Wall clock time and date at job start Mon Mar 30 2020 06:26:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08997 * 109.47416 * 2 1 4 4 C 1.50699 * 109.47209 * 119.99849 * 2 1 3 5 5 H 1.08005 * 120.00151 * 120.00310 * 4 2 1 6 6 C 1.37876 * 119.99959 * 299.99889 * 4 2 1 7 7 N 1.31511 * 120.00049 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99896 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.47183 * 90.00314 * 8 6 4 10 10 H 1.48508 * 109.46733 * 210.00040 * 8 6 4 11 11 H 1.48494 * 109.47282 * 330.00052 * 8 6 4 12 12 N 1.46905 * 109.47569 * 239.99769 * 2 1 3 13 13 C 1.46898 * 111.00200 * 99.39666 * 12 2 1 14 14 H 1.09010 * 109.24575 * 24.08693 * 13 12 2 15 15 C 1.52737 * 109.25242 * 264.62760 * 13 12 2 16 16 C 1.53330 * 108.37528 * 188.61374 * 15 13 12 17 17 C 1.52731 * 108.37605 * 69.85792 * 16 15 13 18 18 C 1.50625 * 110.59009 * 308.93141 * 17 16 15 19 19 C 1.39403 * 117.75450 * 197.46736 * 18 17 16 20 20 O 1.35908 * 119.78622 * 0.28885 * 19 18 17 21 21 C 1.38434 * 120.42954 * 180.30496 * 19 18 17 22 22 C 1.38173 * 119.70711 * 0.07087 * 21 19 18 23 23 C 1.37959 * 119.83153 * 0.17785 * 22 21 19 24 24 C 1.37566 * 122.59668 * 17.69571 * 18 17 16 25 25 H 1.09000 * 109.47370 * 305.95852 * 1 2 3 26 26 H 1.09001 * 109.47050 * 65.95449 * 1 2 3 27 27 H 1.09001 * 109.47218 * 185.94890 * 1 2 3 28 28 H 0.96998 * 120.00252 * 180.02562 * 7 6 4 29 29 H 1.00893 * 111.00116 * 223.35484 * 12 2 1 30 30 H 1.08993 * 109.68703 * 68.89386 * 15 13 12 31 31 H 1.09000 * 109.71016 * 308.34882 * 15 13 12 32 32 H 1.08993 * 109.68581 * 310.13488 * 16 15 13 33 33 H 1.09009 * 109.71383 * 189.59138 * 16 15 13 34 34 H 1.09000 * 109.25367 * 188.64384 * 17 16 15 35 35 H 1.09001 * 109.25532 * 69.21716 * 17 16 15 36 36 H 0.96708 * 113.99412 * 270.02099 * 20 19 18 37 37 H 1.08001 * 120.14347 * 180.09360 * 21 19 18 38 38 H 1.08001 * 120.08318 * 179.90617 * 22 21 19 39 39 H 1.08000 * 119.66742 * 179.66915 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6533 -1.5885 1.1314 6 6 1.6992 -0.2393 2.4827 7 7 0.9427 0.8297 2.6034 8 14 2.3213 -1.1202 4.0079 9 1 3.6296 -0.5458 4.4124 10 1 1.3430 -0.9491 5.1120 11 1 2.4858 -2.5661 3.7120 12 7 2.0197 -0.6925 -1.1994 13 6 2.4063 0.2683 -2.2412 14 1 2.6510 1.2234 -1.7761 15 6 1.2381 0.4625 -3.2058 16 6 1.7284 1.2932 -4.3976 17 6 2.6866 0.4350 -5.2211 18 6 3.7475 -0.1695 -4.3391 19 6 4.8977 -0.6634 -4.9526 20 8 5.0307 -0.5823 -6.3027 21 6 5.9052 -1.2363 -4.1955 22 6 5.7675 -1.3196 -2.8232 23 6 4.6266 -0.8353 -2.2173 24 6 3.6164 -0.2518 -2.9722 25 1 -0.3634 0.6034 0.8318 26 1 -0.3633 0.4187 -0.9385 27 1 -0.3634 -1.0221 0.1065 28 1 0.7087 1.1614 3.4843 29 1 2.7860 -1.3088 -0.9735 30 1 0.4281 0.9881 -2.7003 31 1 0.8847 -0.5076 -3.5551 32 1 2.2480 2.1810 -4.0374 33 1 0.8792 1.5894 -5.0136 34 1 3.1616 1.0552 -5.9813 35 1 2.1262 -0.3631 -5.7080 36 1 4.6838 -1.3493 -6.7788 37 1 6.7950 -1.6162 -4.6755 38 1 6.5491 -1.7668 -2.2269 39 1 4.5194 -0.9066 -1.1450 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000191283159.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:07 Heat of formation + Delta-G solvation = -29.221902 kcal Electronic energy + Delta-G solvation = -19847.769275 eV Core-core repulsion = 16947.565969 eV Total energy + Delta-G solvation = -2900.203306 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.29273 -37.64530 -35.79592 -34.98168 -32.62066 -30.33457 -30.04923 -28.25472 -26.84102 -25.06068 -23.06435 -22.56266 -21.43205 -19.86655 -19.23165 -17.96040 -16.68532 -15.92820 -15.70684 -15.46233 -14.78167 -14.18062 -14.09298 -13.72730 -13.58963 -13.15820 -12.75013 -12.40553 -12.15378 -12.08213 -11.74238 -11.44022 -11.26196 -11.03857 -10.88863 -10.82963 -10.67716 -10.57145 -10.19263 -10.14457 -9.93947 -9.66473 -8.81236 -8.60771 -8.40054 -8.35614 -7.28564 -6.04981 -4.12338 1.38545 1.48919 3.27011 3.34196 3.37417 3.73448 4.28390 4.37998 4.82207 4.87221 5.07691 5.19808 5.26568 5.26961 5.45463 5.49344 5.55850 5.68027 5.84181 5.94936 5.99150 6.08140 6.14083 6.24925 6.27983 6.47006 6.55839 6.69755 6.71529 6.88467 6.91702 6.96849 7.19085 7.30253 7.50454 7.68131 7.75096 7.93820 8.20431 8.36216 8.64783 8.99724 9.54019 11.00920 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.026422 B = 0.005548 C = 0.004707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1059.452083 B = 5045.707033 C = 5947.593930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.210 3.790 3 H 0.009 0.991 4 C -0.528 4.528 5 H 0.058 0.942 6 C 0.065 3.935 7 N -0.887 5.887 8 Si 0.894 3.106 9 H -0.281 1.281 10 H -0.286 1.286 11 H -0.274 1.274 12 N -0.684 5.684 13 C 0.124 3.876 14 H 0.058 0.942 15 C -0.104 4.104 16 C -0.121 4.121 17 C -0.073 4.073 18 C -0.097 4.097 19 C 0.093 3.907 20 O -0.499 6.499 21 C -0.153 4.153 22 C -0.107 4.107 23 C -0.124 4.124 24 C -0.053 4.053 25 H 0.074 0.926 26 H 0.009 0.991 27 H 0.030 0.970 28 H 0.261 0.739 29 H 0.335 0.665 30 H 0.069 0.931 31 H 0.068 0.932 32 H 0.062 0.938 33 H 0.065 0.935 34 H 0.074 0.926 35 H 0.071 0.929 36 H 0.384 0.616 37 H 0.123 0.877 38 H 0.124 0.876 39 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.469 -2.153 -14.483 15.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.102 3.898 3 H 0.027 0.973 4 C -0.566 4.566 5 H 0.076 0.924 6 C -0.137 4.137 7 N -0.525 5.525 8 Si 0.722 3.278 9 H -0.208 1.208 10 H -0.212 1.212 11 H -0.199 1.199 12 N -0.317 5.317 13 C 0.014 3.986 14 H 0.076 0.924 15 C -0.142 4.142 16 C -0.159 4.159 17 C -0.109 4.109 18 C -0.098 4.098 19 C 0.049 3.951 20 O -0.308 6.308 21 C -0.171 4.171 22 C -0.125 4.125 23 C -0.142 4.142 24 C -0.053 4.053 25 H 0.093 0.907 26 H 0.028 0.972 27 H 0.049 0.951 28 H 0.071 0.929 29 H 0.155 0.845 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.081 0.919 33 H 0.084 0.916 34 H 0.092 0.908 35 H 0.089 0.911 36 H 0.239 0.761 37 H 0.141 0.859 38 H 0.142 0.858 39 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 5.003 -1.598 -14.445 15.370 hybrid contribution 1.032 -0.619 1.217 1.712 sum 6.036 -2.217 -13.228 14.708 Atomic orbital electron populations 1.21720 0.97794 0.99891 0.98477 1.19262 0.92795 0.92528 0.85195 0.97337 1.21398 1.31775 1.12609 0.90865 0.92432 1.24906 0.94899 0.94942 0.98990 1.69905 1.36341 1.22802 1.23493 0.86566 0.78513 0.80094 0.82643 1.20754 1.21160 1.19861 1.60953 1.39263 1.19801 1.11696 1.20514 0.90106 0.95181 0.92784 0.92446 1.21604 0.97745 1.00142 0.94719 1.21597 0.98519 0.98488 0.97317 1.20311 0.94781 0.98958 0.96898 1.19892 0.95083 1.01121 0.93668 1.18430 0.93650 1.00056 0.82938 1.84791 1.84220 1.46371 1.15459 1.21240 0.99518 1.01851 0.94518 1.20909 0.97789 0.99814 0.94034 1.21354 0.93469 0.98528 1.00855 1.19950 0.96232 0.96823 0.92332 0.90738 0.97187 0.95123 0.92900 0.84462 0.91256 0.91331 0.91937 0.91615 0.90778 0.91107 0.76092 0.85930 0.85783 0.85096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.97 9.20 37.15 0.34 -2.62 16 2 C 0.21 5.22 2.71 -68.87 -0.19 5.03 16 3 H 0.01 0.24 7.07 -51.93 -0.37 -0.12 16 4 C -0.53 -14.21 8.59 -34.44 -0.30 -14.51 16 5 H 0.06 1.52 7.42 -52.48 -0.39 1.13 16 6 C 0.07 1.78 5.30 -17.82 -0.09 1.68 16 7 N -0.89 -25.11 11.39 55.43 0.63 -24.48 16 8 Si 0.89 21.03 29.54 -169.99 -5.02 16.00 16 9 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 10 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 11 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 12 N -0.68 -14.46 6.21 -102.35 -0.64 -15.09 16 13 C 0.12 2.28 2.57 -69.03 -0.18 2.10 16 14 H 0.06 1.16 7.09 -51.92 -0.37 0.79 16 15 C -0.10 -1.69 5.47 -26.70 -0.15 -1.83 16 16 C -0.12 -1.62 5.98 -26.70 -0.16 -1.78 16 17 C -0.07 -0.93 5.28 -28.06 -0.15 -1.07 16 18 C -0.10 -1.43 5.75 -104.47 -0.60 -2.03 16 19 C 0.09 1.27 6.66 -39.08 -0.26 1.01 16 20 O -0.50 -5.73 12.53 -19.45 -0.24 -5.97 16 21 C -0.15 -1.99 9.98 -39.53 -0.39 -2.39 16 22 C -0.11 -1.47 10.04 -39.71 -0.40 -1.87 16 23 C -0.12 -1.98 8.71 -39.42 -0.34 -2.33 16 24 C -0.05 -0.87 5.53 -104.63 -0.58 -1.45 16 25 H 0.07 1.99 6.25 -51.93 -0.32 1.67 16 26 H 0.01 0.21 6.61 -51.93 -0.34 -0.14 16 27 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 29 H 0.33 6.99 5.22 -39.30 -0.21 6.78 16 30 H 0.07 1.19 6.73 -51.93 -0.35 0.84 16 31 H 0.07 1.13 8.10 -51.93 -0.42 0.71 16 32 H 0.06 0.86 8.10 -51.93 -0.42 0.44 16 33 H 0.07 0.75 8.14 -51.92 -0.42 0.33 16 34 H 0.07 0.90 7.76 -51.93 -0.40 0.49 16 35 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.38 2.63 9.06 45.56 0.41 3.05 16 37 H 0.12 1.33 8.06 -52.49 -0.42 0.91 16 38 H 0.12 1.41 8.06 -52.49 -0.42 0.99 16 39 H 0.13 2.21 6.73 -52.49 -0.35 1.86 16 LS Contribution 307.78 15.07 4.64 4.64 Total: -1.00 -29.37 307.78 -8.85 -38.22 By element: Atomic # 1 Polarization: 13.51 SS G_CDS: -4.78 Total: 8.73 kcal Atomic # 6 Polarization: -18.61 SS G_CDS: -3.44 Total: -22.05 kcal Atomic # 7 Polarization: -39.57 SS G_CDS: 0.00 Total: -39.57 kcal Atomic # 8 Polarization: -5.73 SS G_CDS: -0.24 Total: -5.97 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -29.37 -8.85 -38.22 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000191283159.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.998 kcal (2) G-P(sol) polarization free energy of solvation -29.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds