Wall clock time and date at job start Mon Mar 30 2020 06:25:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35904 * 116.99705 * 2 1 4 4 C 1.38578 * 119.88383 * 0.02562 * 3 2 1 5 5 C 1.38131 * 119.76465 * 179.97438 * 4 3 2 6 6 C 1.38086 * 119.92596 * 0.24411 * 5 4 3 7 7 C 1.38731 * 120.50034 * 359.65801 * 6 5 4 8 8 C 1.37785 * 119.75684 * 0.21196 * 7 6 5 9 9 C 1.50703 * 121.68696 * 180.08153 * 8 7 6 10 10 C 1.52903 * 109.95200 * 343.12215 * 9 8 7 11 11 N 1.47165 * 108.48648 * 50.39583 * 10 9 8 12 12 C 1.46898 * 110.99626 * 165.31125 * 11 10 9 13 13 H 1.09000 * 109.47445 * 60.00024 * 12 11 10 14 14 C 1.53002 * 109.47443 * 299.99676 * 12 11 10 15 15 C 1.50706 * 109.46935 * 180.02562 * 12 11 10 16 16 H 1.07999 * 119.99935 * 359.97438 * 15 12 11 17 17 C 1.37876 * 120.00038 * 179.97438 * 15 12 11 18 18 N 1.31515 * 120.00137 * 0.02562 * 17 15 12 19 19 Si 1.86793 * 119.99980 * 179.97438 * 17 15 12 20 20 H 1.48500 * 109.47478 * 0.02562 * 19 17 15 21 21 H 1.48509 * 109.47159 * 120.00086 * 19 17 15 22 22 H 1.48504 * 109.47411 * 240.00139 * 19 17 15 23 23 C 1.46622 * 110.26562 * 288.74099 * 11 10 9 24 24 H 1.09001 * 109.47212 * 60.00150 * 1 2 3 25 25 H 1.09008 * 109.47106 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47343 * 299.99960 * 1 2 3 27 27 H 1.07999 * 120.11646 * 359.97438 * 4 3 2 28 28 H 1.08000 * 120.03500 * 180.09030 * 5 4 3 29 29 H 1.08003 * 119.74425 * 180.02562 * 6 5 4 30 30 H 1.09002 * 109.38968 * 103.26663 * 9 8 7 31 31 H 1.09001 * 109.39093 * 223.06822 * 9 8 7 32 32 H 1.08997 * 109.63541 * 170.09923 * 10 9 8 33 33 H 1.09003 * 109.62964 * 290.69670 * 10 9 8 34 34 H 1.09000 * 109.47085 * 300.00569 * 14 12 11 35 35 H 1.09000 * 109.46665 * 60.00135 * 14 12 11 36 36 H 1.08998 * 109.47548 * 180.02562 * 14 12 11 37 37 H 0.96996 * 120.00388 * 179.97438 * 18 17 15 38 38 H 1.08997 * 109.26879 * 292.21181 * 23 11 10 39 39 H 1.09005 * 109.26736 * 172.74102 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2888 2.3716 0.0005 5 6 1.9184 3.6011 0.0011 6 6 3.2975 3.6688 -0.0040 7 6 4.0594 2.5094 -0.0026 8 6 3.4354 1.2810 -0.0004 9 6 4.2201 -0.0056 0.0031 10 6 5.6663 0.2642 -0.4136 11 7 6.1860 1.3765 0.3979 12 6 7.6494 1.4594 0.3017 13 1 7.9367 1.6208 -0.7373 14 6 8.2685 0.1539 0.8051 15 6 8.1440 2.6068 1.1443 16 1 7.4414 3.2140 1.6957 17 6 9.4935 2.8815 1.2112 18 7 10.3491 2.1424 0.5393 19 14 10.1065 4.3041 2.2549 20 1 8.9519 4.9744 2.9053 21 1 11.0316 3.7909 3.2971 22 1 10.8233 5.2779 1.3928 23 6 5.5602 2.6382 -0.0098 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 0.2103 2.3150 0.0005 28 1 1.3325 4.5084 0.0030 29 1 3.7868 4.6316 -0.0032 30 1 4.2063 -0.4352 1.0047 31 1 3.7679 -0.7072 -0.6979 32 1 6.2693 -0.6274 -0.2420 33 1 5.6990 0.5344 -1.4691 34 1 7.9812 -0.0076 1.8440 35 1 7.9108 -0.6763 0.1960 36 1 9.3544 0.2155 0.7341 37 1 11.2984 2.3359 0.5860 38 1 5.8943 2.8973 -1.0144 39 1 5.8569 3.4268 0.6819 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000181266188.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:16 Heat of formation + Delta-G solvation = -24.713864 kcal Electronic energy + Delta-G solvation = -19821.688519 eV Core-core repulsion = 16921.680696 eV Total energy + Delta-G solvation = -2900.007823 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.45943 -39.55310 -37.80457 -35.36119 -33.49957 -32.47621 -30.48849 -29.70498 -28.03292 -27.29217 -25.32036 -24.33187 -22.79975 -21.79534 -20.30488 -18.64491 -18.33871 -17.55915 -16.73079 -16.66097 -16.50045 -16.03615 -15.70895 -15.29397 -14.85640 -14.50370 -14.42509 -14.20605 -13.58105 -13.45400 -13.21234 -13.02349 -12.86133 -12.60944 -12.50336 -12.43330 -12.25845 -12.11286 -11.96230 -11.85833 -11.73221 -11.19050 -10.83774 -10.51331 -9.56354 -9.09206 -8.89945 -8.11309 -6.23298 0.39966 0.51948 1.41586 1.43582 1.55435 2.42009 2.43106 2.79925 3.15819 3.30585 3.79982 3.83135 4.11837 4.17701 4.27505 4.42143 4.45384 4.49894 4.53578 4.56973 4.66027 4.69421 4.78038 4.82917 4.87173 4.96481 5.05198 5.08134 5.18259 5.28241 5.41464 5.47317 5.54334 5.71761 5.73694 5.78230 5.86376 6.24829 6.39458 6.52969 6.69121 6.90596 7.46041 8.95093 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.030847 B = 0.005235 C = 0.004634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 907.499888 B = 5347.364050 C = 6041.387810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.332 6.332 3 C 0.117 3.883 4 C -0.212 4.212 5 C -0.080 4.080 6 C -0.165 4.165 7 C -0.053 4.053 8 C -0.122 4.122 9 C -0.052 4.052 10 C 0.045 3.955 11 N -0.534 5.534 12 C 0.214 3.786 13 H -0.036 1.036 14 C -0.121 4.121 15 C -0.519 4.519 16 H 0.058 0.942 17 C 0.013 3.987 18 N -0.920 5.920 19 Si 0.960 3.040 20 H -0.268 1.268 21 H -0.280 1.280 22 H -0.280 1.280 23 C 0.107 3.893 24 H 0.065 0.935 25 H 0.117 0.883 26 H 0.064 0.936 27 H 0.157 0.843 28 H 0.156 0.844 29 H 0.131 0.869 30 H 0.072 0.928 31 H 0.085 0.915 32 H 0.081 0.919 33 H 0.019 0.981 34 H 0.031 0.969 35 H 0.033 0.967 36 H 0.062 0.938 37 H 0.262 0.738 38 H 0.026 0.974 39 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.696 -1.094 -1.996 19.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.246 6.246 3 C 0.071 3.929 4 C -0.230 4.230 5 C -0.098 4.098 6 C -0.184 4.184 7 C -0.053 4.053 8 C -0.123 4.123 9 C -0.089 4.089 10 C -0.083 4.083 11 N -0.259 5.259 12 C 0.108 3.892 13 H -0.018 1.018 14 C -0.179 4.179 15 C -0.557 4.557 16 H 0.076 0.924 17 C -0.186 4.186 18 N -0.560 5.560 19 Si 0.786 3.214 20 H -0.192 1.192 21 H -0.206 1.206 22 H -0.206 1.206 23 C -0.021 4.021 24 H 0.084 0.916 25 H 0.135 0.865 26 H 0.082 0.918 27 H 0.174 0.826 28 H 0.174 0.826 29 H 0.149 0.851 30 H 0.090 0.910 31 H 0.104 0.896 32 H 0.100 0.900 33 H 0.038 0.962 34 H 0.050 0.950 35 H 0.052 0.948 36 H 0.081 0.919 37 H 0.071 0.929 38 H 0.043 0.957 39 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -19.543 -1.407 -1.531 19.653 hybrid contribution 0.967 0.929 -0.449 1.414 sum -18.576 -0.478 -1.980 18.687 Atomic orbital electron populations 1.23339 0.76525 1.05454 1.02235 1.86039 1.23342 1.26592 1.88643 1.18984 0.91196 0.85291 0.97391 1.21448 1.01052 0.91653 1.08887 1.21145 0.93609 0.98272 0.96786 1.21180 0.94791 0.97631 1.04791 1.19686 0.94834 0.93046 0.97779 1.19067 0.91199 0.95520 1.06526 1.20221 0.92535 0.94091 1.02053 1.22254 0.96194 0.95724 0.94106 1.62383 1.07154 1.03022 1.53323 1.19101 0.82186 0.94969 0.92980 1.01831 1.21672 1.02081 0.95630 0.98518 1.21415 0.92267 1.13657 1.28404 0.92412 1.25698 0.96939 0.99080 0.96855 1.70021 1.02535 1.40341 1.43057 0.85471 0.78238 0.79181 0.78535 1.19205 1.20577 1.20579 1.20724 0.89464 0.93758 0.98119 0.91591 0.86454 0.91763 0.82596 0.82634 0.85148 0.90995 0.89626 0.90036 0.96226 0.94985 0.94830 0.91908 0.92889 0.95659 0.90166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 9.81 113.37 1.11 1.38 16 2 O -0.33 -8.35 9.63 -92.47 -0.89 -9.24 16 3 C 0.12 3.33 6.65 22.56 0.15 3.48 16 4 C -0.21 -4.90 9.03 22.33 0.20 -4.70 16 5 C -0.08 -1.89 10.04 22.21 0.22 -1.66 16 6 C -0.17 -4.92 9.64 22.35 0.22 -4.70 16 7 C -0.05 -1.91 5.79 -19.88 -0.12 -2.03 16 8 C -0.12 -4.19 5.78 -19.76 -0.11 -4.31 16 9 C -0.05 -1.76 5.54 29.82 0.17 -1.60 16 10 C 0.05 1.78 5.42 86.22 0.47 2.25 16 11 N -0.53 -24.50 4.54 -880.27 -3.99 -28.49 16 12 C 0.21 11.33 2.04 44.17 0.09 11.42 16 13 H -0.04 -2.10 8.14 -2.39 -0.02 -2.12 16 14 C -0.12 -6.10 8.79 71.98 0.63 -5.47 16 15 C -0.52 -29.16 7.97 25.60 0.20 -28.96 16 16 H 0.06 3.24 6.46 -2.91 -0.02 3.22 16 17 C 0.01 0.72 5.30 84.65 0.45 1.17 16 18 N -0.92 -53.45 11.32 21.45 0.24 -53.21 16 19 Si 0.96 44.13 29.54 68.60 2.03 46.15 16 20 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 21 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 22 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 23 C 0.11 4.57 4.82 85.59 0.41 4.98 16 24 H 0.07 0.77 7.65 -2.39 -0.02 0.76 16 25 H 0.12 1.17 8.14 -2.38 -0.02 1.16 16 26 H 0.06 0.79 7.65 -2.39 -0.02 0.77 16 27 H 0.16 2.47 6.28 -2.91 -0.02 2.45 16 28 H 0.16 2.52 8.06 -2.91 -0.02 2.49 16 29 H 0.13 3.53 8.06 -2.91 -0.02 3.51 16 30 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 31 H 0.09 2.58 7.85 -2.39 -0.02 2.56 16 32 H 0.08 3.13 5.69 -2.39 -0.01 3.12 16 33 H 0.02 0.78 8.05 -2.39 -0.02 0.76 16 34 H 0.03 1.58 8.14 -2.39 -0.02 1.56 16 35 H 0.03 1.48 6.12 -2.39 -0.01 1.47 16 36 H 0.06 3.46 6.07 -2.39 -0.01 3.44 16 37 H 0.26 14.40 8.31 -92.71 -0.77 13.63 16 38 H 0.03 1.13 8.13 -2.39 -0.02 1.11 16 39 H 0.08 3.60 6.40 -2.38 -0.02 3.59 16 Total: -1.00 -65.13 306.33 2.52 -62.62 By element: Atomic # 1 Polarization: 9.88 SS G_CDS: 1.04 Total: 10.91 kcal Atomic # 6 Polarization: -32.84 SS G_CDS: 4.09 Total: -28.75 kcal Atomic # 7 Polarization: -77.95 SS G_CDS: -3.75 Total: -81.70 kcal Atomic # 8 Polarization: -8.35 SS G_CDS: -0.89 Total: -9.24 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 2.03 Total: 46.15 kcal Total: -65.13 2.52 -62.62 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000181266188.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.905 kcal (2) G-P(sol) polarization free energy of solvation -65.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.619 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds