 84.65 0.45 1.17 16
18 N -0.92 -53.45 11.32 21.45 0.24 -53.21 16
19 Si 0.96 44.13 29.54 68.60 2.03 46.15 16
20 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16
21 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16
22 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16
23 C 0.11 4.57 4.82 85.59 0.41 4.98 16
24 H 0.07 0.77 7.65 -2.39 -0.02 0.76 16
25 H 0.12 1.17 8.14 -2.38 -0.02 1.16 16
26 H 0.06 0.79 7.65 -2.39 -0.02 0.77 16
27 H 0.16 2.47 6.28 -2.91 -0.02 2.45 16
28 H 0.16 2.52 8.06 -2.91 -0.02 2.49 16
29 H 0.13 3.53 8.06 -2.91 -0.02 3.51 16
30 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16
31 H 0.09 2.58 7.85 -2.39 -0.02 2.56 16
32 H 0.08 3.13 5.69 -2.39 -0.01 3.12 16
33 H 0.02 0.78 8.05 -2.39 -0.02 0.76 16
34 H 0.03 1.58 8.14 -2.39 -0.02 1.56 16
35 H 0.03 1.48 6.12 -2.39 -0.01 1.47 16
36 H 0.06 3.46 6.07 -2.39 -0.01 3.44 16
37 H 0.26 14.40 8.31 -92.71 -0.77 13.63 16
38 H 0.03 1.13 8.13 -2.39 -0.02 1.11 16
39 H 0.08 3.60 6.40 -2.38 -0.02 3.59 16
Total: -1.00 -65.13 306.33 2.52 -62.62
By element:
Atomic # 1 Polarization: 9.88 SS G_CDS: 1.04 Total: 10.91 kcal
Atomic # 6 Polarization: -32.84 SS G_CDS: 4.09 Total: -28.75 kcal
Atomic # 7 Polarization: -77.95 SS G_CDS: -3.75 Total: -81.70 kcal
Atomic # 8 Polarization: -8.35 SS G_CDS: -0.89 Total: -9.24 kcal
Atomic # 14 Polarization: 44.13 SS G_CDS: 2.03 Total: 46.15 kcal
Total: -65.13 2.52 -62.62 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000181266188.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 37.905 kcal
(2) G-P(sol) polarization free energy of solvation -65.134 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.229 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.515 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.619 kcal
(6) G-S(sol) free energy of system = (1) + (5) -24.714 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.43 seconds