Wall clock time and date at job start Mon Mar 30 2020 06:26:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08997 * 109.47416 * 2 1 4 4 C 1.50699 * 109.47209 * 119.99849 * 2 1 3 5 5 H 1.08005 * 120.00151 * 120.00310 * 4 2 1 6 6 C 1.37876 * 119.99959 * 299.99889 * 4 2 1 7 7 N 1.31511 * 120.00049 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99896 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.47183 * 90.00314 * 8 6 4 10 10 H 1.48508 * 109.46733 * 210.00040 * 8 6 4 11 11 H 1.48494 * 109.47282 * 330.00052 * 8 6 4 12 12 N 1.46905 * 109.47569 * 239.99769 * 2 1 3 13 13 C 1.46898 * 111.00200 * 99.39666 * 12 2 1 14 14 H 1.09010 * 109.24575 * 24.08693 * 13 12 2 15 15 C 1.52737 * 109.25242 * 264.62760 * 13 12 2 16 16 C 1.53330 * 108.37528 * 188.61374 * 15 13 12 17 17 C 1.52731 * 108.37605 * 69.85792 * 16 15 13 18 18 C 1.50625 * 110.59009 * 308.93141 * 17 16 15 19 19 C 1.39403 * 117.75450 * 197.46736 * 18 17 16 20 20 O 1.35908 * 119.78622 * 0.28885 * 19 18 17 21 21 C 1.38434 * 120.42954 * 180.30496 * 19 18 17 22 22 C 1.38173 * 119.70711 * 0.07087 * 21 19 18 23 23 C 1.37959 * 119.83153 * 0.17785 * 22 21 19 24 24 C 1.37566 * 122.59668 * 17.69571 * 18 17 16 25 25 H 1.09000 * 109.47370 * 305.95852 * 1 2 3 26 26 H 1.09001 * 109.47050 * 65.95449 * 1 2 3 27 27 H 1.09001 * 109.47218 * 185.94890 * 1 2 3 28 28 H 0.96998 * 120.00252 * 180.02562 * 7 6 4 29 29 H 1.00893 * 111.00116 * 223.35484 * 12 2 1 30 30 H 1.08993 * 109.68703 * 68.89386 * 15 13 12 31 31 H 1.09000 * 109.71016 * 308.34882 * 15 13 12 32 32 H 1.08993 * 109.68581 * 310.13488 * 16 15 13 33 33 H 1.09009 * 109.71383 * 189.59138 * 16 15 13 34 34 H 1.09000 * 109.25367 * 188.64384 * 17 16 15 35 35 H 1.09001 * 109.25532 * 69.21716 * 17 16 15 36 36 H 0.96708 * 113.99412 * 270.02099 * 20 19 18 37 37 H 1.08001 * 120.14347 * 180.09360 * 21 19 18 38 38 H 1.08001 * 120.08318 * 179.90617 * 22 21 19 39 39 H 1.08000 * 119.66742 * 179.66915 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6533 -1.5885 1.1314 6 6 1.6992 -0.2393 2.4827 7 7 0.9427 0.8297 2.6034 8 14 2.3213 -1.1202 4.0079 9 1 3.6296 -0.5458 4.4124 10 1 1.3430 -0.9491 5.1120 11 1 2.4858 -2.5661 3.7120 12 7 2.0197 -0.6925 -1.1994 13 6 2.4063 0.2683 -2.2412 14 1 2.6510 1.2234 -1.7761 15 6 1.2381 0.4625 -3.2058 16 6 1.7284 1.2932 -4.3976 17 6 2.6866 0.4350 -5.2211 18 6 3.7475 -0.1695 -4.3391 19 6 4.8977 -0.6634 -4.9526 20 8 5.0307 -0.5823 -6.3027 21 6 5.9052 -1.2363 -4.1955 22 6 5.7675 -1.3196 -2.8232 23 6 4.6266 -0.8353 -2.2173 24 6 3.6164 -0.2518 -2.9722 25 1 -0.3634 0.6034 0.8318 26 1 -0.3633 0.4187 -0.9385 27 1 -0.3634 -1.0221 0.1065 28 1 0.7087 1.1614 3.4843 29 1 2.7860 -1.3088 -0.9735 30 1 0.4281 0.9881 -2.7003 31 1 0.8847 -0.5076 -3.5551 32 1 2.2480 2.1810 -4.0374 33 1 0.8792 1.5894 -5.0136 34 1 3.1616 1.0552 -5.9813 35 1 2.1262 -0.3631 -5.7080 36 1 4.6838 -1.3493 -6.7788 37 1 6.7950 -1.6162 -4.6755 38 1 6.5491 -1.7668 -2.2269 39 1 4.5194 -0.9066 -1.1450 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000191283159.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:06 Heat of formation + Delta-G solvation = -48.252389 kcal Electronic energy + Delta-G solvation = -19848.594499 eV Core-core repulsion = 16947.565969 eV Total energy + Delta-G solvation = -2901.028530 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 261.147 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.43481 -38.86234 -37.07861 -36.42550 -34.42706 -31.91316 -31.22163 -29.59265 -28.39157 -27.12528 -24.27145 -23.72643 -22.74623 -21.70401 -20.43027 -19.18900 -18.38134 -17.15559 -17.00103 -16.80985 -16.36798 -15.68003 -15.49341 -15.08061 -14.76700 -14.70198 -14.28047 -13.74359 -13.46568 -13.33990 -13.25506 -12.99204 -12.86543 -12.70818 -12.52134 -12.28263 -12.20857 -12.05760 -11.92365 -11.76475 -11.43295 -11.00957 -10.78402 -10.57861 -9.73614 -9.44541 -9.00810 -8.14458 -6.29744 0.28703 0.37220 1.40020 1.41342 1.51753 2.39474 2.64644 3.13584 3.29979 3.62181 3.70075 3.76726 4.09979 4.13591 4.22396 4.32876 4.42282 4.51936 4.54931 4.73295 4.84219 4.93379 4.94874 5.01499 5.04552 5.12148 5.16698 5.26688 5.34319 5.39288 5.45600 5.51703 5.54797 5.66357 5.70690 5.90752 5.92816 6.16957 6.43502 6.74864 6.89534 6.99930 7.40882 8.90674 Molecular weight = 261.15amu Principal moments of inertia in cm(-1) A = 0.026422 B = 0.005548 C = 0.004707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1059.452083 B = 5045.707033 C = 5947.593930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.216 3.784 3 H -0.025 1.025 4 C -0.546 4.546 5 H 0.058 0.942 6 C 0.016 3.984 7 N -0.916 5.916 8 Si 0.961 3.039 9 H -0.276 1.276 10 H -0.283 1.283 11 H -0.267 1.267 12 N -0.680 5.680 13 C 0.126 3.874 14 H 0.028 0.972 15 C -0.099 4.099 16 C -0.115 4.115 17 C -0.068 4.068 18 C -0.106 4.106 19 C 0.100 3.900 20 O -0.500 6.500 21 C -0.148 4.148 22 C -0.105 4.105 23 C -0.146 4.146 24 C -0.074 4.074 25 H 0.050 0.950 26 H 0.028 0.972 27 H 0.024 0.976 28 H 0.263 0.737 29 H 0.334 0.666 30 H 0.053 0.947 31 H 0.069 0.931 32 H 0.053 0.947 33 H 0.091 0.909 34 H 0.087 0.913 35 H 0.089 0.911 36 H 0.408 0.592 37 H 0.151 0.849 38 H 0.146 0.854 39 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.656 -3.255 -16.388 17.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.108 3.892 3 H -0.008 1.008 4 C -0.584 4.584 5 H 0.076 0.924 6 C -0.184 4.184 7 N -0.555 5.555 8 Si 0.786 3.214 9 H -0.202 1.202 10 H -0.208 1.208 11 H -0.192 1.192 12 N -0.312 5.312 13 C 0.016 3.984 14 H 0.045 0.955 15 C -0.137 4.137 16 C -0.153 4.153 17 C -0.105 4.105 18 C -0.107 4.107 19 C 0.056 3.944 20 O -0.312 6.312 21 C -0.167 4.167 22 C -0.123 4.123 23 C -0.165 4.165 24 C -0.075 4.075 25 H 0.069 0.931 26 H 0.047 0.953 27 H 0.043 0.957 28 H 0.072 0.928 29 H 0.155 0.845 30 H 0.071 0.929 31 H 0.087 0.913 32 H 0.072 0.928 33 H 0.109 0.891 34 H 0.105 0.895 35 H 0.107 0.893 36 H 0.266 0.734 37 H 0.169 0.831 38 H 0.164 0.836 39 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 6.189 -2.716 -16.383 17.722 hybrid contribution 0.713 -0.270 1.705 1.868 sum 6.902 -2.986 -14.678 16.492 Atomic orbital electron populations 1.21541 0.97613 0.98996 0.98466 1.19037 0.92893 0.90827 0.86438 1.00789 1.21720 1.31944 1.12784 0.91954 0.92407 1.25722 0.95032 0.95624 1.02001 1.70037 1.37244 1.24009 1.24190 0.85517 0.78002 0.79107 0.78772 1.20151 1.20804 1.19170 1.60915 1.39581 1.20096 1.10654 1.20479 0.92309 0.93173 0.92433 0.95458 1.21537 0.96341 1.00538 0.95325 1.21564 0.99598 0.97725 0.96377 1.20341 0.94220 0.99397 0.96517 1.20112 0.96377 1.01205 0.92973 1.18461 0.93001 0.98958 0.84006 1.84738 1.84333 1.47953 1.14208 1.21565 1.00218 1.00826 0.94062 1.21139 0.97228 0.99044 0.94857 1.21307 0.94877 1.00273 0.99994 1.19790 0.95666 0.98628 0.93395 0.93068 0.95325 0.95714 0.92819 0.84527 0.92854 0.91270 0.92788 0.89054 0.89464 0.89299 0.73352 0.83115 0.83583 0.87207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.49 9.20 71.98 0.66 -4.83 16 2 C 0.22 11.28 2.71 44.17 0.12 11.40 16 3 H -0.03 -1.48 7.07 -2.39 -0.02 -1.49 16 4 C -0.55 -30.26 8.59 25.60 0.22 -30.04 16 5 H 0.06 3.13 7.42 -2.91 -0.02 3.10 16 6 C 0.02 0.88 5.30 84.65 0.45 1.33 16 7 N -0.92 -53.27 11.39 21.45 0.24 -53.02 16 8 Si 0.96 43.62 29.54 68.60 2.03 45.65 16 9 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 10 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 11 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 12 N -0.68 -29.91 6.21 -477.71 -2.96 -32.88 16 13 C 0.13 4.81 2.57 44.06 0.11 4.92 16 14 H 0.03 1.20 7.09 -2.38 -0.02 1.18 16 15 C -0.10 -3.23 5.47 30.62 0.17 -3.07 16 16 C -0.11 -2.90 5.98 30.62 0.18 -2.72 16 17 C -0.07 -1.56 5.28 29.73 0.16 -1.40 16 18 C -0.11 -2.94 5.75 -19.77 -0.11 -3.05 16 19 C 0.10 2.43 6.66 22.60 0.15 2.58 16 20 O -0.50 -9.45 12.53 -92.51 -1.16 -10.61 16 21 C -0.15 -3.41 9.98 22.30 0.22 -3.19 16 22 C -0.10 -2.71 10.04 22.19 0.22 -2.48 16 23 C -0.15 -4.74 8.71 22.38 0.19 -4.55 16 24 C -0.07 -2.47 5.53 -19.87 -0.11 -2.58 16 25 H 0.05 2.83 6.25 -2.39 -0.01 2.82 16 26 H 0.03 1.29 6.61 -2.39 -0.02 1.28 16 27 H 0.02 1.23 8.14 -2.39 -0.02 1.21 16 28 H 0.26 14.48 8.31 -92.71 -0.77 13.71 16 29 H 0.33 14.59 5.22 -89.70 -0.47 14.12 16 30 H 0.05 1.87 6.73 -2.39 -0.02 1.85 16 31 H 0.07 2.23 8.10 -2.39 -0.02 2.21 16 32 H 0.05 1.45 8.10 -2.39 -0.02 1.43 16 33 H 0.09 1.86 8.14 -2.38 -0.02 1.84 16 34 H 0.09 1.81 7.76 -2.39 -0.02 1.79 16 35 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 36 H 0.41 3.77 9.06 -74.05 -0.67 3.10 16 37 H 0.15 2.61 8.06 -2.91 -0.02 2.59 16 38 H 0.15 3.03 8.06 -2.91 -0.02 3.01 16 39 H 0.11 3.94 6.73 -2.91 -0.02 3.92 16 Total: -1.00 -64.30 307.78 0.71 -63.59 By element: Atomic # 1 Polarization: 25.02 SS G_CDS: -0.07 Total: 24.95 kcal Atomic # 6 Polarization: -40.31 SS G_CDS: 2.64 Total: -37.68 kcal Atomic # 7 Polarization: -83.18 SS G_CDS: -2.72 Total: -85.90 kcal Atomic # 8 Polarization: -9.45 SS G_CDS: -1.16 Total: -10.61 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 2.03 Total: 45.65 kcal Total: -64.30 0.71 -63.59 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000191283159.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.339 kcal (2) G-P(sol) polarization free energy of solvation -64.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.591 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds